BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490678
Length=1079
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39100.1 | Symbols: SHL1 | PHD finger family protein / bromo... 1360 0.0
> AT4G39100.1 | Symbols: SHL1 | PHD finger family protein / bromo-adjacent
homology (BAH) domain-containing protein | chr4:18217939-18220282
REVERSE LENGTH=1194
Length=1194
Score = 1360 bits (736), Expect = 0.0
Identities = 864/923 (94%), Gaps = 19/923 (2%)
Strand=Plus/Plus
Query 90 TTTCAGATGCCCAAGCAAAAAGCTCCAAGGAAGCAACTCAAGTCTTATAAGCTCAAACAC 149
||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 143 TTTCAGATGCCCAAGCAAAAAGCTCCAAGGAAGCAGCTCAAGTCCTATAAACTCAAACAC 202
Query 150 ATCAACAAGACG-ATTCAAGATGGAGATGCTGTGTTGATGCGGTCGTCGGAGCCTGGGAA 208
|||||||||| | |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 203 ATCAACAAGA-GTATTCAAGAGGGAGATGCTGTGTTGATGCGGTCGTCGGAGCCTGGAAA 261
Query 209 ACCGTCGTACGTAGCGAGGGTAGAGGCGATCGAGACGGACGCGCGTGGATCGCACGCGAA 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 ACCGTCGTACGTAGCGAGGGTAGAGGCGATCGAGACGGACGCGCGTGGATCGCACGCGAA 321
Query 269 AGTTCGTGTGAGGTGGTATTATCGCCCTGAGGAATCTATCGGAGGGAGGAGACAGTTTCA 328
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 322 AGTTCGTGTGAGGTGGTATTATCGCCCTGAGGAATCTATCGGAGGGAGGAGACAATTCCA 381
Query 329 TGGAGCCAAGGAGGTTTTCCTCTCTGACCACTTCGATTTTCAAAGCGCCGATACCATCGA 388
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 382 TGGAGCCAAGGAGGTTTTTCTCTCTGACCACTTCGATTTTCAAAGCGCCGATACGATTGA 441
Query 389 AGGAAAGTGCAAGGTCCACAGTTTCAGTAGCTACACCAAACTCGACTCCGTTGGAAACGA 448
||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 442 AGGAAAGTGTAAGGTTCACAGTTTCAGTAGCTACACCAAACTTGACTCTGTTGGAAACGA 501
Query 449 CGACTTCTTCTGTCGTTTCGAGTACAATTCCGCCACCGGCGCGTTTGATCCTGACAGAGT 508
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 502 CGACTTCTTCTGTCGTTTCGAGTACAATTCCACTACCGGCGCGTTTGATCCTGACAGAGT 561
Query 509 CGCCGTGTTCTGCAAGTGTGAGATGCCGTATAACCCTGATGACTTGATGGTACAATGTGA 568
| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 562 CACCGTGTTCTGCAAGTGTGAGATGCCGTATAACCCAGATGACTTGATGGTGCAATGCGA 621
Query 569 GGAGTGTTCTGAGTGGTTTCATCCTTCTTGTATAGGAACAACAATAGAGGAAGCTAAAAA 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 GGAGTGTTCTGAGTGGTTTCATCCTTCTTGTATAGGAACAACAATAGAGGAAGCTAAAAA 681
Query 629 GCTAGATAACTTCTACTGCGAAGAGTGTTCCCCACAAGAGCAGAATTTGCATAACTCTAA 688
|| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 682 GCCAGATAACTTCTACTGCGAAGAGTGTTCCCCACAACAGCAGAATTTGCACAACTCTAA 741
Query 689 CTCAACTTCCAAAAACAGAGATGCTAAGGTGAATGGAAAGCGCAGCCTGGAGGTAACCAA 748
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 742 TTCAACTTCCAATAACAGAGATGCTAAGGTGAATGGAAAGCGCAGCCTGGAGGTAACTAA 801
Query 749 GCCGAAGAAAAAACACACTAAGCGACCAGGTTAACATAAAAACCTGTAAAGGCTATATAC 808
||||||| |||||||||||||||||||||||||||||| | ||||||||||||| |
Sbjct 802 ATCGAAGAACAAACACACTAAGCGACCAGGTTAACATAAA--CTTGTAAAGGCTATAGA- 858
Query 809 ATAAATCTGGTTGGGTGAGT-TGAGTATCAATCGTGTAATCAACAAAGGTGGTTT-GTTT 866
|| ||||||||| ||||| |||||||||||||||||||| ||||||||||||| ||||
Sbjct 859 -TA--TCTGGTTGG-TGAGTCTGAGTATCAATCGTGTAATCTACAAAGGTGGTTTTGTTT 914
Query 867 TCTTTCTCTCACTAGttttttcgttt-ttAAAGAATGAGGGTTTAGGTT-GTTGGCTTGA 924
|||||| ||| ||||||||||| ||| ||||| |||||||||||||||| ||||||||||
Sbjct 915 TCTTTCCCTCTCTAGTTTTTTC-TTTCTTAAAAAATGAGGGTTTAGGTTTGTTGGCTTGA 973
Query 925 TTATTGTATAATTTATATGTATAGCCTATGGT--TT-CTCGTCTCCTTTAGTTGTCACAT 981
|| |||||||||||||||||||||| |||||| || ||| |||||||||||||||||||
Sbjct 974 TTGTTGTATAATTTATATGTATAGCGTATGGTGGTTTCTCATCTCCTTTAGTTGTCACAT 1033
Query 982 G-AAA-TTTGGGTTAAATGGTTT 1002
||| ||||||| |||||||||
Sbjct 1034 ATAAAATTTGGGTAAAATGGTTT 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52861173885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5