BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490675
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39070.1 | Symbols: | B-box zinc finger family protein | ch... 1210 0.0
> AT4G39070.1 | Symbols: | B-box zinc finger family protein |
chr4:18204855-18206509 REVERSE LENGTH=1023
Length=1023
Score = 1210 bits (655), Expect = 0.0
Identities = 774/829 (93%), Gaps = 17/829 (2%)
Strand=Plus/Plus
Query 36 AGAAAATAGAAAGATGAAGATTTGGTGTGATGTGTGTGATAAAGAAGAAGCATCGGTGTT 95
||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 76 AGAAAATAGAAAGATGAAGATTTGGTGTGCTGTTTGTGATAAAGAAGAAGCTTCGGTGTT 135
Query 96 TTGTTGTGCAGATGAAGCAGCTCTTTGTAATGGTTGCGATCGCCATGTTCATTTCGCCAA 155
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 TTGTTGTGCGGATGAAGCAGCTCTTTGTAATGGTTGCGATCGCCATGTTCATTTCGCCAA 195
Query 156 TAAGCTCGCCGGAAAACATCTCCGATTCTCTCTCACTTCTCCTACTTTCAAAGATGCTCC 215
||| || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 196 TAAACTAGCCGGGAAACATCTCCGGTTCTCTCTCACTTCTCCTACTTTCAAAGATGCTCC 255
Query 216 TCTTTGTGATATTTGCGGGGAGAGGCGTGCATTATTATTTTGCCAAGAAGACAGAGCAAT 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 TCTTTGTGATATTTGCGGGGAGAGGCGTGCATTATTATTTTGCCAAGAAGACAGAGCAAT 315
Query 276 ACTATGCAGAGAATGTGACATTCCTATACATCAAGCTAATGAGCACACTAAGAAACACAA 335
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 316 ACTATGCAGAGAATGTGACATTCCAATACATCAAGCTAATGAGCACACTAAGAAACACAA 375
Query 336 TAGATTCCTCCTTACGGGCGTCAAGATCTCTGCCTCCCCGTCAGCATACCCAAGAGCCTC 395
||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 376 TAGATTCCTCCTTACCGGCGTTAAGATCTCTGCCTCCCCGTCAGCCTACCCAAGAGCCTC 435
Query 396 CAATTCCAACTCCGCTGCTGCATTGGGTCGAGCCAAACCCCGACCAAAATCAGTATCGAG 455
|||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 436 CAATTCCAACTCTGCTGCTGCATTTGGTCGAGCCAAAACCCGACCAAAATCAGTATCGAG 495
Query 456 CGAGGTCCCTAGCTCTGCTTCCAATGAGGTATTTACGAGCTCTCCTTCAACGACCACGAG 515
||||||||| ||||| || |||||||||||||||||||||||| |||| |||||||||||
Sbjct 496 CGAGGTCCCGAGCTCGGCCTCCAATGAGGTATTTACGAGCTCTTCTTCGACGACCACGAG 555
Query 516 CAATTGCTATTATGGGATAGAGGAAAACTACCATCAAGTGAGCGACTCAGGGTCTGGATC 575
||||||||||||||||||||| |||||||||||||| |||||||| || ||||| |||||
Sbjct 556 CAATTGCTATTATGGGATAGAAGAAAACTACCATCACGTGAGCGATTCGGGGTCGGGATC 615
Query 576 AGGTTGTACGGGTAGCATATCGGAGTATTTGATGGAGACATTACCGGGTTGGAGAGTGGA 635
|||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 616 GGGTTGTACAGGTAGTATATCCGAGTATTTGATGGAGACATTACCGGGTTGGAGAGTGGA 675
Query 636 AGATTTGCTTGAACATCCTTCTTGTGTTTCCTATGAGGATAACATTATTACGAATAACAA 695
|||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 676 GGATTTGCTTGAACACCCTTCTTGTGTCTCCTATGAGGATAACATTATTACTAATAACAA 735
Query 696 TAACAGTGAGTCTTATAGGGTTTATGATGGTT----A---T-C-ATCA--A-GGGTTTTG 743
|||||||||||||||||||||||||||||||| | | | |||| | ||||||||
Sbjct 736 TAACAGTGAGTCTTATAGGGTTTATGATGGTTCTTCACAATTCCATCATCAAGGGTTTTG 795
Query 744 GGAACAAAAACCCTTCTCTTGAA-T-ATTTTTGTTGAATTATAGTCTTTTTTCTT-TGAA 800
||| || |||||||||||||||| | |||| ||| ||||||||||||||||| || | ||
Sbjct 796 GGATCACAAACCCTTCTCTTGAACTTATTTCTGTCGAATTATAGTCTTTTTT-TTAT-AA 853
Query 801 GTTGGGGTTTGTAATCATGAATCCAAACCAACTTATTGTTTTCGTTTTT 849
|||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 854 GTTGGGGTTTGTAATCATGAATCCAAACCAACTTGTTGTTTTCGTTTTT 902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41392937128
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5