BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490687
Length=1844
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39160.2 | Symbols: | Homeodomain-like superfamily protein ... 2760 0.0
> AT4G39160.2 | Symbols: | Homeodomain-like superfamily protein
| chr4:18236355-18240478 FORWARD LENGTH=2111
Length=2111
Score = 2760 bits (1494), Expect = 0.0
Identities = 1735/1849 (94%), Gaps = 25/1849 (1%)
Strand=Plus/Plus
Query 1 CTTTGGTGAGAGGGAGAGTATTTGTGAAACAAGTCAATGGATTTAGATTTTGATGATCAA 60
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 156 CTTTGGTGAGAGGGAGAGTATTTGTGAAAGAAATCAATGGATTTAGATTTTGATGATCAA 215
Query 61 CCCTCGGATCACGCTGCACCAGCAGTTAGGGCTGGTGCAAGGTTTAAACCAAAAGGTAGA 120
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 216 CCCTCGGATCATGCTGCACCAGCAGTTAGGGCTGGTGCAAGGTTTAAACCAAAAGGCAGA 275
Query 121 CCACAATCCAAGAAGAAGCAAGTCTCTCTTTCAACATCCCAGACAACAATCTCTACC-GA 179
|||||| ||||||||||||||||||||||||| ||| |||| |||||| |||| || ||
Sbjct 276 CCACAACCCAAGAAGAAGCAAGTCTCTCTTTCCACAACCCAAACAACACTCTC-CCCTGA 334
Query 180 TGCTGCCAAGGAAAAACTCTCAACACAAAACGAAGATC-CGGTTTCC-CTAGACGGATCG 237
|| |||| ||||||||||||||||||||| ||||||| | | | || |||||||||||
Sbjct 335 TGTTGCCCAGGAAAAACTCTCAACACAAAGTGAAGATCTC-G-TCCCTCTAGACGGATCA 392
Query 238 TCGGCGATTCCCAGCAATGCTTTACCCTCTGAGACTAATATGCCGGATAGTGAAACTATT 297
|||| ||||||||||||||||||||| |||||||||||| |||||||||||| || ||||
Sbjct 393 TCGGAGATTCCCAGCAATGCTTTACCTTCTGAGACTAATGTGCCGGATAGTGGAAGTATT 452
Query 298 ATCAAATCTACTACTGGAACATTATCAGAAGAGAATGTAGATGTATTCCCAAAAGGGGTT 357
| ||||||||| | ||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 453 AACAAATCTACCATTGGAACATTATCAGAAGAGAATGAAGATGCATTCCCAAGAGGGGTT 512
Query 358 CATTGGTCTACGAGACCATCTATTCTGCGTGCTTGTAATAACGTTG-ATTTGGTGGGAAA 416
||||||||| || |||||||||||| |||||||||||||||| || |||||||||||||
Sbjct 513 CATTGGTCTGTGAAACCATCTATTCTTCGTGCTTGTAATAACG-TGAATTTGGTGGGAAA 571
Query 417 AAGATGTGGTGATGGCATAGAGGCGGCGTCTTCATTTCCTGATGATCCCAGAACACAAGA 476
||| ||| |||||||||||||||| || ||||||||||||||||||| |||||||||||
Sbjct 572 TAGACGTGATGATGGCATAGAGGCGACGACTTCATTTCCTGATGATCCTAGAACACAAGA 631
Query 477 TTCTACAATATTTGGAGATTATGTGACTCCTGAAACCTGGGAAGACGAAGGTCATGTGGA 536
|||| ||||||||||||||||||| |||||||||||| ||| |||||| |||| ||||||
Sbjct 632 TTCTGCAATATTTGGAGATTATGTTACTCCTGAAACCGGGGCAGACGAGGGTCGTGTGGA 691
Query 537 CATGGAAACTCTTGATATTATACAGGAGGAAGGCACCACCAGTTCATATGTGCAACATAC 596
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 692 CATGGAAACTCTTGATATTGTACAGGAGGAAGGCACCACCAGTTCATATGTGCAACATAC 751
Query 597 TGGAAAGTTGCAACCAAAACCTAGAATACTCGATACTGTGGTTGAAGAATCTGAGCCTCA 656
||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||
Sbjct 752 TGGAAAGTTGCAACCAAAACCTAGATTACTCGAGACTGTGGTTGAAGAACCTGAGCCTCA 811
Query 657 TTACTCCGCTGGTGATACTGGTTATTTTCCAATGGGTTCGAACGAGTCTGAGTTTATGGT 716
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 812 TTACTCCGCTGGTGATACTGGTTATTTTCCAATGGGTACGAACGAGTCTGAGTTTATGGC 871
Query 717 CAATGTGGAATCAAGAAACGGTTTCAGTACTTATGGAGATAC-TCAAGAAGAAGAACATA 775
||||||||||||||||||||||||||||||||||| |||| | |||||||||||||| ||
Sbjct 872 CAATGTGGAATCAAGAAACGGTTTCAGTACTTATGAAGAT-CTTCAAGAAGAAGAACTTA 930
Query 776 ATATTCCTGAAGCCCCCAGAGAAATGGTTCATGAGATGGAGGCGCGAAATGCTTCTGGCG 835
|||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||
Sbjct 931 ATATTCCTGAAGCCCCCAGAGAAACGGTTGGTGAGATGGAGGCGCAAAATGCTTCTGGCG 990
Query 836 GATGGGAACACGAAGAACAGGGTGTATCGCCTTGTGCA--AACAATACAGTTACTGGAGA 893
|||||||||| |||||||||||||||||||| | |||| |||||||||||||| |||||
