BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490700
Length=788
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circ... 760 0.0
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circ... 300 2e-80
> AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circadian
rhythm, and RNA binding 1 | chr4:18273899-18275079 REVERSE
LENGTH=898
Length=898
Score = 760 bits (411), Expect = 0.0
Identities = 713/846 (84%), Gaps = 71/846 (8%)
Strand=Plus/Plus
Query 1 GTTATTACGTCACACCTCTTCTATAAATTAAGGCTGCGTCTTATCATCC-CAAATCATAC 59
||||||||||||||||| |||||||||||||||||||||||||||| || ||||||| |
Sbjct 8 GTTATTACGTCACACCTGTTCTATAAATTAAGGCTGCGTCTTATCA-CCTCAAATCACAT 66
Query 60 AAGtctctctc-t-c----t------c--A-TT-T-TTCGAAACCCTaaaaaaaaaTGTC 102
||||||||||| | | | | | || | ||| ||| |||||||||||||
Sbjct 67 AAGTCTCTCTCTTACATTTTGAAACCCTAATTTCTCTTCTTTTCCCCAAAAAAAAATGTC 126
Query 103 AGAAGTTGAGTACCGGTGCTTTGTCGGCGGCCTTGCCTGGGCCACCCAA-GATCAAGATC 161
||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||
Sbjct 127 TGAAGTTGAGTACCGGTGCTTTGTCGGCGGCCTTGCCTGGGCCA-CCAATGATGAAGATC 185
Query 162 TAGAAAGGACCTTCTCACAATTCGGCGACGTTCTCGATTCTAAGATCATTAACGATCGCG 221
| ||||||| |||||||| |||||||||||| |||||||||||||||||||||| ||||
Sbjct 186 TTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGATCATTAACGACCGCG 245
Query 222 AGACTGGAAGGTCAAGGGGATTCGGATTCGTCACCTTCAAGGACGAGAAAGCCATGAGGG 281
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 AGAGTGGAAGATCAAGGGGATTCGGATTCGTCACCTTCAAGGACGAGAAAGCCATGAGGG 305
Query 282 ACGCGATTGAGGAGATGAACGGAAAAGAGCTCGATGGACGTACCATCACCGTGAACGAGG 341
| |||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 306 ATGCGATTGAAGAGATGAACGGTAAAGAGCTCGATGGACGTGTCATCACCGTGAACGAGG 365
Query 342 CACAGTCAAGAGGTAGCGGCGGTGG---AGGAGGCCGTGGAGGCGGTGGAGGTGGTTACC 398
| ||||| ||||||||||||||||| |||||||||||| || | || ||||||||||
Sbjct 366 CTCAGTCGAGAGGTAGCGGCGGTGGCGGAGGAGGCCGTGGTGGAAGCGGTGGTGGTTACC 425
Query 399 GCAGCGGAGGCGGTGGCGGATACGGAGGAGGAGGTGGTGGT---TACG-AG-AG-ACGTA 452
|||||||||||||||| |||||| |||||| ||||| || ||| || || | |
Sbjct 426 GCAGCGGAGGCGGTGGTGGATACTCAGGAGGCGGTGGCGGCGGATACTCAGGAGGAGGCG 485
Query 453 gtggaggttacg-gat-c-tggtggagg---cgg-t--ggtggccgaggaggagg---ag 500
|||| ||||||| || | | | ||||| ||| | ||||| | || || || ||
Sbjct 486 GTGGTGGTTACGAGAGACGTAGCGGAGGTTACGGATCTGGTGGAGGCGGTGGTGGCCGAG 545
Query 501 gatacggtggtggtggtggtcgccgtgagggaggtggctacggaggaggtgACGGTGGAA 560
|||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct 546 GATACGGTGGTGGTGGA---CGCCGTGAGGGAGGTGGCTACGGAGGCGGTGATGGTGGAA 602
