BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490689
Length=1178
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39190.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1345 0.0
> AT4G39190.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G21560.1);
Has 5536 Blast hits to 3562 proteins in 401 species: Archae
- 12; Bacteria - 497; Metazoa - 1363; Fungi - 374; Plants
- 149; Viruses - 22; Other Eukaryotes - 3119 (source: NCBI BLink).
| chr4:18251811-18253073 REVERSE LENGTH=1263
Length=1263
Score = 1345 bits (728), Expect = 0.0
Identities = 944/1041 (91%), Gaps = 43/1041 (4%)
Strand=Plus/Plus
Query 170 CAATGGATTCGTTTAGTACTCAGAAAACAAAATCAAGAAAGATGAAGAAGAGGCTTGCGA 229
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 207 CAATGGATTCGTTTAGTACTCAGAAACCTAAATCAAGAAAGATGAAGAAGAGGCTTGCGA 266
Query 230 AAAAGTCCCGAATTGAGATAATCTTGGATCTGTTTTTCCGGGCGATCGAGATAGTTGTGG 289
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 AAAAGTCTCGAGTTGAGATAATCTTGGATCTGTTTTTCCGGGCGATCGAGATAGTTGTGG 326
Query 290 TTTTGGTTACAGTAGCTAAGCTCTCTTATGAGCTCGTTGTCACGTTTGAGGATTCTAGTG 349
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 TTTTGGTTACATTAGCTAAGCTCTCTTATGAGCTCGTTGTCACGTTTGAGGATTCTAGTG 386
Query 350 TCGCATCGGTTATTCTCGCAAACCGTAGCCTTGCGTTTGTTGTAGGAAACGCGATAGTCA 409
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 387 TCGCATCGGTTATTCTCGCAAACCGTAGTCTTGCGTTTGTCATAGGAAACGCGATAGTCA 446
Query 410 TCGCTCTGATCGCTAAATCGGGTCTTCTCTTGAATCAAGAACTTGATCCCAAGTTCAAAA 469
||||||||||||||||||| ||| |||||||||||||||||| ||||||||||| |||||
Sbjct 447 TCGCTCTGATCGCTAAATCCGGTATTCTCTTGAATCAAGAACATGATCCCAAGTGCAAAA 506
Query 470 GAAACGATCTTTACGAGGAGTTTGTTCTGGAGAGCTCAAGGAGAGATGGAGTTTCACAAG 529
| ||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||
Sbjct 507 GCAACGATCTTTACGAGGATTTTGTTCTGGAGAGCTCAAGGAGAGGTGGATTTTCACAAG 566
Query 530 CTGAGATGAGAAGCAGAGAAAAACAGAGTGAAGCAGAGAACGAGGCTAAACAGAGCATAA 589
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 ATGAGATGAGAAGCGGAGAAAAACAGAGTGAAGCAGAGAACGAGGCTAAACAGAGCATAA 626
Query 590 CCGAGAACAAAGCAAAAGAGAACGAAGAGAAACAAAGCATAACTGAGAGCAGAGTAAAAC 649
|||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 627 CCGAGAACAAAGCAAAAGAGAACGAAGAGAAACAGAGCATCACCGAGAGCAGAGTAAAAA 686
Query 650 AAAGCGTAACAGAGAAGAAGACGAAACAGAGCAAACCTGAGAAGAAAGT--------G-A 700
||||||||||||||||||||||||||| || || ||||||||||||| | |
Sbjct 687 AAAGCGTAACAGAGAAGAAGACGAAACGGATCATTTCTGAGAAGAAAGTGAAACAGAGCA 746
Query 701 AA-C--AG-A---G-CAAACCTGAG-A--GGT-TG-AC----A-AAACAGAGCGTAGTTG 742
|| | || | | |||| | ||| | | || || | |||||||||| |||||
Sbjct 747 AACCTGAGAAGTTGACAAAACAGAGCACTTCTGTGAACAGAGAGAAACAGAGCGAAGTTG 806
Query 743 AGCATAAGGACGTAACTGTGGA-GATGGAGAAACAGAATTTGACAGAGAAGAGGCAAATT 801
||||||||||| ||||| | || ||| ||||||||||| |||||||||||||||||||||
Sbjct 807 AGCATAAGGACATAACTAT-GACGATAGAGAAACAGAACTTGACAGAGAAGAGGCAAATT 865
Query 802 CAGAGTTACCAACGAAGTC-AGTCGGAGAATCTGAAGGTTTTGGAGAAGAGTTATTGTGG 860
||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||
Sbjct 866 CAGAGTTACCAACGAAG-CAAGTCGGAGAATCTGAAGGTTTTGGAGAAGAGTTCTTGTGG 924
Query 861 AAGATTGAAGAGATCAGAGACAGATGCATCTTCTGAAAGATTTGATTCCGATGATGAACT 920
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 925 AAGATTGAAGAGATCAGAGACAGATGCATCTGCTGAGAGATTTGATTCCGATGATGAACT 984
Query 921 CCGATACAAGATCGAGTCTTTCATTGCAAGGCAGAGAAGGAATCAAACTGATGAATAGGT 980
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 985 TCGATACAAGATCGAGTCTTTCATTGCAAGACAGAGAAGAAATCAAACTGATGAATAGGT 1044
Query 981 TTGAATAATTTAGATaaaatacaaaaaataagcaaaaaaaaattaaaaaGACAGTAGTTT 1040
||| ||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1045 TTGTATAATTTAGATGAAATACAAAGAATAAGCAAAAAAAAATGAAAAAGACAGTAGTTT 1104
Query 1041 ATGCAAATAGCATTCACGTATATATTAAAGTGTTTGTTATA--AAAGGGTAAAACTTGTT 1098
||||||||||||||||||||||||||||||||||||||||| ||| || ||| ||
Sbjct 1105 ATGCAAATAGCATTCACGTATATATTAAAGTGTTTGTTATACTAAAAGG-----CTTCTT 1159
Query 1099 TTAAAGCC-CTCGAAATTTGGCATAAATATTTGTTTAGCtttttttttttatttttttat 1157
|||||||| || ||||| ||||||||||||||| |||| | |||||||| |||| ||
Sbjct 1160 TTAAAGCCTCTGGAAATCTGGCATAAATATTTGCTTAGATATTTTTTTTG-TTTT---AT 1215
Query 1158 ttctttgtataatttttGATA 1178
|||||||||||||||||||||
Sbjct 1216 TTCTTTGTATAATTTTTGATA 1236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57831027840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5