BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490693
Length=1896
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39210.1 | Symbols: APL3 | Glucose-1-phosphate adenylyltrans... 2861 0.0
AT2G21590.1 | Symbols: APL4 | Glucose-1-phosphate adenylyltrans... 1581 0.0
> AT4G39210.1 | Symbols: APL3 | Glucose-1-phosphate adenylyltransferase
family protein | chr4:18259609-18263417 FORWARD LENGTH=1959
Length=1959
Score = 2861 bits (1549), Expect = 0.0
Identities = 1733/1819 (95%), Gaps = 24/1819 (1%)
Strand=Plus/Plus
Query 46 TTCTTCTCTTGGTTTTCCTTGGATTTCAAACGACAATAACCAAAACCAGAGAACT--GTC 103
||||| ||||||| |||| | |||||||||||||| ||||||||||||||||||| |
Sbjct 81 TTCTTGTCTTGGTCTTCCCTCGATTTCAAACGACATTAACCAAAACCAGAGAACTACGAA 140
Query 104 TCATTCCAGCTaaaaaaaGATGGATTCTTTTTGCAACTTTAGCTTGGGGACAAACACTGT 163
| ||| | ||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 141 TTATT-C-GCTAAAAAAAGATGGATTCTTGTTGCAACTTTAGCTTGGGGACAAAAACTGT 198
Query 164 CTTGTCCAAAGACAGTTTCAAGAATGTAGAGAACAAATTTTTGGGTGAGAAGATCAAAGG 223
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 CTTGGCCAAAGACAGTTTCAAGAATGTAGAGAACAAATTTTTGGGTGAGAAGATCAAAGG 258
Query 224 AAGCGTCTTGAAACCTTTTTCTTCAGATTTAAGTTCCAAGAAGTTCAGAAATCGAAAATT 283
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 259 AAGCGTCTTGAAGCCTTTTTCTTCAGATTTGAGTTCCAAGAAGTTCAGAAATCGAAAATT 318
Query 284 GAGGTCCGGTGTTGCTTACGCCATTGCTACTTCAAAGAATGCTAAAGAGGCTTTGAAAAA 343
|||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 319 GAGGCCCGGTGTTGCTTACGCTATTGCTACCTCAAAGAATGCTAAAGAGGCTTTGAAAAA 378
Query 344 TCAACCTTTAATGTTCGAGAGAAAAAGAGCAGATCCGAAGAATGTGGCTGCAATCATTCT 403
|||||||| ||||| ||||||| |||||||||||| || ||||||||||||||||||||
Sbjct 379 TCAACCTTCCATGTTTGAGAGAAGAAGAGCAGATCCTAAAAATGTGGCTGCAATCATTCT 438
Query 404 AGGAGGAGGCGATGGAGCTAAACTCTTTCCTCTTACAAAGCGAGCAGCAACACCGGCTGT 463
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 439 AGGAGGAGGCGATGGAGCTAAACTCTTTCCTCTTACCAAGCGAGCAGCAACACCTGCTGT 498
Query 464 TCCTGTGGGTGGATGCTATAGGATGATCGATATCCCGATGAGTAATTGCATTAACAGTTG 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 TCCTGTGGGTGGATGCTATAGGATGATCGATATCCCGATGAGTAATTGCATTAACAGTTG 558
Query 524 CATAAACAAGATTTTCGTGCTGACTCAGTTTAACTCGGCTTCCCTCAATCGCCATTTGGC 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 CATAAACAAGATTTTCGTGCTGACTCAGTTTAACTCGGCTTCCCTCAATCGCCATTTGGC 618
Query 584 TCGTACTTATTTTGGGAATGGCATAAACTTTGGAGATGGTTTTGTTGAGGTTCTGGCTGC 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 TCGTACTTATTTTGGGAATGGCATAAACTTTGGAGATGGTTTTGTTGAGGTTCTGGCTGC 678
