BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490690
Length=576
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39200.1 | Symbols: | Ribosomal protein S25 family protein ... 717 0.0
AT2G21580.1 | Symbols: | Ribosomal protein S25 family protein ... 483 1e-135
AT2G16360.1 | Symbols: | Ribosomal protein S25 family protein ... 219 3e-56
AT3G30740.1 | Symbols: | 40S ribosomal protein S25 (RPS25C), p... 209 2e-53
> AT4G39200.1 | Symbols: | Ribosomal protein S25 family protein
| chr4:18257336-18258680 FORWARD LENGTH=671
Length=671
Score = 717 bits (388), Expect = 0.0
Identities = 553/623 (89%), Gaps = 49/623 (8%)
Strand=Plus/Plus
Query 1 ATAGATATTAACCTCAGACTTAGGGAAACCCTAATATAAGAGCAAACCCT---A--G--- 52
||||||||| |||||| ||||||||||||||||||||||||||||||||| | |
Sbjct 1 ATAGATATTGACCTCAAACTTAGGGAAACCCTAATATAAGAGCAAACCCTAGCAGCGCTA 60
Query 53 ---CCCTCA---TC-T-TTTCATCCACT--T-CTCGCCGTTCGCTCTACCGTCACCGTCG 101
|||||| || | ||||| ||||| | |||||||||||| | || || ||||||
Sbjct 61 TCTCCCTCAGCCTCATCTTTCACCCACTACTATTCGCCGTTCGCTTTTCCCTCGCCGTCG 120
Query 102 AAGTCAACATGGCGCCGAAGAAGGATAAGGTTCCGCCACCATCATCAAAGCCGGCGAAAT 161
|| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 121 AAATCAACATGGCGCCGAAGAAGGATAAGGTTCCGCCACCGTCATCGAAGCCGGCGAAAT 180
Query 162 CCGGAGGTGGAAAGC---AGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGA 218
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCGGAGGTGGAAAGCAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGA 240
Query 219 ACAACATGGTGTTGTTTGATCAAGCTACTTATGACAAGCTTCTCACTGAAGCTCCCAAAT 278
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 ACAACATGGTGCTGTTTGATCAAGCTACTTATGACAAGCTTCTCACTGAAGCTCCCAAGT 300
Query 279 TCAAGCTCATCACCCCTTCCATTCTCTCTGACCGTATGAGGATTAATGGGTCGCTAGCAA 338
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 301 TCAAGCTCATCACCCCTTCCATTCTCTCTGACCGTATGAGGATCAATGGGTCGCTAGCAA 360
Query 339 GGAGGGCGATTAGGGAGCTAATGGCCAAAGGTGTGATCAGGATGGTCGCTGCTCACTCGA 398
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGAGAGCGATTAGGGAGCTAATGGCCAAAGGTGTGATCAGGATGGTCGCTGCTCACTCGA 420
Query 399 GCCAGCAGATCTACACTCGTGCCACCAACACCTAAGATGTTTTGGTT-CTTTATCC---- 453
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 421 GCCAGCAGATCTACACTCGTGCCACCAACACCTAAGATGTTT-GGTTTCTTTATCCACCT 479
Query 454 --G--------C--CTTTA-C----CTCTTGCTGTTTGATTCTTGAGGAACTCGTTAGAA 496
| | |||| | |||||| |||||||||||| ||||||| |||||||
Sbjct 480 AAGATGTTTGGCTTCTTTTTCTTATCTCTTGTTGTTTGATTCTTCAGGAACTTGTTAGAA 539
Query 497 TCTTT-GTTTCGTATTCCGTTTTTT-GAGATATATGGCTATTTAAAACGCATCAAGACTT 554
||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 540 TCTTTTGTTTCGTATTCCGTTTTTTTGAGATATATGGTTATTTAAAACGCATCAAGACTT 599
Query 555 CTAAAATTCAGTCCAA-CCTTTG 576
|||||||| |||| || ||||||
Sbjct 600 CTAAAATTGAGTC-AATCCTTTG 621
> AT2G21580.1 | Symbols: | Ribosomal protein S25 family protein
| chr2:9236523-9237746 FORWARD LENGTH=669
Length=669
Score = 483 bits (261), Expect = 1e-135
Identities = 316/342 (92%), Gaps = 5/342 (1%)
Strand=Plus/Plus
Query 96 CCGTCGAAGTCAACATGGCGCCGAAGAAGGATAAGGTTCCGCCACCATCATCAAAGCCGG 155
|||||||| ||| ||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 93 CCGTCGAAATCACCATGGCGCCAAAGAAGGATAAGGTTCCACCACCGTCATCAAAGCCGG 152
Query 156 CGAAATCCGGAGGTGG--AA-AGCAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGA 212
