BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490669
Length=1404
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38990.1 | Symbols: AtGH9B16, GH9B16 | glycosyl hydrolase 9B... 917 0.0
> AT4G38990.1 | Symbols: AtGH9B16, GH9B16 | glycosyl hydrolase
9B16 | chr4:18169175-18170949 REVERSE LENGTH=1044
Length=1044
Score = 917 bits (496), Expect = 0.0
Identities = 583/624 (93%), Gaps = 10/624 (2%)
Strand=Plus/Plus
Query 1 ATGAAGCCATCGATTTGCTC-TTCCATAGTTCTTATTCTCCTCATCATCCTACCAACGAC 59
|||||||||| | ||||||| || |||| |||| ||||||||| |||||||||||||
Sbjct 1 ATGAAGCCATTGGTTTGCTCGTT-TATAG---TTATCCTCCTCATCCTCCTACCAACGAC 56
Query 60 GATTTCTCACGACTACTCCGATGCTCTCACAAAGTCAATCCTCTTCTTTGAAGGTCAACG 119
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 57 GATTTCTCACGACTACTCCGATGCTCTCACAAAGTCAATCCTCTTCTTCGAAGGTCAACG 116
Query 120 CTCTGGATATCTTCCCA-GAGAACAGAGGATGACGTGGCGCCGCAACTCCGCACTCAACG 178
||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 117 ATCTGGATATCT-CCCAAGAGAACAGAGGATGACGTGGCGCCACAACTCCGCACTCAACG 175
Query 179 ACGGCAAGAACCTCAATGCCAACCTCGTTGGTGGCTACTACGACGCCGGAGATAACATTA 238
| |||||||||||||||| | ||||||||||||| ||||||||||||||||| |||||||
Sbjct 176 ATGGCAAGAACCTCAATGTCGACCTCGTTGGTGGTTACTACGACGCCGGAGACAACATTA 235
Query 239 AGTTCCATTTTCCGATGGCTTTTACGGCTACCATGCTTGCGTGGAGCGCTATCGACTTTG 298
| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
Sbjct 236 AATTCCATTTTCCGATGGCTTTTACGACTACGATGCTTGCGTGGAGCGCTATCGACTTCG 295
Query 299 GAAGTTACATGTCTCCGGCTGATCTCAGGGACAATCTCGTCGCTCTCCGGTGGGGCACCA 358
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 296 GAAGTTACATGTCTCCGGCTGATCTCCGGGACAATCTCGTCGCTCTCCGGTGGGGCAGCA 355
Query 359 ATTATCTCCTTAAGACCGTTTCGCAACTTCCTAATCGCATCTTCGTCCAAGTAGGTGAAC 418
|||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 356 ATTATCTCCTCAAGACCGTTTCCCAACTCCCTAATCGCATCTTCGTCCAAGTAGGTGAAC 415
Query 419 CAACACCGGATTATCAGTGTTGGGAGAGACCAGAGGATATGGACACACCACGGACAGCTT 478
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 416 CAACACCGGATCATCAGTGTTGGGAGAGACCAGAGGACATGGACACACCACGGACCGCTT 475
Query 479 ACGC-CGTGGAAGCACCGAATCCAGCCTCTGATTTAGCTGGAGAAATCGCAGCTGCGTTG 537
|||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 476 ACGCAC-TGGAAGCACCGAAACCAGCCTCTGATTTAGCTGGAGAAATCGCAGCTGCGTTG 534
Query 538 GCAGCCGCTTCAATTGCATTCAAACGATTTGATCCTAGATATTCTAAATTGTTGCTCGAT 597
|||||||| ||||| ||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 535 GCAGCCGCCTCAATCGCATTCAAACGATTTGATCCTAGATATTCTAAACTATTGCTCGAT 594
Query 598 AATGCTTTAACAACTTTTGA-GTA 620
|||||||||| ||||||||| |||
Sbjct 595 AATGCTTTAAGAACTTTTGATGTA 618
Score = 652 bits (353), Expect = 0.0
Identities = 381/395 (96%), Gaps = 0/395 (0%)
Strand=Plus/Plus
Query 693 TGTAAACGGATATGAGGATGAGTTATTATGGGGAGCTGCATGGTTGAGAAGAGCGACCGG 752
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 615 TGTAAACGGATATGAGGATGAATTATTATGGGGAGCTGCATGGCTGAGAAGAGCGACCGG 674
Query 753 TAAAGATTCTTACATTAAATACTTAGTGGACAATCGTCAATCTTTTGGGTCAGATTCCAA 812
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 675 TAAAGATTCTTACATTAAATACTTAGTGGAGAATCGTCAATCTTTTGGGTCAGATTCCAA 734
Query 813 TTACTTCGAGTTTGGATGGGATAACAAAGTTGGGGGCGTCAATGTTCTCGTTGCAAAGGA 872
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 735 TTACTTCGAGTTTGGATGGGATAACAAAGTTGGGGGCGTCAATGTCCTCGTTGCCAAGGA 794
Query 873 AGTATTTGAAAAGAATGTAGCTGGGATTGCACCGTATAAGGACACAGCGGAAAAATTGAT 932
||||||||| |||||||| |||| |||||||||||||||||| |||||||||||||||||
Sbjct 795 AGTATTTGAGAAGAATGTTGCTGCGATTGCACCGTATAAGGATACAGCGGAAAAATTGAT 854
Query 933 GTGTTCGTTTTTTCTGGAAACTCCGGGTGCACATATGAGTTACTCTCCCGGTGGCCTTCT 992
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 855 GTGTTCGTTTTTTCTGGAAACTCCTGGTGCACATATGAGTTACTCTCCCGGTGGTCTTCT 914
Query 993 TTACAAACCCGGAAGCAGTCAGCTCCAAAACACCGTCGCATTGTCTTTTCTCCTTCTCAC 1052
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 915 TTACAAACCCGGAAGCAGCCAGCTCCAAAACACCGTCGCATTGTCTTTTCTCCTTCTCAC 974
Query 1053 TTACGCCAATTACCTTTCTAAATCCTCTCAACAAC 1087
||||||||||||||| || ||||||||||||||||
Sbjct 975 TTACGCCAATTACCTCTCCAAATCCTCTCAACAAC 1009
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69176351010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5