Sbjct 991 GATGGGAACAAGAAGAACAGGGTGTATCGCC-T-TGCATTAACAATACAGTTACAGGAGA 1048
Query 894 AGAAGAAAATTGTTTGGGGAAAACAGTAGAAGAACAGTCTGGAAA-AGAAAGCAAAACTG 952
||||||||||||| ||||||| |||||||||||||||||| ||| ||||||||||||||
Sbjct 1049 AGAAGAAAATTGTATGGGGAATACAGTAGAAGAACAGTCT-AAAAGAGAAAGCAAAACTG 1107
Query 953 GAAAATCGAAGAGAGCTACTTCTCGAAAGCGGAAAAAGACAAGTGAAGAACCAAATAAGT 1012
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 GAAAATCGAAGCGAGCTACTTCTCGAAAGCGGAAAAAGACAAGTGAAGAACCAAATAAGT 1167
Query 1013 CTAGCGAAAAAACAGAGAAGAAGAAGTTCAAGCATTCAAGTCGTCGACAAAAAAGAACAC 1072
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 CTAGCGAAAAAACAGAGCAGAAGAAGTTCAAGCATTCAAGTCGTCGACAAAAAAGAACAC 1227
Query 1073 TGGAGAAGGAATTGCTTGAAACCCCGGATAATGAAATCAGATCTCTGCCTCTTAGAGATA 1132
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1228 TGGAGAAGGAATTGCTTGAAACCCCGGATCATGAAATCAGATCTCTGCCTCTTAGAGATA 1287
Query 1133 TGCTTCGCCTTGTCGAATATAAAGAATGGATGGAGAAAAAGGAAGCAAAGGGAGCTGGTG 1192
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1288 TGCTTCGCCTTGTCGAATATAAAGAATGGATGCAGAAAAAGGAAGCAAAGGGAGCTGGTG 1347
Query 1193 TGCAACCTAGCCAAGAAAG---TAATATGAATGCATCAGAGAGCCAGTATCATTCTCAAG 1249
||||||||||||||||||| ||||||||| | ||||| ||||||||||||||||||||
Sbjct 1348 TGCAACCTAGCCAAGAAAGTAATAATATGAACGGATCAGGGAGCCAGTATCATTCTCAAG 1407
Query 1250 GTTTTGACGACGAAGATGAATTTGGTGAATTTGGTATAGAGTCGAGCGAAAATCAAGAAC 1309
|||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1408 GTTTTGACGAAGAAGATGAATTTGGTGACTTTGGTATAGAGTCGAGCGAATATCAAGAAA 1467
Query 1310 ATTATGTAGTTAAACCGGATTCACCGGTTAACTATCAAACCTACATGAACAAGACTTCAA 1369
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1468 ATAATGTAGTTAAACCGGATTCACCGGTTAACTATCAAACCTACATGAACAAGACTTCAA 1527
Query 1370 GAACTAGATGGTCAAAGCAAGATACAGAACTCTTCTATGAGGGAATTCAAGAGTTTGGGA 1429
||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1528 GAACTCGATGGTCAAAGGAAGATACAGAACTCTTCTATGAGGGTATTCAAGAGTTTGGGA 1587
Query 1430 GCAATCTATCGATGATACAACAGCTGTTCCCTAATAGAACGCGTGAACAGATGAAGCTCA 1489
||||||| |||||||||||||||||||| ||| | |||||||||||||||||||||||||
Sbjct 1588 GCAATCTCTCGATGATACAACAGCTGTTTCCTGAGAGAACGCGTGAACAGATGAAGCTCA 1647
Query 1490 AATTCAAATTGGAGGAACGCCGAAATCCATTGAAGCTTAATGATGCATTATCAAGTCGCT 1549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1648 AATTCAAATTGGAGGAACGCCGAAATCCATTGAAGCTTAATGATGCATTATCAAGTCGCT 1707
Query 1550 CAAAACATTTTACTCATTTCAAGAACGTGATTAAGAAGCTTCAACAAGAAGCCGCGGCTG 1609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1708 CAAAACATTTTACTCATTTCAAGAACGTGATTAAGAAGCTTCAACAAGAAGCCGCGGCTG 1767
Query 1610 CAAAAGAAG-CT--GAAGAAGAAGAAGCTGGAACAGAGGCAGAGACACCTGATGTTCCCG 1666
||||||||| | |||||||||||||||||| |||| ||||||||| ||||||||||||
Sbjct 1768 CAAAAGAAGGCGAAGAAGAAGAAGAAGCTGGAGCAGAAGCAGAGACAACTGATGTTCCCG 1827
Query 1667 AGAATGAGGAGCCGGAGAAGTCTGAGGAGACGGAGCGAGCCAGTGATGGAGGAGCAGCTG 1726
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1828 AGAATGAGGAGCCTGAGAAGTCTGAGGAGACGGAGCGAGCCAGTGATGGAGTAGCAGCTG 1887
Query 1727 GAGTTAAAGAATCGGACGGTGGGGATATTGAGAATGGCGTGAGATCGGACGGTGGAGATG 1786
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1888 GAGTTAAGGAATCGGACGGTGGGGATGTTGAGAATGGCGTGAGATCGGACGGTGGAGATG 1947
Query 1787 AATGTGAGGATGATGAAGATGATTTTTGGAATTCTTATAAGAGTGACAT 1835
|||| || |||||||||||| |||| ||||||||||||||||||||||
Sbjct 1948 AATGCGACGATGATGAAGAT--TTTT-GGAATTCTTATAAGAGTGACAT 1993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91264590810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5