BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490686
Length=1060
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39150.1 | Symbols: | DNAJ heat shock N-terminal domain-con... 1600 0.0
AT2G21510.1 | Symbols: | DNAJ heat shock N-terminal domain-con... 854 0.0
> AT4G39150.1 | Symbols: | DNAJ heat shock N-terminal domain-containing
protein | chr4:18233485-18236064 REVERSE LENGTH=1255
Length=1255
Score = 1600 bits (866), Expect = 0.0
Identities = 977/1030 (95%), Gaps = 9/1030 (1%)
Strand=Plus/Plus
Query 1 GCAAGGCAAGTTCATCCAGACAAGAACCATGGTGATCCTCAAGCTGCTAAAAACTTTCAG 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 139 GCAAGGCAAGTTCATCCAGACAAGAACCCTGGTGATCCTCAAGCTGCTAAAAACTTTCAG 198
Query 61 ATACTAGGTGAAGCTTACCAAGTTCTTA-GCGATCCGGAGAAGCGAACAGCTTATGACAA 119
||||||||||||||||| ||||||| || |||||||||||||||| ||||||||||||||
Sbjct 199 ATACTAGGTGAAGCTTATCAAGTTC-TAGGCGATCCGGAGAAGCGTACAGCTTATGACAA 257
Query 120 ATTTGGAAAACAAGGGGTTCAACAGGATGCAATGGTTGATCCTGCAGCTGTGTTTGGTAT 179
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 ATATGGAAAAGAAGGGGTTCAACAGGATGCAATGGTTGATCCTGCAGCTGTGTTTGGTAT 317
Query 180 GCTCTTTGGTAGCGAGCTCTTTGAGGAGTACGTTGGGCAACTTGCACTTGCTTCAATAGC 239
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||
Sbjct 318 GCTCTTTGGTAGCGAGCTCTTTGAGGATTACGTTGGGCAACTTGCCCTTGCTTCAGCAGC 377
Query 240 CTCAATCGATGCTGAATTAGAATCTTATGAGCCTGAGATTAGAAAACAGATGCTTCGGGA 299
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 378 CTCAATCGATGCTGAATTAGAATCGTATGAGCCTGAGATTAGAAAACAGATGCTTCAGGA 437
Query 300 AAAGATCAAAGCGATGCAAAACGATAGAGTAGACAAGCTCGTCGCTACACTGAAAATCAA 359
||||||||||||||| ||||| || |||||||||||||||||| ||||||||||||||||
Sbjct 438 AAAGATCAAAGCGATACAAAAGGACAGAGTAGACAAGCTCGTCACTACACTGAAAATCAA 497
Query 360 ACTCGAACCATTCGTGGAAGGACAAACTGATGAATTTGTGAACTGGGCCACCGCAGAGGC 419
||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 498 ACTTGAACCATTCGTGGAAGGACAAACCGATGAATTTGTAAATTGGGCCACCGCAGAGGC 557
Query 420 AAAACGGCTTTCTACAGCTGGTTTTGGTGAGGCAATGCTTCACACCGTTGGATACATTTA 479
|||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 558 AAAACGGCTTTCAACAGCTGGTTTTGGTGAGGCAATGCTTCACACAGTTGGTTACATTTA 617
Query 480 CACTAGAAAAGCTTCTAAAGAACTCGGAAAGGATAAACGTTACATGAAAGTACCTTTTTT 539
||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 618 CACTAGAAAAGCTGCTAAAGAACTCGGAAAGGATAAACGTTTCATGAAAGTACCGTTTTT 677
Query 540 AGCCGAATGGGTTCGTGACAAAGGCCACCAAGTAAAATCTCAAGTGATGGCTGCTTCGGG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 678 AGCCGAATGGGTTCGTGACAAAGGCCACCAAGTAAAATCTCAAGTGATGGCTGCTTCTGG 737
Query 600 TGCGGTC-TCGTTGCTTCAGTTGCAGGATGAAATGAGCAAGCTGAATCATGGAGAGAACA 658
