BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490685
Length=1701
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39140.1 | Symbols: | RING/U-box superfamily protein | chr4... 2254 0.0
AT2G21500.2 | Symbols: | RING/U-box superfamily protein | chr2... 719 0.0
> AT4G39140.1 | Symbols: | RING/U-box superfamily protein | chr4:18229331-18232020
REVERSE LENGTH=1703
Length=1703
Score = 2254 bits (1220), Expect = 0.0
Identities = 1450/1554 (93%), Gaps = 43/1554 (3%)
Strand=Plus/Plus
Query 171 TTATAAGCACTGTCTTTGCGTAGTGCTTAGTAGTTGCGACTTGCGAGTTATGGGGAATGC 230
||||||||||||||||||| |||||||||||| | | ||| |||||||||||||||
Sbjct 169 TTATAAGCACTGTCTTTGCATAGTGCTTAGTA---G-G---TGCTAGTTATGGGGAATGC 221
Query 231 ATGTTGTGTTGCTGCTCGAGACAAAATGGTGGTGCCTAATTCATCAGCTGGTGAGAATTT 290
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 GTGTTGTGTTGCTGCTCGAGACAAAATGGTGGTGCCTAATTCATCAGCTGGTGAGAATTT 281
Query 291 GCAGAGGAGCAATGTCAGGCATTCTCCGACTTGGAGTTTCCGTTGGGATAATAGAGGACG 350
||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||| ||
Sbjct 282 GCAGAGGAGCAATATCAGGCATTCTCCGTCTTGGAGTTTCCGGTGGGATAATAGAGGGCG 341
Query 351 TGTAGCTGGTGAAGAAACCTCTCTCAGTTGGTTATCTGATGGGATTAGTCGGAACGATGG 410
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 342 TGTAGCTGGTGAAGAAACTTCTCTCAGTTGGTTATCTGATGGTATTAGTCGGAACGATGG 401
Query 411 CTCTGAGATCAAATTTGAATCTGCTTTTGTATCATCTGAAGGTTCCCCTTTGGACAGTTT 470
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 402 CTCTGAGATCAAATTTGAATCTGCTTTCGTATCATCTGAAGGGTCCCCTTTGGACAGTTT 461
Query 471 TCGGACACAGGCATTGCAGAAATCCCCTGCCTCAGATCTATCTTTTCCAAGAAATTCTTC 530
|||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 462 TCGGACACAGACATTGCAAAAATCTCCTGCCTCAGATCTATCTTTTCCAAGAAATTCTTC 521
Query 531 CATGAATACAGTCTTCGAACAGAAAGAAAATGTTTCAACAGAGTCTGCAGCACCATCATA 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 CATGAATACAGTCTTCGAACAGAAAGAAAATGTTTCAACAGAGTCTGCAGCACCATCATA 581
Query 591 TCCATCTCCTGCAAAATTGTCTCTTTCACTGGCTTCACAACCATCATCTTTCCCTACATC 650
|| |||||||||| | |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 582 TCTATCTCCTGCACAGTTGTCTCTTTCACTAGCTTCACAACCATCATCTTTCCCTACGTC 641
Query 651 ACCACTTTCGTCCCAAAGCTACTTGCACCCTGCAAGTTCATCGACACTTAAACTGACACA 710
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 642 ACCACTTTCGTCCCAAAGCTACTTGCACCCTGCAAGTTCATCTACACTTAAACTGACACA 701