Query 644 TACACAAACTCCTGGTGAAGCCGGGAAAAAGTGGTTTCAAGGAACAGCAGATGCTGTGAG 703
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 679 TACACAAACTCCTGGTGAAGCCGGGAAAAAGTGGTTTCAAGGCACAGCTGATGCTGTGAG 738
Query 704 AAAATTTCTCTGGGTGTTTGAGGATGCTAAGAACAGGAACATTGAGAATATACTCATCTT 763
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 739 AAAATTTCTGTGGGTGTTTGAGGATGCTAAGAACAGGAACATTGAGAATATAATCATCTT 798
Query 764 GTCTGGAGATCACCTATATAGAATGAACTATATGGACTTTGTTCAGTACCATGTCGATAG 823
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 799 GTCTGGAGATCACCTATATAGAATGAACTATATGGACTTTGTTCAGCACCATGTCGATAG 858
Query 824 TAAAGCGGATATTACTCTTTCGTGCGCGCCAGTTGATGAGAGCCGTGCATCAGATTATGG 883
|||||| ||||||||||||||||||||||| ||||||||||||||||| || || |||||
Sbjct 859 TAAAGCCGATATTACTCTTTCGTGCGCGCCGGTTGATGAGAGCCGTGCGTCGGAGTATGG 918
Query 884 ACTGGTCAATATTGATCGAAGCGGGCGTGTAGTCCATTTCTCTGAGAAACCAACTGGCAT 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 ACTGGTCAATATTGATCGAAGCGGGCGTGTAGTCCATTTCTCTGAGAAACCAACTGGCAT 978
Query 944 CGATCTGAAATCAATGCAAACCGATACTACTATGCATGGACTGTCTCATCAAGAAGCAGC 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 CGATCTGAAATCAATGCAAACCGATACTACTATGCATGGACTGTCTCATCAAGAAGCAGC 1038
Query 1004 AAAATCTCCATACATTGCGTCAATGGGAGTTTATTGCTTCAAAACCGAAGCTTTACTGAA 1063
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1039 AAAATCTCCATACATTGCGTCAATGGGAGTTTATTGTTTCAAAACCGAAGCTTTACTGAA 1098
Query 1064 GCTTCTGACATGGCGGTATCCGAGTTCCAATGACTTTGGATCTGAAATTATTCCTGCAGC 1123
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1099 GCTTCTGACATGGCGGTATCCGAGTTCCAATGACTTTGGGTCTGAAATTATTCCTGCAGC 1158
Query 1124 TATAAGAGATCACAATGTTCAAGGATACATCTACAGAGACTATTGGGAAGATATCGGAAC 1183
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1159 TATAAAAGATCACAATGTTCAAGGATACATCTACAGAGACTATTGGGAAGACATCGGAAC 1218
Query 1184 TATAAAGAGTTTCTATGAAGCTAATCTTGCCCTTGTCGAGGAGCATCCCAAGTTTGAGTT 1243
||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1219 TATTAAGAGTTTCTATGAAGCTAATATTGCTCTTGTCGAGGAGCATCCCAAGTTTGAGTT 1278
Query 1244 TTACGATCAGAATACGCCTTTCTACACTTCTCCTCGGTTTTTACCACCCACCAAAACCGA 1303
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1279 TTACGATCAGAATACACCTTTCTACACTTCTCCTCGGTTTCTACCACCCACCAAAACCGA 1338
Query 1304 GAAATGCCGGATTGTAAATTCGATAATCTCACACGGATGTTTCTTGGGGGAATGCAGCGT 1363
||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
Sbjct 1339 GAAGTGCCGGATTGTAAATTCGGTAATCTCACACGGATGTTTCTTGGGAGAATGCAGCAT 1398
Query 1364 CCAACGTTCCATCATTGGTGAAAGGTCACGTCTTGACTATGGTGTTGAGCTTCAGGATAC 1423
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1399 CCAACGTTCCATTATTGGTGAAAGATCACGTCTTGACTATGGTGTTGAGCTTCAGGATAC 1458
