BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490671
Length=2002
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39030.1 | Symbols: EDS5, SID1 | MATE efflux family protein ... 2907 0.0
AT4G39040.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain ... 84.2 4e-15
> AT4G39030.1 | Symbols: EDS5, SID1 | MATE efflux family protein
| chr4:18185667-18189224 FORWARD LENGTH=2031
Length=2031
Score = 2907 bits (1574), Expect = 0.0
Identities = 1898/2045 (93%), Gaps = 59/2045 (3%)
Strand=Plus/Plus
Query 1 ATCTCGAGGCGCCAAAAACAAC--C---AAAAACTTCATAGCGGTGATCAGATTCACCAA 55
|||||||||||||||||||||| | |||||||||| ||||||||||||||||||| |
Sbjct 3 ATCTCGAGGCGCCAAAAACAACAACAAAAAAAACTTCAGAGCGGTGATCAGATTCACCGA 62
Query 56 TTTTCTCTCAAAATGCTAATCAAATCCCAAAGATTGACCCTTTTCTCTCCTCTCTT-TCC 114
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
Sbjct 63 TTTT-TCTCAAAATGCTAATCAAATCCCAAAGATTGACTCTTTTCTCTCCTCTCTTGT-C 120
Query 115 CAAACCAAGACCGATTCCGGTTAACTACCACCAGACACTGGTCGCAGAATCGGTGCTAAC 174
|||| |||||| ||| |||||||||| |||||| ||||||||||||||||||||| ||||
Sbjct 121 CAAAACAAGACGGATCCCGGTTAACTCCCACCAAACACTGGTCGCAGAATCGGTGATAAC 180
Query 175 TCGGAGAAAACTCGGTGCGATCACCGCAACTCCGAGTTTCCA-AGGAAATCCGGTGGTGA 233
|||||||| |||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct 181 TCGGAGAACACTCGGTGCGATCACCGCAACTCCGAGTTTTCATA-AAAATCCGGTGGTGA 239
Query 234 CTCCG-CGGAGAATCAAATTAGAGCA-AGTTACGAGGAACTGCATCGA-AATTGATCGGG 290
| || ||||| |||||||||||| | |||||||||||||||| || | |||||||||||
Sbjct 240 -TTCGACGGAGGATCAAATTAGAG-AGAGTTACGAGGAACTGCGTC-AGAATTGATCGGG 296
Query 291 AAATCGAC------gaagaagaagaggagaagaagagagGGGATCTGGTGAAACAGAGCA 344
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 297 AAATCGACGAAGAAGAAGAAGAAGAGGAGAAGGAGAGAGGGGATCTGGTGAAACAGAGCA 356
Query 345 TATGGGAACAGATGAAAGAGATAGTGAAGTTCACAGGTCCGGCGATGGGGATGTGGATTT 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TATGGGAACAGATGAAAGAGATAGTGAAGTTCACAGGTCCGGCGATGGGGATGTGGATTT 416
Query 405 GTGGACCGTTGATGAGTCTCATCGACACGGTCGTCATCGGCCAAGGAAGCTCCATCGAAC 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GTGGACCGTTGATGAGTCTCATCGACACGGTCGTCATCGGCCAAGGAAGCTCCATCGAAC 476
Query 465 TCGCTGCTCTTGGACCCGGAACAGTACTATGCGACCACATGAGTTACGTCTTCATGTTCC 524
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 477 TCGCTGCTCTTGGACCGGGAACAGTACTATGCGACCACATGAGTTATGTCTTCATGTTCC 536
Query 525 TCTCCGTGGCTACATCCAACATGGTCGCAACTTCTCTTGCCAAACAGGACAAGAAAGAAG 584
||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 537 TCTCCGTGGCTACATCCAATATGGTTGCTACTTCTCTTGCCAAACAGGACAAGAAAGAAG 596
Query 585 CACAACATCAAATCTCTGTCTTGCTCTTCGTTGGATTGGTTTGTGGACTAATGATGCTTC 644
| ||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 597 CGCAACATCAAATCTCTGTTTTACTCTTTATTGGATTGGTTTGTGGACTAATGATGCTTC 656