Query 711 TCGCCCTCGTCTATCAAAGCAAGTCTCAGATGGTCAAATCTATGGTCCGAACTCACTAAG 770
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 702 GCACCCTCGTCTATCAAAGCAAGTCTCAGATGGTCAAATCTATGGTCAGAACTCACTAAG 761
Query 771 TAGAAACTCAGCAACTGAAGAGAGGCAGGGAACTCCTTTGAGATATGATTCTTCTCAGTC 830
||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 762 TAGAAGCTCAGCAACTGAAGAGAGGCAGGGAACTCCTACGAGATATGATTCGTCTCAGTC 821
Query 831 TGGACCATCTGAAGGTTGGTCACTGCAAGCCTTTTCTGAAATGATGTCATCTTCTCGCAG 890
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 822 TGGACCATCTGAAGGTTGGTCTCTACAAGCCTTTTCTGAAATGATGTCATCTTCTCGCAG 881
Query 891 CAACGAAC-CTTTGTCTTATGA---T-A--A---TGATTGCTTTGGGCTTCAACGTGACA 940
|||| || || |||||||||| | | | |||||| |||||||||||||||||||
Sbjct 882 CAAC-AAGGCTCTGTCTTATGACAATTATGACAATGATTGTTTTGGGCTTCAACGTGACA 940
Query 941 AGATAGACCATCATGGCAACCGAATGTCCAAGCATCAGCAGCAAACTTGCGGTGCTTGCT 1000
|||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 941 AGATTGACCATCATGGCAACCGGATGTCCAAGCATCAGCAGCATACCTGCGGTGCTTGCT 1000
Query 1001 CTAGACCCTTGTCAGAGAAATCCTTGTGGAGCAGCCAAAAGATCTTCATGACCAACGAGC 1060
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1001 CTAGACCCTTGTCGGAGAAATCCTTGTGGAGCAGCCAAAAGATCTTTATGACCAACGAGC 1060
Query 1061 TCTCTGTGTCTGCAATTCTAGCTTGTGGGCATGTCTATCATGGGGAGTGTTTAGAGCAGA 1120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 TCTCTGTATCTGCAATTCTAGCTTGTGGGCATGTCTATCATGGGGAGTGTTTAGAGCAGA 1120
Query 1121 TGACGCCGGAAATCGATAAATTCGACCCTTCATGCCCAATCTGTACAATGGGTGAGAAGA 1180
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1121 TGACGCCGGAAATTGATAAATTCGACCCTTCATGCCCAATATGTACAATGGGTGAGAAGA 1180
Query 1181 AAACGGCGAAGCTGTCAGAGAAAGCGTTGAAAGTAGAGATGGATTTGAAAGCTCGACACA 1240
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1181 AAACAGCGAAGCTGTCAGAGAAAGCGTTGAAAGTAGAGATGGATTTGAAAGCGAGACACA 1240
Query 1241 ACAAACGACTCAGAAACCGAGTTTTGGACAGTGACTTTGATTGCGATGATTTTGTAATGT 1300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 ACAAAAGACTCAGAAACCGAGTTTTGGACAGTGACTTTGATTGCGATGATTTTGTAATGT 1300
Query 1301 TTGATCACAGCCACAGGACAGCAGCAGCAACAGCAAGCAAGAGCCCTAAACT-GCTCTCG 1359
|||| |||||||||||||||||||||||| |||||||||||||||| ||| | ||||
Sbjct 1301 TTGACCACAGCCACAGGACAGCAGCAGCA---GCAAGCAAGAGCCCTAGACTCG-TCTCA 1356