Query 561 GTTACGGAGGAAGCGGTGGAGGTGGCTGGTAATCAAAGAT----T-G----C---C-GAT 607
|||||||||| |||||| || ||||||||||||||||| | | | | | |
Sbjct 603 GTTACGGAGG---CGGTGGTGGCGGCTGGTAATCAAAGATAGAGTTGTTTGCGTGCTGCT 659
Query 608 -CT--GTTTTTGGTTTAGATTTGGTTTTGTGTCACCGTTTGTCTCTGGTTTGGTTATCGT 664
|| ||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 660 GCTCTGTTTTTGGTTTAGATTTGGTTTTGTGTCACCACTT--CT--GGTTTGGTTATCGT 715
Query 665 TCGTTTGGTTTACTTTTTTGATGAAACA-TATCGTTTAAAGTCTTCTTTGTCTGGAACGA 723
|||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||
Sbjct 716 TCGTTTGGTTTACTTTTTTGATGAAACAGTTTCGTTTAA-GTCTTCTTTGTCTGGAACGA 774
Query 724 AATGTTAATTCGCGTGTTGTTCACTAAATT-ATAAGGTTTCCTCTTAACCAGATTTGAGA 782
||||||||||||||||||||| |||||||| |||| ||||||| ||||||||||| ||||
Sbjct 775 AATGTTAATTCGCGTGTTGTTTACTAAATTTATAACGTTTCCTTTTAACCAGATTCGAGA 834
Query 783 TTTTCC 788
||||||
Sbjct 835 TTTTCC 840
> AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circadian
rhythm, and rna binding 2 | chr2:9265249-9266393 REVERSE
LENGTH=836
Length=836
Score = 300 bits (162), Expect = 2e-80
Identities = 287/347 (83%), Gaps = 10/347 (3%)
Strand=Plus/Plus
Query 107 GTTGAGTACCGGTGCTTTGTCGGCGGCCTTGCCTGGGCCACCCAAGATCA-AGATCTAGA 165
|||||||| |||||||| || || || || || |||||||| | || || || ||| ||
Sbjct 93 GTTGAGTATCGGTGCTTCGTTGGAGGTCTAGCATGGGCCACTGATGA-CAGAGCTCTTGA 151
Query 166 -AAGGACCTTCTCACAATTCGGCGACGTTCTCGATTCTAAGATCATTAACGATCGCGAGA 224
| | ||||| | |||| |||||||||| | ||||| ||||||||||||||||| ||||
Sbjct 152 GACTG-CCTTCGCTCAATACGGCGACGTTATTGATTCCAAGATCATTAACGATCGTGAGA 210
Query 225 CTGGAAGGTCAAGGGGATTCGGATTCGTCACCTTCAAGGACGAGAAAGCCATGAGGGACG 284
||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| |
Sbjct 211 CTGGAAGATCAAGGGGATTCGGATTCGTCACCTTCAAGGATGAGAAAGCCATGAAGGATG 270
Query 285 CGATTGAGGAGA-TGAACGGAAAAGAGCTCGATGGACGTACCATCACCGTGAACGAGGCA 343
||||||||| || |||||||| |||| |||||||| |||| |||||| || ||||||||
Sbjct 271 CGATTGAGG-GAATGAACGGACAAGATCTCGATGGCCGTAGCATCACTGTTAACGAGGCT 329
Query 344 CAGTCAAGAGGTAGCGGCGGTGGAGGAGGCC---GTGGAGGCGGTGGAGGTGGTTACCGC 400
|||||| |||| ||||| || || ||||||| ||||||| ||||| ||||| ||||||
Sbjct 330 CAGTCACGAGGAAGCGGTGGCGGCGGAGGCCACCGTGGAGGTGGTGGCGGTGGATACCGC 389
Query 401 AGCGGAGGCGGTGGCGGATACGGAGGAGGAGGTGGTGGTTACGAGAG 447
||||| || ||||| || ||| || ||||||||| | |||| |||
Sbjct 390 AGCGGCGGTGGTGGAGGTTACTCCGGTGGAGGTGGTAGCTACG-GAG 435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38328654161
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5