| ||||| |||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 153 CCAAATCTGGAGGTGGAAAACAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGA 212
Query 213 AGGTGAACAACATGGTGTTGTTTGATCAAG-CTACTTATGACAAGCTTCTCACTGAAGCT 271
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 213 AGGTGAACAACATGGTGTTGTTTGATCAAGGC-ACTTATGACAAGCTTCTCACTGAAGCT 271
Query 272 CCCAAATTCAAGCTCATCACCCCTTCCATTCTCTCTGACCGTATGAGGATTAATGGGTCG 331
||||| |||||||||||||| || || || ||||| |||||||||||||||||||||||
Sbjct 272 CCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGATTAATGGGTCT 331
Query 332 CTAGCAAGGAGGGCGATTAGGGAGCTAATGGCCAAAGGTGTGATCAGGATGGTCGCTGCT 391
|| || |||||||||||||||||||||||||| |||||| |||||||||||||| ||||
Sbjct 332 CTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGTTTGATCAGGATGGTCTCTGCA 391
Query 392 CACTCGAGCCAGCAGATCTACACTCGTGCCACCAACACCTAA 433
||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 CACTCGAGCCAGCAGATCTACACTCGTGCCACCAACACCTAA 433
> AT2G16360.1 | Symbols: | Ribosomal protein S25 family protein
| chr2:7076713-7077366 REVERSE LENGTH=378
Length=378
Score = 219 bits (118), Expect = 3e-56
Identities = 246/307 (80%), Gaps = 11/307 (4%)
Strand=Plus/Plus
Query 112 GGCGCCGAAGAAGGATAAGGTTCCGCCACCATCATC-AAAGCCGGCGAAATCCGGAGGTG 170
||| || |||||||| || || || |||||||| || ||| || || |||||||| || |
Sbjct 59 GGCACCAAAGAAGGACAAAGTCCCACCACCATCCTCTAAA-CCCGCCAAATCCGGTGGCG 117
Query 171 GAAAGCAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTGT 230
|||||||| | || || | ||||| |||||||||||||||||||||||||||||||| |
Sbjct 118 GAAAGCAG-A-AA-AA--GAAGCAAAGGAAAGCAAAAGGAGAAGGTGAACAACATGGT-T 171
Query 231 -TGTTTGATCAAGCTACTTATGACAAGCTTCTCACTGAAGCTCCCAAATTCAAGCTCATC 289
|||| |||||||| ||||| ||||||||| | |||||||||| || ||||| | |||
Sbjct 172 CTGTTCGATCAAGCAACTTACGACAAGCTTATGTCTGAAGCTCCTAAGTTCAAATTGATC 231
Query 290 ACCCCTTCCATTCTCTCTGACCGTATGAGGATTAATGGGTCGCTAGCAAGGAGGGCGATT 349
|| ||||| ||||||||||||||| | |||| ||||||||||| || || | ||||||
Sbjct 232 ACTCCTTCGATTCTCTCTGACCGTCTTCGGATCAATGGGTCGCTTGCTAGAAAGGCGATA 291
Query 350 AGGGAGCTAATGGCCAAAGGTGTGATCAGGATGGTCGCTGCTCACTCGAGCCAGCAGATC 409
|| || | |||| ||||| ||| |||||||| || ||||||| || ||||||||
Sbjct 292 AGAGATTTGATGGTGAAAGGCACGATAAGGATGGTTTCTACTCACTCAAGTCAGCAGAT- 350
Query 410 TA-CACT 415
|| ||||
Sbjct 351 TAACACT 357
> AT3G30740.1 | Symbols: | 40S ribosomal protein S25 (RPS25C),
pseudogene, similar to GB:P46301 GI:1173234 40S RIBOSOMAL PROTEIN
S25 from (Lycopersicon esculentum); blastp match of 75%
identity and 7.2e-09 P-value to SP|P46301|RS25_LYCES 40S
ribosomal protein S25. (Tomato) {Lycopersicon esculentum} |
chr3:12367902-12368118 FORWARD LENGTH=217
Length=217
Score = 209 bits (113), Expect = 2e-53
Identities = 130/138 (94%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 183 AGAAGTGGAGCAAGGGAAA-GCAAAAGGAGAAGGTGAACAACATGGTGTTGTTTGATCAA 241
||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||
Sbjct 15 AGAAGTGGAGCAAGGGAAAGGC-AAAGGAGAAGCTGAACAACATGGTGTTGTTTGATCAA 73
Query 242 GCTACTTATGACAAGCTTCTCACTGAAGCTCCCAAATTCAAGCTCATCACCCCTTCCATT 301
||||||||||| |||||||||| |||||||||||| || |||||||| ||||||||||||
Sbjct 74 GCTACTTATGAGAAGCTTCTCATTGAAGCTCCCAAGTTTAAGCTCATTACCCCTTCCATT 133
Query 302 CTCTCTGACCGTATGAGG 319
||||||||||||||||||
Sbjct 134 CTCTCTGACCGTATGAGG 151
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27679014997
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5