BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490673
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39040.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain ... 1317 0.0
AT2G21350.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain ... 263 3e-69
> AT4G39040.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain
protein | chr4:18189072-18190556 REVERSE LENGTH=1089
Length=1089
Score = 1317 bits (713), Expect = 0.0
Identities = 910/998 (91%), Gaps = 41/998 (4%)
Strand=Plus/Plus
Query 1 GTGTTTGGTGCAATGGAGAGAGTGACAGCAACATCGTCTTCTTCATCGACTCACCTTATC 60
||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||
Sbjct 10 GTGTTTGGTGCAATGGAGAGAGTGACAGCGTCAGCGTCTTGTTCATCGACTCACCTTATC 69
Query 61 CACAATCTTCTTCTCCGACATCCCAAAGCGCCGTCGT-CGGTCTGTCTCTTCCTTAGACC 119
||||| ||||||||||||||||||| | ||||| | |||||||||||||||| |||||
Sbjct 70 CACAA---TCTTCTCCGACATCCCAAACCACCGTC-TCCGGTCTGTCTCTTCCTCAGACC 125
Query 120 CTTTTGCTTCTCCGCTTCAATCTCTCAATCCAATCTCCGTAACACGCCCCG----C---C 172
||||||||||||||||||| ||||||||||||||| |||||||| ||| || | |
Sbjct 126 CTTTTGCTTCTCCGCTTCAGTCTCTCAATCCAATCACCGTAACAAGCCTCGATTTCAATC 185
Query 173 -TTC-AATCAAAGCCGCTTCCATCTCGTTCTACTTCACTCGTAGTGAAATCCTTCTCTTC 230
||| |||||||||||||| | || |||| ||||||||||||||||||||||||||||
Sbjct 186 ATTCTCCTCAAAGCCGCTTCCTTGTCATTCTGCTTCACTCGTAGTGAAATCCTTCTCTTC 245
Query 231 CATCGATGAACCAGATCTcgaagaggacgaagagagcgaggatgaaga-at-a---c--- 282
|||||||||||||||||||||||| ||||||||||||||||||||||| | | |
Sbjct 246 CATCGATGAACCAGATCTCGAAGAAGACGAAGAGAGCGAGGATGAAGATTTCAGCGCAGA 305
Query 283 -gaatacg-a-a-gaaggcgaagaagaagaagaTGAGCTGGACAGTGGAGTGGTGGTTGC 338
||||||| | | |||| |||||||||||||||||||| ||||||||||||||||||| |
Sbjct 306 AGAATACGAATACGAAGACGAAGAAGAAGAAGATGAGCAGGACAGTGGAGTGGTGGTTTC 365
Query 339 CGTGAGAGGAATTGAAGATTCGGAAGCATCTGA-GATGGGTT------TAGGAGATAAAG 391
|| |||||||||||||||||||||||||||||| || || || ||||||||||||
Sbjct 366 CGAGAGAGGAATTGAAGATTCGGAAGCATCTGAGGA-GGTTTCGGAAATAGGAGATAAAG 424
Query 392 AGGAGAAAACAGAG-A-A-GGCGAAGAAGAAGAGTCGAGGCTCTGCTTTGAAGCTGTCGA 448
|||||||||||||| | | | |||||||||||||||||||||||||||||| |||||||
Sbjct 425 AGGAGAAAACAGAGAATACGAAGAAGAAGAAGAGTCGAGGCTCTGCTTTGAAACTGTCGA 484
Query 449 TAAAGGAGAAGAAGGAATTGGCTTCTTACGCACATAGTTTGGGTGATAAATTGAAATGTC 508
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 485 TAAAGGAGAAAAAGGAATTGGCTTCTTACGCGCATAGTTTGGGTGATAAATTGAAATGTC 544
Query 509 AACTCGTCGGCAAATCTGGCGTTACTGATTCAGTCGTTTTCTCCTTCCTCGAGACCCTCG 568
||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 545 AACTCGTCGGCAAATCTGGTGTTACTGATTCTGTCGTTTTCTCATTCCTCGAGACTCTCG 604
Query 569 AGAAGAACGAGCTCTTAAAGGTGAAAATACGCAAGACATCGCCCGATGAGCTAGAGGATG 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 AGAAGAACGAGCTCTTAAAGGTGAAAATACGCAAGACATCGCCCGATGAGCTAGAGGATG 664
