BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490695
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39230.1 | Symbols: | NmrA-like negative transcriptional re... 1513 0.0
> AT4G39230.1 | Symbols: | NmrA-like negative transcriptional
regulator family protein | chr4:18265885-18267829 REVERSE LENGTH=1291
Length=1291
Score = 1513 bits (819), Expect = 0.0
Identities = 954/1017 (94%), Gaps = 18/1017 (2%)
Strand=Plus/Plus
Query 143 TCCGAGCCTAAAAATGACGAGTAAGAGCAAAATCTTGTTCATCGGAGGAACGGGTTACAT 202
|||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||| ||
Sbjct 213 TCCGAGTCTAAAAATGACGAGTAAAAGCAAAATCCTGTTCATCGGAGGAACGGGTTATAT 272
Query 203 TGGGAAATATATAGTGGAAGCGAGCGCAAGATCTGGGCACCCAACCTTAGTTCTCGTTCG 262
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 273 CGGGAAATATATAGTGGAAGCGAGCGCAAGATCTGGCCACCCAACCTTAGTTCTCGTTCG 332
Query 263 AAATTCGACGCTCACAAGCCCTTCACGATCGAT-CACCATCGAGAATTTCAAGAATCTCG 321
|||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||
Sbjct 333 AAATTCGACGCTCACAAGCCCTTCACGATC-CTCCACCATCGAGAATTTCAAGAACCTCG 391
Query 322 GCGTTCAGTTTCTCCTCGGAGATCTTGACGATCATACGAGTCTCGTGAATTCGATAAAGC 381
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 392 GCGTTCAGTTTCTCCTCGGAGACCTTGACGACCATACGAGTCTCGTGAATTCGATAAAGC 451
Query 382 AAGCAGATGTGGTCATCTCTACGGTTGGACATTCCCTCTTGGGACATCAATACAAGATCA 441
|||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 452 AAGCGGATGTGGTCATCTCTACTGTTGGGCACTCCCTCTTGGGACATCAATACAAGATCA 511
Query 442 TCTCTGCCATTAAAGAAGCCGGTAATGTTAAGAGATTCTTTCCCTCAGAGTTTGGAAATG 501
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 512 TCTCCGCCATTAAAGAAGCCGGTAATGTTAAGAGATTCTTTCCCTCCGAGTTTGGAAATG 571
Query 502 ATGTAGACCGTGTTCACGCTGTTGAACCCGCCAAGTCAGCCTATGCTACAAAGG-CAAAT 560
| |||||||||||| | |||| ||||| ||||||||||||||||||||||||| ||||
Sbjct 572 ACGTAGACCGTGTTTTCACTGTCGAACCGGCCAAGTCAGCCTATGCTACAAAGGCCAAA- 630
Query 561 ATCCGGCGAACAATTGAAGCCGAAGGAATCCCATACACTTATGTCTCATGCAACTTCTTC 620
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 ATCCGGCGAACAATTGAGGCCGAAGGAATCCCATACACTTATGTCTCATGCAACTTCTTC 690
Query 621 GCTGGCTACTTCCTTCCAACTCTGGCACAGCCTGGGGCTACTTCTGCTCCTCGGGATAAG 680
|||||||||||||| |||||||| || |||||||| |||||||||||||| |||||||||
Sbjct 691 GCTGGCTACTTCCTCCCAACTCTAGCTCAGCCTGGTGCTACTTCTGCTCCACGGGATAAG 750
Query 681 GTCATTGTTTTAGGTGAT-GGAACCCTCAAAGCTGTGTTCAACAAGGAAGAAGACATCGC 739
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 751 GTCATTGTTTTAGGTGATGGGAACCC-CAAAGCTGTGTTCAACAAGGAAGAAGACATCG- 808
Query 740 G-ACTTACACCATCAATGCCGTAGATGATCCAACAACTTTGAACAAGATCTTATATGTTA 798
| |||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 809 GAACTTACACAATCAATGCCGTAGATGATCCAAGAACTTTGAACAAGATCTTATATATTA 868
Query 799 GGCCACCAATGAACACTTACTCCTTCAACGATCTTGTCTCGCTTTGGGAGAACAAGATTG 858
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 869 GGCCACCAATGAACACTTACTCATTCAATGATCTTGTCTCGCTTTGGGAGAACAAGATTG 928
Query 859 GCAAAACACTTGAAAGAATCTACGTTCCAGAAGAGCAACTCCTCAAACAGATCATAGAAT 918
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 929 GCAAAACACTTGAAAGAATCTACGTTCCAGAAGAACAACTCCTCAAACAGATCATAGAAT 988
Query 919 CTTCGCCTCCACTCAACGTGATGCTATCCCTTTGTCACTGCGTTTTCGTGAAAGGAGGAC 978
| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 CATCACCCCCACTCAACGTGATGCTATCCCTTTGTCACTGCGTTTTCGTGAAAGGAGGAC 1048
Query 979 ACACAAGCTTTGAAATCGAACCTTCTTTTGGAGTAGAAGCTTCTGAGCTTTACCCTGATG 1038
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1049 ACACAAGCTTTGAAATCGAACCTTCTTTCGGGGTAGAAGCTTCTGAGCTTTACCCTGATG 1108
Query 1039 TCAAATACACTACTGTTGATGAAATCCTCAACCAGTATGTCTAAAGCTTAGTGCTTAACT 1098
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1109 TCAAATACACTACTGTTGATGAAATCCTCAACCAATATGTCTAAAGCTGAGTGCTTAACG 1168
Query 1099 ACAGTGTCACTCCATGACTCTCCACACTTTTTATTTTGGGTTTTAAATAATTGGCTA 1155
| | | ||||||||||||| ||| ||||||||||||||||||| ||||||
Sbjct 1169 A--G----A----ATGACTCTCCACAATTTGTATTTTGGGTTTTAAATAAGTGGCTA 1215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56676415305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5