Query 1360 AGTTCGAGTGCCAAAAGCTATTCTGCAAAGCCTTTCTTGGCTCGACACTTCTCTTTCGGG 1419
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1357 AGTTCGAGTGCTAAAAGCTATTCAGCAAAGCCTTTCTTGGCTCGACACTTCTCTTTCGGG 1416
Query 1420 TCCAGAAGTAATTATAAATCCCCTAAAGAGAATCTTCCAGTGAAAAAGAAAGGCTTCTTC 1479
||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1417 TCCAGAAGTAACTATAAATCCCCTAAAGAAAATCTTCCTGTGAAAAAGAAAGGCTTCTTC 1476
Query 1480 TGGACCAAATCCAGCAAAATATGAACTTCTTTCGCGGTGCTCTGTACTTTGACTGCTGTC 1539
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1477 TGGACCAAATCCAGCAAAATATGAACTTATTTCGCCGTGCTCTGTACTTTGACTGCTGTC 1536
Query 1540 TGAAGCATAGAAGTCGacacacacacacacacCGGGACACGGTACCATTCAATTAAAAGC 1599
|||||||||||||||||||||||| | ||| |||| ||||||||| ||||||||
Sbjct 1537 TGAAGCATAGAAGTCGACACACAC-CG------GGG-CACGATACCATTCAGTTAAAAGC 1588
Query 1600 AGGCTATTTGTTGTTACACACTTGCTCAACAAA-T-TT-T--TTGTTTT-------AATG 1647
|| ||||||| |||||||||||||||||||||| | || | ||||||| ||||
Sbjct 1589 AGTCTATTTGCTGTTACACACTTGCTCAACAAAGTCTTCTCATTGTTTTTTTTTTTAATG 1648
Query 1648 AATACTTAATTTTCACACATGTAAAGTTACAAATTTAGATTACAAGGTTGGGGA 1701
|||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1649 AATACTAAATTTTCACACATGTAAAGTTACAAATTTAGATTACAAGGTTGGGGA 1702
Score = 137 bits (74), Expect = 3e-31
Identities = 117/135 (87%), Gaps = 13/135 (10%)
Strand=Plus/Plus
Query 48 TTTCCTTTTTCTCCCTTTCTCACTCTAACAGACCCATC----GCTCTCTCTCCGTGAAAC 103
|||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1 TTTCATTTTTCTCCCTTTCTCACTCTAACAGACCCATCCATCGCTCTCTCTCTGTGAAAC 60
Query 104 CGTCATCTTCCTCTTCTCCGGCGACGTTTTGAGAC-TTCTGGGAGCAG---C--T--AGA 155
||||||||||||||||||||||||||||| || |||||||||||| | | |||
Sbjct 61 TATCATCTTCCTCTTCTCCGGCGACGTTTTG-GAAGTTCTGGGAGCAGGTTCGATCTAGA 119
Query 156 AAGGGATTGTTGTGC 170
|||||||||||||||
Sbjct 120 AAGGGATTGTTGTGC 134
> AT2G21500.2 | Symbols: | RING/U-box superfamily protein | chr2:9207669-9210231
REVERSE LENGTH=1771
Length=1771
Score = 719 bits (389), Expect = 0.0
Identities = 1053/1350 (78%), Gaps = 140/1350 (10%)
Strand=Plus/Plus
Query 216 AGTTATGGGGAATGCATGTTGTGTTGCTGCTCGAGACAAAATGGTGGTGCCTAATTCATC 275
||||||||||||||| |||||||||||| |||||||||||||||| ||||||||| ||||
Sbjct 206 AGTTATGGGGAATGCTTGTTGTGTTGCTACTCGAGACAAAATGGTTGTGCCTAATACATC 265
Query 276 AGCTGGT-GAGAATTTGCAGAGGAGCAATGTCAGGCATTCTCC-GACTTGGAGTTTCCGT 333