||||||| | || |||| ||||||||||||| |||||||||||||||| ||||||||||
Sbjct 738 TGCGGTCAAC-TTACTTCTGTTGCAGGATGAAGTGAGCAAGCTGAATCAGGGAGAGAACA 796
Query 659 AAGAAGAGAATATTCAGAAAGCCATTGAAGCTAAAAAAGATGCAATGCTTCAATCCCTTT 718
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 797 AAGAAGAGAATATTCAGAAAGCCATTGAAGCTAAAAAGGATGCAATGCTTCAATCCCTTT 856
Query 719 GGCAAATCAATGTTGTTGACATCGAATCAACCTTATCTCGTGTCTGCCAAGCGGTGCTTA 778
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 GGCAAATAAATGTTGTTGACATCGAATCAACCTTATCTCGTGTCTGCCAAGCGGTGCTTA 916
Query 779 AAGATCCAAGTGTTTCAAAGGATGTTCTTCGAGCTAGAGCTAGAGGATTGAGGAAGCTCG 838
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 917 AAGATCCAAGTGTTTCAAAGGATGTTCTTCGAGCTAGAGCTAGAGGATTGAGGAAGCTGG 976
Query 839 GAAACATTTTTCAGGGTTCTAAGAAACCGTATTCTAGAGAAAACAGCTTGCGTCATGAAG 898
| ||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 977 GTAACGTTTTCCAGGGTTCTAAGAAAGCGTATTCTAGAGAAAACAGCTTGCGTCATGAAG 1036
Query 899 AAGAAGA-AGCCACCGTGAAACTTCACACCGGAGATTCCTCGAAGCCGGCAACTTAAACC 957
||||| | || | |||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1037 AAGAA-ACAGG-A--GTGAAAGTCCACACCGGAGATTCCTCGAAGCCGGCAACTTAAACC 1092
Query 958 AAGGTTCGAATCTATCGGTTCGAAACAGAACAGTGTGGTTTTGTGAGAATTCTTGAATGT 1017
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1093 AAGGTTCGAATCTATCGGTTCGAAACAGAACAATCAGGTTTTGTGAGAATTCTTGAATGT 1152
Query 1018 ATTGTAACGA 1027
||||||||||
Sbjct 1153 ATTGTAACGA 1162
> AT2G21510.1 | Symbols: | DNAJ heat shock N-terminal domain-containing
protein | chr2:9210655-9213058 REVERSE LENGTH=1324
Length=1324
Score = 854 bits (462), Expect = 0.0
Identities = 797/957 (83%), Gaps = 30/957 (3%)
Strand=Plus/Plus
Query 1 GCAAGGCAAGTTCATCCAGACAAGAACCATGGTGATCCTCAAGCTGCTAAAAACTTTCAG 60
|||||| ||||||||||||||||||||| ||| || ||||||||||||||||||||||||
Sbjct 185 GCAAGGAAAGTTCATCCAGACAAGAACCCTGGAGACCCTCAAGCTGCTAAAAACTTTCAG 244
Query 61 ATACTAGGTGAAGCTTACCAAGTTCTTAGCGATCCGGAGAAGCGAACAGCTTATGACAAA 120
| ||||||| ||||| || ||||| ||| ||||||| |||||| ||||||||||||||
Sbjct 245 GTTTTAGGTGAGGCTTATCAGGTTCTAAGCAATCCGGATAAGCGAGCAGCTTATGACAAA 304
Query 121 TTTGGAAAACAAGGGGTTCAACAGGATGCAATGGTTGATCCTGCAGCTGTGTTTGGTATG 180
| ||| ||| ||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 305 TATGGCAAAGAAGGGGTCCAACAGGATGCAATGGTTGATCCTGCAGCTGTATTTGGTATG 364
Query 181 CTCTTT-GGTAGCGA-GCTCTTTGAGGAGTACGTTGGGCAACTTGCACTTGCTTCAATAG 238
|| ||| || ||||| | ||||||| || |||||||| || ||||||||||||| | | |
Sbjct 365 CT-TTTCGGAAGCGAAG-TCTTTGAAGAATACGTTGGCCAGCTTGCACTTGCTT-ATTTG 421
Query 239 CC-TCAATCGATGCTGAATTAGAATCTTATGAGCCTGAGATTAGAAAACAGATGCTTCGG 297
