BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490680
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39120.1 | Symbols: IMPL2, HISN7 | myo-inositol monophosphat... 1657 0.0
> AT4G39120.1 | Symbols: IMPL2, HISN7 | myo-inositol monophosphatase
like 2 | chr4:18220589-18227988 REVERSE LENGTH=1664
Length=1664
Score = 1657 bits (897), Expect = 0.0
Identities = 1016/1073 (95%), Gaps = 10/1073 (1%)
Strand=Plus/Plus
Query 1 TTCCGTCAACTTCCCACTCGTAGCAAAATGTTAGCTCAGTCGCACTTCTTCTCTAAGTCC 60
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCCGTGAACTTCCCACTCATAGCAAAATGTTAGCTCAGTCGCACTTCTTCTCTAAGTCC 120
Query 61 TTCGATCTGATTCCGCCACCGTCTCCGGTGTTGCGGTCTG-AAATTTCC-TCTCTTCGTC 118
||||||||||||||||||| |||||||| ||||||||||| ||| ||| |||||||||
Sbjct 121 TTCGATCTGATTCCGCCACAGTCTCCGGCGTTGCGGTCTGCAAA--TCCTTCTCTTCGTA 178
Query 119 TCTCTTCTTCTTATAGAAACAGCCGATTCTCCTTT-TTATTTTCTTCTGCAATCGCTGTT 177
|||||||||||||||| |||||||| || |||||| || | |||||||||||| ||||||
Sbjct 179 TCTCTTCTTCTTATAGTAACAGCCGCTTATCCTTTCTT-TCTTCTTCTGCAATTGCTGTT 237
Query 178 CCCGTCTCCCGCCGTCGGATCTCCCTGACAATGGCTTCGAACTCTAAACGGCCTAACGTA 237
|||||||||||||||||| | | |||||| |||||||| ||||| |||||||||||| ||
Sbjct 238 CCCGTCTCCCGCCGTCGGTTTTGCCTGACTATGGCTTCAAACTCAAAACGGCCTAACATA 297
Query 238 AGCGAA-GAGTCTCCTTCGAAACTGAGCGATACTGAGCTGGATCGATTCGCCGCTGTAGG 296
||| || |||||||||||| |||| ||||| |||||||||||||||||||||||||| ||
Sbjct 298 AGC-AACGAGTCTCCTTCGGAACTTAGCGACACTGAGCTGGATCGATTCGCCGCTGTGGG 356
Query 297 TAATGCATTAGCTGACGCTTCTGGCGAGGTTATCAGAAAGTATTTCCGGAAGAAATTCGA 356
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 357 AAATGCATTAGCTGACGCTTCCGGCGAGGTTATCAGAAAGTATTTCCGGAAGAAATTCGA 416
Query 357 CATTGTTGATAAAGATGACATGAGTCCTGTTACAATCGCTGATCAAATGGCTGAAGAGGC 416
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 417 CATTGTTGATAAAGATGATATGAGCCCTGTTACAATCGCTGATCAAATGGCTGAAGAGGC 476
Query 417 AATGGTTTCGATTATATTTCAGAATCTCCCTTCTCATGCTATATTTGGTGAGGAGAAGGG 476
||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 477 AATGGTTTCCATTATATTCCAGAATCTCCCTTCTCATGCTATATATGGTGAGGAGAAGGG 536
Query 477 TTGGAGATGCAAAGAAGAATCTGCAGACTATGTTTGGGTTTTGGATCCAATCGATGGAAC 536
||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 537 TTGGAGATGCAAAGAGGAATCTGCAGACTATGTTTGGGTTTTGGACCCAATCGACGGAAC 596
Query 537 AAAGAGCTTTATTACAGGGAAACCCGTGTTTGGTACGCTGATAGCTCTGCTCTACAAAGG 596
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 597 AAAGAGCTTTATTACAGGGAAACCCGTGTTTGGTACGCTGATTGCTCTGCTCTACAAAGG 656
Query 597 TAAACCGATTCTAGGACTGATTGATCAGCCTATTCTAAAAGAGAGATGGATAGGAATAAA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 657 TAAACCGATTCTAGGACTGATTGATCAGCCTATTCTAAAAGAGAGATGGATAGGAATGAA 716
Query 657 TGGACGAAAAACTAAATTAAATGGGGAGGATATCTCAACGCGATCTTG-CCCAAATTTAT 715
|||| ||| ||||||| |||| |||||||||||||||||||||||||| |||||| ||||
Sbjct 717 TGGAAGAAGAACTAAACTAAACGGGGAGGATATCTCAACGCGATCTTGCCCCAAA-TTAT 775
Query 716 CACAAGCATATTTATACACCACTAGTCCACATCTTTTCAGTGGAGAGGCAGAAAAGGCAT 775
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 776 CACAAGCATATTTATACACCACTAGCCCACATCTTTTCAGTGAAGAGGCAGAAAAGGCAT 835
Query 776 ATGCTCGAGTTAGAGACAAGGTGAAAGTGCCATTATACGGCTGTGATTGTTATGCTTACG 835
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 836 ATTCTCGAGTTAGAGACAAGGTGAAAGTGCCCTTATACGGCTGTGATTGTTATGCTTACG 895
Query 836 CTCTCCTGGCTTCTGGATTTGTCGATCTTGTCATTGAATCCGGTCTAAAGCCATATGATT 895
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 896 CTCTCCTGGCTTCTGGATTTGTCGATCTTGTTATTGAATCCGGTCTAAAGCCATATGATT 955
Query 896 TCCTTGCTCTGGTGCCTGTAATAGAAGGCGCTGGAGGTACCATAACCGATTGGACTGGTA 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TCCTTGCTCTGGTGCCTGTAATAGAAGGCGCTGGAGGTACCATAACCGATTGGACTGGTA 1015
Query 956 ACCCATTTCTGTGGGAGGCTTCATCCAGTGCAGTTGCGACAAGCTTTAATGTAGTTGCAG 1015
| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AACGATTTCTGTGGGAAGCTTCATCCAGTGCAGTTGCGACAAGCTTTAATGTAGTTGCAG 1075
Query 1016 CAGGAGATTCAGACATTCATCAGCAGACTTTGGAGTCACTTGAGTGGCAGTGA 1068
|||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1076 CAGGAGATTCAGACATTCATCAGCAGGCTTTGGAGTCACTTGAGTGGCATTGA 1128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5