Query 1424 TCTTATGTTAGGAGCGGATAGTTACCAAACCGAATCTGAGATCGCGTCTCTGCTCGCGGA 1483
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1459 TCTTATGTTAGGAGCGGATAGTTACCAAACCGAATCTGAGATCGCGTCTCTGCTTGCGGA 1518
Query 1484 AGGAAATGTTCCAATTGGCATTGGCCGAGATACAAAGATCAGGAAATGCATCATTGACAA 1543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1519 AGGAAATGTTCCAATTGGCATTGGCCGAGATACAAAGATCAGGAAATGCATCATTGACAA 1578
Query 1544 GAATGCAAAGATCGGGAAAAACGTGATGATCTTGAACAAAGATGATGTTAAGGAAGCTGA 1603
||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||
Sbjct 1579 GAATGCAAAGATCGGGAAAAACGTGGTGATCATGAACAAAGATGATGTTAAGGAGGCTGA 1638
Query 1604 TAGACCAGAGGAAGGATTCTACATTCGATCTGGAATCACTGTGGTTGTCGAAAAGGCCAC 1663
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1639 TAGGCCAGAGGAAGGATTCTACATTCGATCTGGAATCACTGTGGTTGTCGAAAAGGCCAC 1698
Query 1664 CATTAAAGACGGTACTGTGATATGAACAAAACGATCTCAAGACCGCCGTG-TAAGTTTGA 1722
|||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 1699 CATTAAAGACGGTACTGTGATATGAACAAAACGATCTCAAGACCGCCGTGGTGATTTTGA 1758
Query 1723 GGTGTTTTGGCCTGAAGTGaaaaaaaaGAGACAGTTGTGATTTTGTCATGTAAATTAGAA 1782
||||||| |||| ||||| ||||| | ||||| |||||||||||||||||||||||||||
Sbjct 1759 GGTGTTT-GGCCGGAAGTTAAAAAGA-GAGACCGTTGTGATTTTGTCATGTAAATTAGAA 1816
Query 1783 GAGTTTGAAGAGATAGAAGAATCATACAACTTAGA-G----------TTTAAGCTTTACA 1831
||| || || |||||||||||||||| ||||| | |||||||||||||
Sbjct 1817 GAG---GA-GA--TAGAAGAATCATACAATTTAGAAGCAAAAGCAAGTTTAAGCTTTACA 1870
Query 1832 ATAAGAGTGATAAGCCGAT 1850
||||||||||| |||||||
Sbjct 1871 ATAAGAGTGATCAGCCGAT 1889
> AT2G21590.1 | Symbols: APL4 | Glucose-1-phosphate adenylyltransferase
family protein | chr2:9238482-9242440 FORWARD LENGTH=2034
Length=2034
Score = 1581 bits (856), Expect = 0.0
Identities = 1360/1600 (85%), Gaps = 48/1600 (3%)
Strand=Plus/Plus
Query 117 aaaaaGATGGATTCTTTTTGCAACTTTAG-CTTGGGGACAA--A-CACTGTCTTGTCC-A 171
|||||||||||||||| || | |||| | ||||||||||| | || | ||| || |
Sbjct 167 AAAAAGATGGATTCTTCTTACTCCTTT-GCCTTGGGGACAAGTAGTTCTATTTTG-CCAA 224
Query 172 AAGACAGTTTCAAGAATGTAGAGAACAAATTTT-TGGGTGAGAAGATCAA-AGGAA-GCG 228
|| |||||||| |||||||||||||| ||||| | |||||||||| ||| | || | |
Sbjct 225 AACTCAGTTTCAGGAATGTAGAGAACAGATTTTAT-GGTGAGAAGAACAACAACAATG-G 282
Query 229 TCT-TG-AAACCTTTTTCTTCAGATTTAAGTTCCAAGAAGTTCAGAAATCGAAAA-TTGA 285
| | || |||| |||| |||||||| | ||||||||||| || |||| |||| || |
Sbjct 283 TTTGTGTAAACGTTTTGGATCAGATTTGGGCTCCAAGAAGTTTAGGAATC-AAAAGTTCA 341
Query 286 GGTC-CGGTGTTGCTTACGCCATTGCTACTTCAAAGAATGCTAAAGAGGCTTTGAAAAAT 344
