BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490694
Length=829
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39220.1 | Symbols: ATRER1A | Rer1 family protein | chr4:182... 1190 0.0
> AT4G39220.1 | Symbols: ATRER1A | Rer1 family protein | chr4:18263617-18265771
FORWARD LENGTH=957
Length=957
Score = 1190 bits (644), Expect = 0.0
Identities = 765/818 (94%), Gaps = 29/818 (4%)
Strand=Plus/Plus
Query 1 aaaataaaaacaaaaataaaaCGCCGATCGAA-CCATCTTCTTCTTCTTCATTTGGTGTT 59
||||||||| |||||||||| |||||||| || ||| |||||||||||||||||| ||
Sbjct 1 AAAATAAAATCAAAAATAAATCGCCGATC-AATCCA---TCTTCTTCTTCATTTGGTATT 56
Query 60 GCGT-CTTTCGTCGCCAGATCTGCTCG-TTTTTCGCTCC-TTGTTTGGGTCACCATTACT 116
|| | ||| ||||| |||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 57 GC-TGCTTACGTCGTCAGATCTGCTCGTTTTTTCGCTCCATT-TTTGGGTCACCATTACT 114
Query 117 CAGCTTTCCGTTTTAAATATCACATTAGATGGACGAAAGCGGAGGTGATAGTGGTTCAGT 176
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 CAGC-TTCCGTTTTAAATATCACATTAGATGGACGAAAGCGGAGGTGATAGTGGTTCAGT 173
Query 177 AGCTACGCCTGTTCAACAGCGAGCACATGAGGCATGGAGGATTTACCAACACTATCTTGA 236
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 GGCCACACCTGTTCAACAGCGAGCACATGAGGCATGGAGGATTTACCAACACTATCTTGA 233
Query 237 CAAGACTACACCTCATGCAAATTACAGGTGGATCGGAACTCTTGTCGTCGCTCTTATCTA 296
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 234 CAAGACTACACCTCATGCAAATTACAGATGGATTGGAACTCTTGTCGTCGCTCTTATCTA 293
Query 297 CTGTTTGAGGGTTTACTATATTCAAGGTTTCTACATCATCGCCTATGGTCTTGGGATCTA 356
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 294 CTGTTTGAGGGTTTACTATATTCAGGGTTTCTACATCATCGCCTATGGTCTTGGAATCTA 353
Query 357 CCTTCTCAATCTGCTTATCGGGTTCTTATCCCCTCTTGTTGATCCTGAGGCTGGTGGGGT 416
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 354 CCTTCTCAATCTGCTTATCGGGTTCTTGTCCCCTCTTGTTGATCCTGAAGCTGGTGGGGT 413
Query 417 CTCGGATGGGCCTACTCTGCCTACTAGAGGTTCTGATGAGTTCAAGCCTTTTATTCGCCG 476
||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 414 CTCTGATGGGCCTTCTCTGCCTACTAGAGGTTCTGATGAGTTCAAGCCTTTCATTCGCCG 473
Query 477 TCTCCCCGAGTTCAAATTCTGGTACTCCATGACAAAGGCTTTCTGCATAGCCTTCCTCAT 536
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 474 TCTCCCCGAGTTCAAATTCTGGTACTCCATGACAAAGGCTTTCTGCATAGCTTTCCTCAT 533
Query 537 GACATTCTTCTCGGTGTTTGACGTTCCTGTGTTTTGGCCAATTCTGCTGTGCTATTGGAT 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GACATTCTTCTCGGTGTTTGACGTTCCTGTGTTTTGGCCAATTCTGCTGTGCTATTGGAT 593
Query 597 CGTTCTCTTTGTTCTCACCATGAGACGCCAGATCGCCCACATGATCAAGTACAAGTACAT 656
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 594 CGTTCTCTTTGTTCTCACCATGAGACGCCAGATCGCCCACATGATCAAGTACAAATACAT 653
Query 657 CCCTTTCAGCTTCGGCAAACAGAAATATGG---ACGGAGCAGCAGCGGCTCACGTGCGGA 713
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 654 CCCTTTCAGCTTCGGCAAACAGAAATATGGTGGACGGAGCAGCAGCGGCTCACGTGCGGA 713
Query 714 TTGATCTGACCA-TTAGC---C-A----Ct--tttttgt-t-tttGCaaaaaagaaa-aa 759
|||||||||||| || || | | || ||||| | | ||||||||| ||||| ||
Sbjct 714 TTGATCTGACCAATTTGCTGACCATTAGCTACTTTTTTTGTCTTTGCAAAAGAGAAAGAA 773
Query 760 gaaaaCTGTTAAGAATATCATTTTGGACTATTTTTACA 797
|||| |||||||||||||||||||||| |||||||||
Sbjct 774 -AAAATTGTTAAGAATATCATTTTGGACCATTTTTACA 810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40388254188
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5