Query 629 CGGTTCAGCATTTGGAGGAAGCGACTGGTTCGGTAGCAGTAGGGCAAATCGGGCGGACTG 688
|||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 665 CGGTGCAGCATTTGGAGGAAGCGACTGGTTCCGTAGCAGTAGGGCAAATAGGGCGGACTG 724
Query 689 TGATATTGTATCGGCCTAGTCCCACCAAAATGAAAGCAGAGGCGAAGAAGAAGGAAGTTG 748
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 TGATATTGTATAGGCCCAGTCCCACCAAAATGAAAGCAGAGGCGAAGAAGAAGGAAGTTG 784
Query 749 AGAGAATGTCAATTACTAGAAGGCACAAATACACAAACACTAGACCCACTAAACCCTTTA 808
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 785 AGAGAATGTCAATTACTAGAAGGCAGAAATACGCAAACACTAGACCCACTAAACCCTTTA 844
Query 809 GAAGAGAATATTCAGAGAGACCTGATGGACGTGGACGCAGAGGCGGAAGTAGAGTTCCAA 868
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 GAAGAGAGTATTCAGAGAGACCTGATGGACGTGGACGCAGAGGCGGAAGTAGAGTTCCAA 904
Query 869 CGGCTTAAATCTTTACCCGGTTTGTTTGTTATCATCTCAAGAGTAGTGATGCATTTTCAG 928
|||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 905 CGGCTTAAATTTTTACCCG-TTTGTTTGTTTTCATCTCAAGAGTAGTGATGCATTTTCAT 963
Query 929 TTCTTCAAGAATA---CAATTAGAAAAACAATCACATT 963
|||| ||| |||| |||||||||| |||||||||||
Sbjct 964 TTCTCCAATAATAATACAATTAGAAATACAATCACATT 1001
> AT2G21350.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain
protein | chr2:9136451-9137267 REVERSE LENGTH=669
Length=669
Score = 263 bits (142), Expect = 3e-69
Identities = 255/307 (83%), Gaps = 18/307 (6%)
Strand=Plus/Plus
Query 428 GCTCTGCTTTGAAGCTGTC-GATAAAGGAGAAGAAGGAA--TTGGCTTCTTACGCACAT- 483
|||| |||||| || |||| | ||| |||||| || || || |||||||||||||||
Sbjct 341 GCTCGGCTTTGGAGTTGTCTGCGAAA-GAGAAG-AGAAAGCTT-GCTTCTTACGCACATC 397
Query 484 AGTTTGGGTGATAAATTGAAATGTCAACTCGTCGGCAAATCTGGCGTTACTGATTCAGTC 543
| ||||||||| ||| |||||| |||||| || ||||| ||||||||||| |||||||||
Sbjct 398 A-TTTGGGTGACAAACTGAAATCTCAACTTGTAGGCAAGTCTGGCGTTACGGATTCAGTC 456
Query 544 GTTTTCTCCTTCCTCGAGACCCTCGAGAAGAACGAGCTCTTAAAGGTGAAAATACGCAAG 603
|| || |||||| | ||||| || ||||||||||||||||||||||||||||||| || |
Sbjct 457 GTCTTGTCCTTCGTAGAGACGCTGGAGAAGAACGAGCTCTTAAAGGTGAAAATACACA-G 515
Query 604 A-CATCGCCC-G-ATGAGCTAGAGGATGCGGTTC-AGCATTTGGAGGAAGCGACTGGTTC 659
| ||| |||| | | ||||||||||| | ||| | | |||||||||||| ||||||||
Sbjct 516 AACAT-GCCCTGGA-GAGCTAGAGGACATGATTCTA-CGTTTGGAGGAAGCCACTGGTTC 572
Query 660 GGTAGCAGTAGGGCAAATCGGGCGGACTGTGATA-TTGTATCGGCCTAGTCCCACCAAAA 718
||| |||| |||||||| | |||||| |||||| || ||||| |||||||||||||||
Sbjct 573 AGTATCAGTCGGGCAAATTGCGCGGACCGTGATACTT-TATCGTCCTAGTCCCACCAAAT 631
Query 719 TGAAAGC 725
|||||||
Sbjct 632 TGAAAGC 638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119629886
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5