| | |||||||| |||||| |||| |||||| | ||| | ||| ||||| || | | |
Sbjct 342 AG-CACGGTGTTGTTTACGCTGTTGCCACTTCAGATAATCCAAAAAAGGCTATG-ACAGT 399
Query 345 CAA-CCTTTAATGTTCGAGAGAA-AAAGAGCAGATCCG-AAGAATGTGGCTGCAATCATT 401
|| ||| ||||| ||||||| |||| | ||| ||| || ||||||||||||||||||
Sbjct 400 AAAGACTTCCATGTTTGAGAGAAGAAAG-GTAGACCCGCAA-AATGTGGCTGCAATCATT 457
Query 402 CTAGGAGGAGGCGATGGAGCTAAACTCTTTCCTCTTACAAAGCGAGCAGCAACACCGGCT 461
|||||||||||| |||||||||||||||| |||||||||| | |||| |||||||| |||
Sbjct 458 CTAGGAGGAGGCAATGGAGCTAAACTCTTCCCTCTTACAATGAGAGCCGCAACACCAGCT 517
Query 462 GTTCCTGTGGGTGGATGCTATAGGATGATCGATATCCCGATGAGTAATTGCATTAACAGT 521
|||||||| ||||||||||| ||| |||||||||||||||||||||| || ||||||||
Sbjct 518 GTTCCTGTTGGTGGATGCTACAGGCTGATCGATATCCCGATGAGTAACTGTATTAACAGC 577
Query 522 TGCATAAACAAGAT-TTTCGTGCTGACTCAGTTTAACTCGGCTTCCCTCAATCGCCATTT 580
||||| |||||||| ||| |||||||| ||||| ||||| |||||||| ||||| |||||
Sbjct 578 TGCATCAACAAGATATTT-GTGCTGACACAGTTCAACTCAGCTTCCCTTAATCGACATTT 636
Query 581 GGCTCGTACTTATTTTGGGAATGGCATAAACTTTGGAGATGGTTTTGTTGAGGTTCTGGC 640
|| || ||||||||||||||||||||||||||||||| |||||| || |||||||| ||
Sbjct 637 AGCACGAACTTATTTTGGGAATGGCATAAACTTTGGAGGTGGTTTCGTAGAGGTTCTTGC 696
Query 641 TGCTACACAAACTCCTGGTGAAGCCGGGAAAAAGTGGTTTCAAGGAACAGCAGATGCTGT 700
|||||||||||| || || ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 697 TGCTACACAAACACCAGGGGAAGCTGGGAAGAAGTGGTTTCAAGGAACAGCAGATGCTGT 756
Query 701 GAGAAAATTTCTCTGGGTGTTTGAGGATGCTAAGAACAGGAACATTGAGAATATACTCAT 760
|||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 757 CAGAAAATTCCTCTGGGTGTTTGAGGATGCCAAGAACAGGAACATTGAGAACATACTTAT 816
Query 761 CTTGTCTGGAGATCACCTATATAGAATGAACTATATGGACTTTGTTCAGTAC-CATGTCG 819
|||||||||||||| || |||||||||||||| |||||||||||||||| | ||||| |
Sbjct 817 TTTGTCTGGAGATCATCTCTATAGAATGAACTACATGGACTTTGTTCAGT-CTCATGTGG 875
Query 820 ATAGTAAAGCGGATATTACTCTTTCGTGCGCGCCAGTT-GATGAGAGCCGTGCATCAGAT 878
||||||| |||||||||||||||||||| || |||||| | ||| |||||||||||| ||
Sbjct 876 ATAGTAATGCGGATATTACTCTTTCGTGTGCACCAGTTAG-TGAAAGCCGTGCATCAAAT 934
Query 879 TATGGACTGGTCAATATTGATCGAAGCGGGCGTGTAGTCCATTTCTCTGAGAAACCAACT 938
| ||| || || || ||||||||| | ||||||||| |||||||||| |||||||||||
Sbjct 935 TTTGGTCTAGTAAAGATTGATCGAGGTGGGCGTGTAATCCATTTCTCCGAGAAACCAACA 994
Query 939 GGCA-TCGATCTGAAATCAATGCAAACCGATACTACTATGCATGGACTGTCTCATCAAGA 997
|| | |||| ||||||||||||||||| || || || |||| ||||||||||||||||||
Sbjct 995 GG-AGTCGACCTGAAATCAATGCAAACAGACACAACAATGCTTGGACTGTCTCATCAAGA 1053
Query 998 AGCAGCAAAATCTCCATACATTGCGTCAATGGGAGTTTATTGCTTCAAAACCGAAGCTTT 1057