Query 645 TGCTCACAAGATTATTCGGTCCTTGGGCTGTTACTGCTTTTACAAGGGGGAAGAACATTG 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TGCTCACAAGATTATTCGGTCCTTGGGCTGTTACTGCTTTTACAAGGGGGAAGAACATTG 716
Query 705 AGATTGTCCCTGCAGCTAATACA-TATATTCAGATTCGAGGCTTAGCGTGGCCGTTTATC 763
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 717 AGATTGTCCCTGCAGCTAATA-AGTATATTCAGATTCGAGGCTTAGCGTGGCCGTTTATC 775
Query 764 CTTGTTGGATTGGTTGCTCAAAGCGCAAGTCTTGGAATGAAGAACTCATGGGGACCTCTT 823
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 776 CTTGTTGGATTGGTTGCTCAAAGTGCAAGTCTTGGAATGAAGAACTCATGGGGACCTCTT 835
Query 824 AAGGCTTTAGCTGCAGCAACGATCATTAACGGTCTTGGTGATACAATCTTATGCTTGTTT 883
|| || |||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 836 AAAGCATTAGCTGCAGCAACGATCATTAACGGTCTTGGCGATACAATCCTATGCTTGTTT 895
Query 884 CTTGGGCAAGGTATCGCTGGAGCTGCTTGGGCAACAACTGCTTCTCAGATTGTTTCGGCT 943
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 896 CTTGGACAAGGTATCGCTGGAGCTGCTTGGGCAACAACTGCTTCACAGATTGTTTCGGCT 955
Query 944 TATATGATGATGGATTCTCTGAACAAAGAAGGCTACAATGCTTACTCTTTTGCGATCCCT 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TATATGATGATGGATTCTCTGAACAAAGAAGGCTACAATGCTTACTCTTTTGCGATCCCT 1015
Query 1004 TCACCGCAAGAACTATGGAAGATCTCTGCACTCGCTGCACCTGTTTTTATCTCCATCTTC 1063
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1016 TCACCGCAAGAACTATGGAAGATCTCTGCACTCGCTGCACCTGTTTTTATCTCCATTTTC 1075
Query 1064 TCCAAGATTGCTTTCTACTCTTTCATCATCTACTGTGCTACTTCCATGGGAACTCACGTT 1123
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1076 TCCAAGATTGCTTTCTACTCTTTCATAATTTACTGTGCTACTTCCATGGGAACTCACGTT 1135
Query 1124 TTAGCCGCTCATCAGGTGATGGCTCAGACGTACAGGATGTGCAACGTATGGGGTGAGCCA 1183
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1136 TTAGCCGCTCATCAGGTGATGGCTCAGACGTATAGGATGTGCAATGTATGGGGTGAGCCA 1195
Query 1184 CTCTCTCAAACGGCTCAGTCCTTTATGCCAGAGATGTTATATGGTGCGAACCGTAACCTT 1243
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1196 CTCTCTCAAACGGCTCAGTCATTTATGCCAGAGATGTTATATGGTGCGAACCGTAATCTT 1255
Query 1244 CCAAAGGCTAGAACGTTGCTTAAGTCCCT-AGTGATTATTGGAGCCACCCTTGGATTAGT 1302
|| |||||||||||||||||||||||||| | |||||||||||||||| |||||||||||
Sbjct 1256 CCCAAGGCTAGAACGTTGCTTAAGTCCCTGA-TGATTATTGGAGCCACGCTTGGATTAGT 1314
Query 1303 CTTGGGAGTTATCGGAACAGCGGTTCCAGGCCTGTTTCCTGGTGTCTACACACATGATAA 1362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 CTTGGGAGTTATCGGAACAGCGGTTCCAGGCCTGTTTCCTGGTGTCTACACACATGATAA 1374
Query 1363 AGTCATCATATCCCAGATGCATAAATTGCTTATACCTTTCTTCATGGCGTTGTCTGCATT 1422
||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1375 AGTCATCATATCCGAGATGCATAGACTGCTTATACCTTTCTTCATGGCGTTGTCTGCATT 1434
Query 1423 GCCTATGACAGTATCCCTCGAGGGTACATTGCTGGCGGGACGTGATCTCAAATTCGTCAG 1482