| || ||||| ||||| |||||||| |||| ||||| || ||||| || |||||||
Sbjct 422 GCATCTATCGAAGCTGACTTAGAATCACATGACCCTGAAATCAGAAAGCAAATGCTTCAA 481
Query 298 GAAAAGATCAAAGCGATGCAAAACGATAGAGTAGACAAGCTCGTCGCTACACTGAAAATC 357
|| ||||||||||| | ||||| || || | ||||||||||| ||||||| |||||| |
Sbjct 482 GACAAGATCAAAGCTCTTCAAAAGGAGAGGGAAGACAAGCTCGCCGCTACATTGAAAAAC 541
Query 358 AAACTCGAACCATTCGTGGAAGGACAAACTGATGAATTTGT-GAACTGGGCCACCGCAGA 416
||||| ||||| || |||||| ||||||| ||||||||| | ||| ||||| | || |||
Sbjct 542 AAACTTGAACCCTTTGTGGAAAGACAAACAGATGAATTTATCGAA-TGGGCAAACGAAGA 600
Query 417 GGCAAAACGGCTTTCTACAGCTGGTTTTGGTGAGGCAATGCTTCACACCGTTGGATACAT 476
|||||| ||||||||| | || |||||||| ||||||||| | || || |||| |||||
Sbjct 601 GGCAAAGCGGCTTTCTTCTGCCGGTTTTGGCGAGGCAATGATGCATACTATTGGTTACAT 660
Query 477 TTACACTAGAAAAGCTTCTAAAGAACTCGG-AAAGGATAAACGTTACATGAAAGTACCTT 535
|||||| ||||||||| |||||||| |||| |||| | || || || ||||||||||| |
Sbjct 661 TTACACAAGAAAAGCTGCTAAAGAAATCGGGAAAG-ACAAGCGATATATGAAAGTACCAT 719
Query 536 TTTTAGCCGAATGGGTTCGTGACAAAGGCCACCA-AGTAAAATCTCAAGTGATGGCTGCT 594
| ||||| |||||||| ||||||||||||||||| | | |||||||||||||||||||||
Sbjct 720 TCTTAGCTGAATGGGTGCGTGACAAAGGCCACCATA-TGAAATCTCAAGTGATGGCTGCT 778
Query 595 TCGGGTGCGGTCTCGTTGCTTCAGTTGCAGGATGAAATGAGCAAGCTGAAT---CAT--- 648
|| |||||||| ||||| |||||||||||||||||| | | |||| ||||| ||
Sbjct 779 TCTGGTGCGGTTTCGTTACTTCAGTTGCAGGATGAAGTAAACAAGTTGAATGAACACCAA 838
Query 649 GGAGAGAACAAAGAAGAGA-ATATTCAGAAAGCCATTGAAGCTAAAAAAGATGCAATGCT 707
|||||||||||||| || | ||||||||||||| ||||||||||||| ||||| ||||
Sbjct 839 GGAGAGAACAAAGAGGA-ACATATTCAGAAAGCTATTGAAGCTAAAATGGATGCTTTGCT 897
Query 708 TCAATCCCTTTGGCAAATCAATGTTGTTGACATCGAATCAAC-CTTATCTCGTGTCTGCC 766
|||||| |||||||||||||||||| | ||||||||||| || || ||||||||| ||||
Sbjct 898 TCAATCTCTTTGGCAAATCAATGTTCTCGACATCGAATCCACGCT-ATCTCGTGTTTGCC 956
Query 767 AAGCGGTGCTTAAAGATCCAAGTGTTTCAAAGGATGTTCTTCGAGCTAGAGCTAGAGGAT 826
|| | ||||||||||||||||||||||| |||||||||||||||||| | || | ||||
Sbjct 957 AATCTGTGCTTAAAGATCCAAGTGTTTCGAAGGATGTTCTTCGAGCTCGTGCCATAGGAC 1016
Query 827 TGAGGAAGCTCGGAAAC-ATTTTTCAGGGTTCTAAGAAACCGTATTCTAGAGAAAACAGC 885
||| ||| || |||| | || || |||||| ||||||| ||||| | |||| || ||||
Sbjct 1017 TGAAGAAACTTGGAA-CGATCTTCCAGGGTGCTAAGAAGCCGTACACGAGAGGAAGCAGC 1075
Query 886 TTGCGTCATGAAGAAGAAGAAGCCACCGTGAAACTTCACACCGGAGATTCCTCGAAG 942
||||||| | |||| | ||||||||||| | ||||||||| ||| || |||
Sbjct 1076 TTGCGTCG-G--GAAGCC-A--CCACCGTGAAAATGGACACCGGAGGTTCTTCAAAG 1126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51907363530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5