||| || |||||||| || || | |||||| ||| ||||||| || ||||| |||||
Sbjct 266 AGC-AGTCGAGAATTTTCAAAGAAACAATGTGAGGTATTCTCCTAAC-TGGAGCTTCCGA 323
Query 334 TGGGATAAT--A-GAGGACGTGTAGCTGGTGAAGAAACCTCTCTCAGTTGGTTATCTGAT 390
||||||||| | ||||||| || || || ||||| |||||| | |||| ||||||||||
Sbjct 324 TGGGATAATAGAGGAGGACGCGTGGCAGGGGAAGAGACCTCTGTTAGTTTGTTATCTGAT 383
Query 391 GGGATTAGTCGGAACGATGGCTCTGA-GATCAAATTTGAATCTGCTTTTGTATCATCTGA 449
|||||||||| ||||||| |||||| | |||||| |||| ||||| |||||||||| |
Sbjct 384 CGGATTAGTCGTAACGATGTCTCTGATG-TCAAATCTGAAACTGCTCTTGTATCATCACA 442
Query 450 AGGTTCCCCTTTGGACAGTTTTCGGACACAGGCATTGCAGAAATCCCCTGCCTCAGATCT 509
|||||| |||||||||| ||||| ||| ||| ||| ||||||||| ||||| || ||||
Sbjct 443 AGGTTCTCCTTTGGACAATTTTCAGACGCAGTCATGGCAGAAATCTCCTGCTTCTGATCA 502
Query 510 ATC-TTTTCCAAGAAATT-CTTCCA-TGAATACAGTCTTC-GAACAG--------AAAGA 557
||| |||| |||| |||| | || | ||| | | ||| || |||||| ||| |
Sbjct 503 ATCATTTT-CAAG-AATTGCCTCTATTGACT-CTGTC-TCTGAACAGATCACCCAAAAAA 558
Query 558 -AAATGTTTCAACAGAGTCTGCAGCACCATCATATCCATCTCCTGCAAAATTGTCTCTTT 616
||||| |||||| || || | | || |||||||||||||||||| |||||||||
Sbjct 559 CAAATGATTCAACCGACCCT--A-C-TTAT--TATCCATCTCCTGCAAAACTGTCTCTTT 612
Query 617 CACTGGCTTCACAACCATCATCTTTCCCTA-CATCACCACT-T----TC-GTCCCA-AAG 668
|| ||||||| ||||||||||| ||| | | |||||||| | || |||||| |
Sbjct 613 CATTGGCTTCTCAACCATCATCCTTCTC-AGTGTCACCACTGTCAAGTCAGTCCCACTTG 671
Query 669 CTACTTG-CACCCTGCAAGTTCATCGACACTTAAA-CTGACACATCGCCCTCGTCTATCA 726
| | || || |||||||||||||| || ||||| ||||||| | |||||||||||||
Sbjct 672 CCA-ATGCCA-CCTGCAAGTTCATC-CCAATTAAAGCTGACACCGCCCCCTCGTCTATCA 728
Query 727 AAGCAAGTCTCAGATGGTCAAATCTATGG-TCCGAACTCACTAAGTAGAAACTCAGCAAC 785
|||||||||||| |||||||||||| ||| | | | ||||| || |||| |||||||||
Sbjct 729 AAGCAAGTCTCATATGGTCAAATCTTTGGATTC-ACCTCACCGAGCAGAAGCTCAGCAAC 787
Query 786 TGAAGAGAGGCAGGGAACTCCTTTGAGATATGATTCTTCTCAGTCTGGACCATCTGAAGG 845
||||||||||| || | || |||| ||||||||| | | | ||
Sbjct 788 TGAAGAGAGGC-TGG---------G-GA-ATGA---ATCTCAGTCT-G---A--T---GG 823
Query 846 TTGGT-CACTGCAAGCCTTTTCTGAAATGATGTCATCTTCTCGCAGCAACGAACCTTTG- 903
||||| || ||||||| ||||||||||||||| | | ||||||||| | || | |||
Sbjct 824 TTGGTCCA-TGCAAGCTTTTTCTGAAATGATGGCGTATTCTCGCAG--A-GAGTC-TTGC 878
Query 904 TCTTATGATAATGATTGCTTTGGGCTTCAACGTGACAAGATAGACCATCATGGCAA-CCG 962
