BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg490696

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G39235.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   638    0.0  


> AT4G39235.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G05570.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr4:18268049-18269212 FORWARD LENGTH=544
Length=544

 Score =  638 bits (345),  Expect = 0.0
 Identities = 449/498 (90%), Gaps = 12/498 (2%)
 Strand=Plus/Plus

Query  1    CTAAACAAGTCTAGAACCGCCTCTTCTGGTTTAGGAGGagaagaagaa-ga-aagaagtg  58
            |||||||||||||||||| |||||||| |||||| || |||||||||| || | ||| ||
Sbjct  25   CTAAACAAGTCTAGAACCTCCTCTTCTCGTTTAGAAGAAGAAGAAGAAGGAGACGAATTG  84

Query  59   aaagaTCTTGTGGAGGAACAAATGGAGACCCAGAAAAATCAAGCCGAAATCCCTCCGAAA  118
            |||||||| || |||| ||||||||||||||||| ||||     | |||    |||||||
Sbjct  85   AAAGATCTCGTAGAGGTACAAATGGAGACCCAGACAAAT-----C-AAA---GTCCGAAA  135

Query  119  CCGGCCATGACTTCATGTAGGAAGAAGGTAAAGGATGATGCCACTTTCTTTGAGGACGTC  178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  136  CCGGCCATGACTTCATGTAGGAAGAAGGTAAAGGATGATGCCACTTTCTTTGAGGACGTG  195

Query  179  AAAGATCACATTGATGACTTCATACATGCCTCCATGGATGAACACAAGACCTGTTTCCAG  238
            |||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||| 
Sbjct  196  AAAGATCACATTGATGACTTTATACATGCCTCAATGGATGAACACAAGTCCTGTTTCCAA  255

Query  239  AAGACCATTAAGAAGATGTTTGGATTATCAAAGGCGGTCGCAGAGAAGCAAGCTGAGGAG  298
            |||||||| || |||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct  256  AAGACCATCAAAAAGATGTTTGGATTGTCAAAGGCGGTCGCAGAGAAGCAAGCTGTGGAG  315

Query  299  GCAAAGGGAGTCGAGAGTCAATTGCCTCTTCAGACGACAGTGTCAGAGTAAAGACTAGTT  358
            ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
Sbjct  316  GCAAAGGGAGTCGAGAGTCAATTGCCTCTTCAGACGACAGTCTCGGAGTAAAGACTAGCT  375

Query  359  TCTTTCCAGCTGGGTTTGATGTCGTTTCTCTTGTTTAAAATCACATCCAAGTTTCTTTGT  418
            |||||||  ||| ||||||||||||||||||||||||| |||||||  ||||||||||||
Sbjct  376  TCTTTCCTTCTGCGTTTGATGTCGTTTCTCTTGTTTAACATCACATATAAGTTTCTTTGT  435

Query  419  AAATTAACTTTTCTGACCTAAGAAACAAGATTAAAATTCAAACATTCCAAATGTTATTGG  478
            |||| |||||||| |||||| || || |||||  |||||||||||| |||||||||||||
Sbjct  436  AAATCAACTTTTCCGACCTA-GAGACCAGATTTGAATTCAAACATTTCAAATGTTATTGG  494

Query  479  TTTGATCTTTGTCAAACA  496
            |||||||||||| |||||
Sbjct  495  TTTGATCTTTGTTAAACA  512



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23660283237


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5