|||| || | |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1054 AGCAACAGATTCTCCATACATTGCATCAATGGGAGTTTATTGTTTCAAAACCGAAGCTTT 1113
Query 1058 ACTGAAGCTTCTGACATGGCGGTATCCGAGTTCCAATGACTTTGGATCTGAAATTATTCC 1117
||||| ||||| ||| | | ||||||||||||||||||||||||||||||| |||||||
Sbjct 1114 GCTGAACCTTCTAACAAGACAGTATCCGAGTTCCAATGACTTTGGATCTGAAGTTATTCC 1173
Query 1118 TGCAGCTATAAGAGATCACAATGTTCAAGGATACATCTACAGAGACTATTGGGAAGATAT 1177
|||||| |||||||||||| |||||||||||||||| | |||||| || ||||| |||||
Sbjct 1174 TGCAGCCATAAGAGATCACGATGTTCAAGGATACATATTCAGAGATTACTGGGAGGATAT 1233
Query 1178 CGGAACTATAAAGAG-TTTCTATGAAGCTAATCTT-GCCCTTGTCGAGGAGC-ATCCCAA 1234
||||||||||||| ||| ||||| |||||| || || ||||| ||||||| | || ||
Sbjct 1234 TGGAACTATAAAGACATTT-TATGAGGCTAAT-TTAGCTCTTGTTGAGGAGCGA-CCAAA 1290
Query 1235 GTTTGAGTTTTACGATC-AGAATACGCCTTTCTACACTTCTCCTCGGTTTTTACCACCCA 1293
|||||| || || |||| |||| || || |||||||||||||||||||| | ||||| |
Sbjct 1291 GTTTGAATTCTATGATCCAGAA-ACTCCGTTCTACACTTCTCCTCGGTTCCTCCCACCAA 1349
Query 1294 CCAAAACC-GAGAAATGCCGGATTGTAAATTCGATAATCTCACACGGATGTTTCTTGGGG 1352
| |||| | |||||||| ||||| ||| |||| ||||||||||| ||||||||| || |
Sbjct 1350 C-AAAAGCTGAGAAATGTCGGATGGTAGATTCAATAATCTCACATGGATGTTTCCTGCGA 1408
Query 1353 GAATGCAGCGTCCAACGTTCCATCATTGGTGAAAGGTCACGTCTTGACTATGGTGTTGAG 1412
|||||||||||||||||||| |||||||||||| | |||||||| ||||| || ||||||
Sbjct 1409 GAATGCAGCGTCCAACGTTCAATCATTGGTGAACGATCACGTCTAGACTACGGGGTTGAG 1468
Query 1413 CTTCAGGATACTCTT-ATGTTAGGAGCGGAT-AGTTACCAAACCGAATCTGAGATCGCGT 1470
||||||||||| || |||||||| || ||| | | ||||||| || |||||||| || |
Sbjct 1469 CTTCAGGATACA-TTGATGTTAGGTGCAGATTACT-ACCAAACTGAGTCTGAGATTGCAT 1526
Query 1471 CTCTGCTCGCGGAAGGAAATGTTCCAATTGGCATTGGCCGAGATACAAAGATCAGGAAAT 1530
|||| | || |||||||| ||||||||||| ||||| ||| ||||| ||||||||||
Sbjct 1527 CTCTATTAGCAGAAGGAAAGGTTCCAATTGGTATTGGTAAAGACACAAAAATCAGGAAAT 1586
Query 1531 GCATCATTGACAAGAATGCAAAGATCGGGAAAAACGTGATGATCTTGAACAAAGATGATG 1590
||||||||||||||||||| |||||||| ||||||||||| ||| ||||||||| ||||
Sbjct 1587 GCATCATTGACAAGAATGCTAAGATCGGTAAAAACGTGATCATCATGAACAAAGGCGATG 1646
Query 1591 TT-AAGGAAGCTGATAGACCAGAGGAAGGATTCTACATTCGATCTGGAATCACTGTGGTT 1649
| ||| |||| ||||| |||||||||||||||||||||||||| |||||||||||| |
Sbjct 1647 TACAAG-AAGCAGATAGGCCAGAGGAAGGATTCTACATTCGATCAGGAATCACTGTGATA 1705
Query 1650 GTCGAAAAGGCCACCATTAAAGACGGTACTGTGATATGAA 1689
||||||||||| || ||| |||| |||||||| |||||||
Sbjct 1706 GTCGAAAAGGCGACAATTCAAGATGGTACTGTAATATGAA 1745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93875019150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5