||||| ||||| || ||||||||||||| ||||||||||||||| ||| ||| || |
Sbjct 879 TCTTACGATAACGAGTGCTTTGGGCTTCGTCGTGACAAGATAGACAATCTTGG-AAGTAG 937
Query 963 AATGTCCAA-GCATCAGCAGCAAACTTGCGGTGCTTGCTCTAGACCCTTGTCAGAGAAAT 1021
|| |||||| | ||||||| |||| || ||||||||||| ||| ||||||| |||||||
Sbjct 938 AAAGTCCAATG-ATCAGCA--AAAC-TGTGGTGCTTGCTCGAGATCCTTGTCTGAGAAAT 993
Query 1022 CCTTGTGGAGCAGCCAAAAGATCTTCATG--ACCAACGAGCTCTCTGT-GTCTGCAATTC 1078
| |||| ||| |||||||| ||||| || || ||||||||||| || | |||| ||||
Sbjct 994 CTTTGTTGAGTAGCCAAAAAATCTT--TGCCACTAACGAGCTCTCCGTAG-CTGCGATTC 1050
Query 1079 TAGCTTGTGGGCATGTCTATCATGGGGAGTGTTTAGAGCAGATGACGCCGGAAATCGATA 1138
|||| |||||||| ||||||||| |||||||||||||||||||| || |||||||| |
Sbjct 1051 TAGCATGTGGGCACGTCTATCATTCAGAGTGTTTAGAGCAGATGACACCTGAAATCGACA 1110
Query 1139 AATTCGACCCTTCATG-CCCAATCTGTACAATGGGTGAGAAGAAAAC-GGCGAAGCTGTC 1196
||||||| ||||| || ||| ||||| ||| |||||||||||||||| | || |||||
Sbjct 1111 AATTCGATCCTTCTTGTCCC-ATCTGCACACTGGGTGAGAAGAAAACATTC-AAACTGTC 1168
Query 1197 AGAGAAAGCGTTGAAA-GTAGAGATGGATTTGAAAGCTCGACACAACAA-ACGACTCAGA 1254
|| ||||| || ||| | ||| |||| |||||||| |||||||||| | |||| |||
Sbjct 1169 GGAAAAAGCATT-AAAGGCAGATTTGGAAATGAAAGCTAGACACAACAAGA-GACTAAGA 1226
Query 1255 AACCGAGTTTTGGACAGTGACTTTGATTGCGATGATTTTGT-AATGTTTGATCACAGCCA 1313
||||| ||| |||||| | | || | || | ||||| || |||| || ||| |||
Sbjct 1227 AACCGCGTTGTGGACA--G-C---GA-T--GA--A-TTTGTCAA-GTTTAATAACAACCA 1273
Query 1314 CAGGA-CAGCAGCAGCA-ACAGCAA-GCAAGAGCCCTAAA-CTGCTCTCGAGTTCGAG-- 1367
| | | | |||| || | ||| || | || | ||| ||| ||| | || ||||| ||
Sbjct 1274 C-GAAGCGGCAGTAGGATACA--AAGGTAA-AACCCCAAAGCTGATATCAAGTTCAAGCT 1329
Query 1368 TGCCAAAAGCTATTCTGCAAAGCCTTT-CTTGGCTCGACACTTCTCTTTCGGGTCCAGAA 1426
|| | ||||||||| |||||||||| ||| ||| ||||||||||||||||||||||||
Sbjct 1330 TG--AGAAGCTATTCCCCAAAGCCTTTCCTT-GCTAGACACTTCTCTTTCGGGTCCAGAA 1386
Query 1427 GTAAT--TAT-AAATCCCCTAAAGAGAATC-TTCC---AG-TGA---A-AAAGAAAGGCT 1474
||||| | | |||||||| ||||||| || |||| || | | |||||||||||
Sbjct 1387 GTAATAGTGTTAAATCCCCAAAAGAGATTCATTCCCCGAGCTCTCTTAGAAAGAAAGGCT 1446
Query 1475 TCTTCTGGACCAAATCCAGCAAAATATGAA 1504
|||| ||||||||||| |||||||| ||||
Sbjct 1447 TCTTTTGGACCAAATCTAGCAAAATTTGAA 1476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84085912875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5