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 GCCCATGACAGTATCCCTCGAGGGTACATTGCTGGCGGGACGTGATCTCAAATTCGTCAG 1494
Query 1483 CTCGGTGATGAGTTCAAGCTTCGTTCTTGGCTGTCTCACACTAATGTTCGTGACACGGAG 1542
||| |||||||||||||||||| | |||| |||||||||||||||||||||||| | ||
Sbjct 1495 CTCAGTGATGAGTTCAAGCTTCATAATTGGTTGTCTCACACTAATGTTCGTGACAAGAAG 1554
Query 1543 TGGCTATGGTTTACTCGGCTGCTGGTTCGTTCTCGTTGGATTTCAATGGGGTCGGTTTGG 1602
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1555 TGGCTATGGTTTACTCGGCTGCTGGTTCGTTCTCGTCGGATTTCAATGGGGCCGGTTTGG 1614
Query 1603 TCTGTATCTACGACGGCTTCTTTCGCCTGGAGGCATACTTAATTCGGATGGGATGAGTCC 1662
||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1615 TCTATATCTACGACGGCTTCTTTCGCCTGGAGGCATACTTAATTCAGATGGGCCGAGTCC 1674
Query 1663 ATATACGGCGGAGAAGATCAAATCCATTTA-GTCTCAGTATGATGATTTCATTGATTATC 1721
||| |||| ||||||||| ||||||||||| |||||||| ||||||| ||||||||||||
Sbjct 1675 ATACACGGTGGAGAAGATTAAATCCATTTAAGTCTCAGTTTGATGATCTCATTGATTATC 1734
Query 1722 TAAAGAGTTTGCCAACAAATGGCTAATTATGATATATCAGGCACCaaaaa-aaGCAA-GT 1779
||| ||||||||||||||||||||||||||||||||||||||||||| ||| || |
Sbjct 1735 TAA-GAGTTTGCCAACAAATGGCTAATTATGATATATCAGGCACCAATGTCAAGAAACGG 1793
Query 1780 C-ACATCTTATTGTCAACTTCtttt-tttGGTCAGAGGCTCAATGCAAATCTAAAGCATA 1837
| | || | ||||||||||| |||| ||||||||||||||||||| |||| |||||||||
Sbjct 1794 CTA-AT-T-ATTGTCAACTT-TTTTCTTTGGTCAGAGGCTCAATGTAAATTTAAAGCATA 1849
Query 1838 ATAGACAAATAATATTTA-A-GTGTGGTTAGTTCAATCAGTTAGGAAAA-ATCAAATTCA 1894
||||||||||||||| || | ||||||||||||||||||||||| |||| ||||||||||
Sbjct 1850 ATAGACAAATAATATATACAAGTGTGGTTAGTTCAATCAGTTAG-AAAAGATCAAATTCA 1908
Query 1895 CTGATAGGTTCTTTTGTGACTCGTCTCTTC--ATCAGAGGAGAATTTG--A-A-----T- 1943
||||||| | | | | | | |||| | || ||||||||||| | | |
Sbjct 1909 CTGATAGAT-CGACTCTT-CACAAAGCTTCCCAGCAAAGGAGAATTTGGCATAAAAGATC 1966
Query 1944 ---GTGATTGTTTTTCTAATTGTATTCTT---GAAGAAATGAAAATGCATCACTACTCTT 1997
|||||||| |||||||||||||| || | ||||||||||||||||||||||||||
Sbjct 1967 AATGTGATTGTATTTCTAATTGTATTATTATTGGAGAAATGAAAATGCATCACTACTCTT 2026
Query 1998 GAGAT 2002
|||||
Sbjct 2027 GAGAT 2031
> AT4G39040.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain
protein | chr4:18189072-18190556 REVERSE LENGTH=1089
Length=1089
Score = 84.2 bits (45), Expect = 4e-15
Identities = 59/65 (91%), Gaps = 3/65 (5%)
Strand=Plus/Minus
Query 1941 AATGTGATTGTTTTTCTAATTG---TATTCTTGAAGAAATGAAAATGCATCACTACTCTT 1997
||||||||||| |||||||||| |||| ||| ||||||||||||||||||||||||||
Sbjct 1001 AATGTGATTGTATTTCTAATTGTATTATTATTGGAGAAATGAAAATGCATCACTACTCTT 942
Query 1998 GAGAT 2002
|||||
Sbjct 941 GAGAT 937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99196276920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5