BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490704
Length=2865
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39270.1 | Symbols: | Leucine-rich repeat protein kinase fa... 4205 0.0
> AT4G39270.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr4:18276505-18279848 FORWARD LENGTH=3102
Length=3102
Score = 4205 bits (2277), Expect = 0.0
Identities = 2621/2787 (94%), Gaps = 23/2787 (1%)
Strand=Plus/Plus
Query 5 TCACAAAAAGAAAGTTTCCTTTTTTGATCCGATTCGAAGGAAAACC--aaaaaaaa-aGA 61
|||||||||||||||||||||| |||||| ||||||||||||| || |||||||| |||
Sbjct 204 TCACAAAAAGAAAGTTTCCTTTATTGATCGGATTCGAAGGAAACCCAAAAAAAAAAGAGA 263
Query 62 TTTGATTATTTCCATAAATCGCGAAGATTCTTTCTAATTGAATCTTAGGCGATGAATGGC 121
|||||||||||||||||||||||||| || |||| ||||||||||||||| |||||||||
Sbjct 264 TTTGATTATTTCCATAAATCGCGAAGCTTTTTTCCAATTGAATCTTAGGCAATGAATGGC 323
Query 122 TTTTAAGTTTTTCGAATTACTA---GTCATCAGGGTTTAGAGAAACCATGGTGGTTCTGA 178
||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||
Sbjct 324 -TTTAAGTTTTTCGAAGTACTAGTCGTCACCAGGGTTTAGAGAAACCATGGTGGTTCTGA 382
Query 179 AGAAGACATCCTTGCTGGTCTTCTTCTTCTTCTTTGTCTTGTTGTTAGAGTCAACGTTCG 238
||||||||||||| ||||||||||||| ||| | |||||||||||||||||||||| |
Sbjct 383 GGAAGACATCCTTGTTGGTCTTCTTCTTATTCCTCCTCTTGTTGTTAGAGTCAACGTTTG 442
Query 239 AGCAACAGACAAGTTCTCTGGATGAGAAATCGGCGCTTCTGTTGTTAAGGTCTTCTCTTG 298
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 443 AGCAACAGACAAGTTCTCTGAATGAGAAATCGGCGCTTCTGCTGTTAAGGTCTTCTCTTG 502
Query 299 GGTTAAGGAGCAGAGATTGGCCTGTGAAAGGCAATCCTTGTCTGAACTGGAACGGCAT-A 357
||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 503 GGTTACGAAGCAGAGATTGGCCTGTAAAAGGCAATCCTTGTCTGAACTGGAACGGCATCA 562
Query 358 GAATGTGATCAGAAAGGTAGAGTAATTAAGGTCAACATTTCAGGGTTCAGAAGGACTAGG 417
||||||||||||| |||||||||| |||| ||||||||||||||||||||||||| |||
Sbjct 563 -AATGTGATCAGAATGGTAGAGTAACTAAGATCAACATTTCAGGGTTCAGAAGGACAAGG 621
Query 418 CTTGGGAATCGAAACCCGCAATTCTCAGTTGATTCGCTTGTCAATCTCACCCGTTTGGCT 477
||||||||| ||||||| |||||||||||| ||| || ||||||||||||||| | |||
Sbjct 622 ATTGGGAATCAAAACCCGGAATTCTCAGTTGGTTCTCTCGTCAATCTCACCCGTCTAGCT 681
Query 478 TCCTTCAATGCCTCAAGGTTCTCTCTTCCAGGTCCAATCCCGGTTTTGTTCGGATCGAGT 537
|||||||| ||||||||||||| |||||||||||||||||||| |||||| |||||||||
Sbjct 682 TCCTTCAACGCCTCAAGGTTCTATCTTCCAGGTCCAATCCCGGCTTTGTTTGGATCGAGT 741
Query 538 CTGTTGACTTTAGAGGTGTTGGACCTTAGCTCTTGTTCAATCACAGGAACCATCCCTGAA 597
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 742 CTGTTGACTTTAGAGGTGTTGGACCTTAGCTCCTGTTCAATCACAGGAACCATCCCTGAA 801
Query 598 AGTTTGACTCGGTTAACACACCTCAAAGTTCTTGATCTTTCAAAGAATGCAATCAATGGG 657
||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 802 AGTTTGACTCGGTTATCACATCTCAAAGTTCTTGATCTTTCAAAGAATGCGATCAATGGG 861
Query 658 GATATTCCTCTGTCTCTTACCTCTCTTCGGAATTTATCAATCCTTGATGTTTCCTCAAAC 717
|||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||
Sbjct 862 GATATTCCTCTGTCTCTTACCTCTCTTCAGAATCTATCAATCCTTGATCTTTCCTCAAAC 921
Query 718 TTGGTGTTTGGTTTGATTCCTGCTAATATTGGGGCACTCTCAAAGCTCCAGCGTCTGAAT 777
