BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490675 Length=849 Score E Sequences producing significant alignments: (Bits) Value AT4G39070.1 | Symbols: | B-box zinc finger family protein | ch... 1210 0.0 > AT4G39070.1 | Symbols: | B-box zinc finger family protein | chr4:18204855-18206509 REVERSE LENGTH=1023 Length=1023 Score = 1210 bits (655), Expect = 0.0 Identities = 774/829 (93%), Gaps = 17/829 (2%) Strand=Plus/Plus Query 36 AGAAAATAGAAAGATGAAGATTTGGTGTGATGTGTGTGATAAAGAAGAAGCATCGGTGTT 95 ||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| Sbjct 76 AGAAAATAGAAAGATGAAGATTTGGTGTGCTGTTTGTGATAAAGAAGAAGCTTCGGTGTT 135 Query 96 TTGTTGTGCAGATGAAGCAGCTCTTTGTAATGGTTGCGATCGCCATGTTCATTTCGCCAA 155 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 136 TTGTTGTGCGGATGAAGCAGCTCTTTGTAATGGTTGCGATCGCCATGTTCATTTCGCCAA 195 Query 156 TAAGCTCGCCGGAAAACATCTCCGATTCTCTCTCACTTCTCCTACTTTCAAAGATGCTCC 215 ||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 196 TAAACTAGCCGGGAAACATCTCCGGTTCTCTCTCACTTCTCCTACTTTCAAAGATGCTCC 255 Query 216 TCTTTGTGATATTTGCGGGGAGAGGCGTGCATTATTATTTTGCCAAGAAGACAGAGCAAT 275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 256 TCTTTGTGATATTTGCGGGGAGAGGCGTGCATTATTATTTTGCCAAGAAGACAGAGCAAT 315 Query 276 ACTATGCAGAGAATGTGACATTCCTATACATCAAGCTAATGAGCACACTAAGAAACACAA 335 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 316 ACTATGCAGAGAATGTGACATTCCAATACATCAAGCTAATGAGCACACTAAGAAACACAA 375 Query 336 TAGATTCCTCCTTACGGGCGTCAAGATCTCTGCCTCCCCGTCAGCATACCCAAGAGCCTC 395 ||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 376 TAGATTCCTCCTTACCGGCGTTAAGATCTCTGCCTCCCCGTCAGCCTACCCAAGAGCCTC 435 Query 396 CAATTCCAACTCCGCTGCTGCATTGGGTCGAGCCAAACCCCGACCAAAATCAGTATCGAG 455 |||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||| Sbjct 436 CAATTCCAACTCTGCTGCTGCATTTGGTCGAGCCAAAACCCGACCAAAATCAGTATCGAG 495 Query 456 CGAGGTCCCTAGCTCTGCTTCCAATGAGGTATTTACGAGCTCTCCTTCAACGACCACGAG 515 ||||||||| ||||| || |||||||||||||||||||||||| |||| ||||||||||| Sbjct 496 CGAGGTCCCGAGCTCGGCCTCCAATGAGGTATTTACGAGCTCTTCTTCGACGACCACGAG 555 Query 516 CAATTGCTATTATGGGATAGAGGAAAACTACCATCAAGTGAGCGACTCAGGGTCTGGATC 575 ||||||||||||||||||||| |||||||||||||| |||||||| || ||||| ||||| Sbjct 556 CAATTGCTATTATGGGATAGAAGAAAACTACCATCACGTGAGCGATTCGGGGTCGGGATC 615 Query 576 AGGTTGTACGGGTAGCATATCGGAGTATTTGATGGAGACATTACCGGGTTGGAGAGTGGA 635 |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 616 GGGTTGTACAGGTAGTATATCCGAGTATTTGATGGAGACATTACCGGGTTGGAGAGTGGA 675 Query 636 AGATTTGCTTGAACATCCTTCTTGTGTTTCCTATGAGGATAACATTATTACGAATAACAA 695 |||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 676 GGATTTGCTTGAACACCCTTCTTGTGTCTCCTATGAGGATAACATTATTACTAATAACAA 735 Query 696 TAACAGTGAGTCTTATAGGGTTTATGATGGTT----A---T-C-ATCA--A-GGGTTTTG 743 |||||||||||||||||||||||||||||||| | | | |||| | |||||||| Sbjct 736 TAACAGTGAGTCTTATAGGGTTTATGATGGTTCTTCACAATTCCATCATCAAGGGTTTTG 795 Query 744 GGAACAAAAACCCTTCTCTTGAA-T-ATTTTTGTTGAATTATAGTCTTTTTTCTT-TGAA 800 ||| || |||||||||||||||| | |||| ||| ||||||||||||||||| || | || Sbjct 796 GGATCACAAACCCTTCTCTTGAACTTATTTCTGTCGAATTATAGTCTTTTTT-TTAT-AA 853 Query 801 GTTGGGGTTTGTAATCATGAATCCAAACCAACTTATTGTTTTCGTTTTT 849 |||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 854 GTTGGGGTTTGTAATCATGAATCCAAACCAACTTGTTGTTTTCGTTTTT 902 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41392937128 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5