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 TCGGTGTTTGGTTCGATTCCTGCTAATATTGGGGCACTCTCAAAGCTCCAGCGTCTGAAT 981
Query 778 CTTTCGCATAACACCTTGTA-TTCTTCAATACCTCCATCACTCGGAGACCT-TACTGCTT 835
||||||| |||||||||| | |||||||||||||||||||||||||||||| | ||| ||
Sbjct 982 CTTTCGCGTAACACCTTG-ACTTCTTCAATACCTCCATCACTCGGAGACCTCT-CTGTTT 1039
Query 836 TAGTCGACCTTGATCTCAGCTTCAAC-GACCTGTCAGGTTCGGTTCCATCCGATTTGAAA 894
|| | ||||||||||||||||||||| || ||||||||||||||||||| |||||||||
Sbjct 1040 TAATTGACCTTGATCTCAGCTTCAACGGA-ATGTCAGGTTCGGTTCCATCAGATTTGAAA 1098
Query 895 GGGCTAAGGAACTTACAGACACTT-GTAATTGCGGGAAATAGCCTTTCAGGATCCCTACC 953
|||||||||||||| |||||| || ||||||||||||||| |||||||||||||||||||
Sbjct 1099 GGGCTAAGGAACTTGCAGACA-TTGGTAATTGCGGGAAATCGCCTTTCAGGATCCCTACC 1157
Query 954 TCCTGATCTGTTCAGTTTCCTGAGTAAACTTCATATTGTTGACTTCAGAGGCAGTGGTTT 1013
|||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 1158 TCCTGATCTGTTTAGTTTGCTGAGTAAACTTCAGATCATTGACTTCAGAGGCAGTGGTTT 1217
Query 1014 CATAGGCGCTTTACCGTCCAGGTTATGGTTGTTACCGGAGCTGAAGTTTCTAGATCTTTC 1073
||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||
Sbjct 1218 CATAGGCGCTTTACCGTCCAGGTTATGGTCGTTACCGGAGCTCAAGTTTCTAGATATTTC 1277
Query 1074 TGGAAATCACTTCTCTGACTTGCTGCCTAATACCACTGTCAGTTTTGATTCTACTGTCTC 1133
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 TGGAAATCACTTCTCTGACATGCTGCCTAATACCACTGTCAGTTTTGATTCTACTGTCTC 1337
Query 1134 CATGCTTAACATATCCGGGAACATGTTTTACGGCAATCTCACACTTTTACTGAGAAGGTT 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1338 CATGCTTAACATATCCGGGAACATGTTTTACGGCAATCTCACACTTTTACTGACAAGGTT 1397
Query 1194 CCAAGTTGTTGATCTGTCAGAAAACTATTTTGAAGGTAAAGTTCCTGACTTTGTGCCAAC 1253
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1398 CCAAGTTGTTGACCTGTCAGAAAACTATTTTGAAGGTAAAATTCCTGACTTTGTGCCAAC 1457
Query 1254 CA-ATGCTTCATTGAGCAACAATTGTCTTCAGGGCCCAGCGAACCAGCGGAAATCGTCGG 1312
|| | |||||||||||||||||||||||||||||||||| ||| |||||||| | |||||
Sbjct 1458 CAGA-GCTTCATTGAGCAACAATTGTCTTCAGGGCCCAGAGAAGCAGCGGAAGTTGTCGG 1516
Query 1313 ATTGCGCTTCCTTTTATTCCAACAAGGGCTTAACTTTCAACAATTCCGGACCTCCTGAAG 1372
||||| ||| |||||||| || |||||||||||||||||||||| ||||| | |||||
Sbjct 1517 ATTGCACTTTGTTTTATTCAAAAAAGGGCTTAACTTTCAACAATTTCGGACAACATGAAG 1576
Query 1373 AAAAGAAGAGTCCTAAATCTTCCTGGTTAAGCCAAACGAAAATAGTTATACTTGCTGCAG 1432
| ||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1577 AGAAGAAGAGTTCTAAAACTTCCTGGTTAAGCCACACGAAAATAGTTATACTTGCTGCAG 1636
Query 1433 TTGGAGGGTCTATATTGCTTATGCTCATTCTCATAGTGTTACCAATAACAGTGAGTTTCT 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1637 TTGGAGGGTCTATATTGCTTATGCTCATTCTCATAGTGTTACCAATAACAGTGAGTTTCT 1696
Query 1493 GTGTCCGTCGAAGAAACAGATCATCAACAAGTAATCATCCTAGAGGGAGACACAACGGAG 1552
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1697 GTGTCCGTCGAAGAAACAGATCATCAACAAGTAATCATCCTAGAGGAAGACACAACGGTG 1756
Query 1553 TTGGCCCATTGCCTCCTGATGAAACACTTCCCTCAAGAGGAGGAGTCTCTATAAACTTTG 1612
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1757 TTGGCCCATTACCTCCTGATGAAACACTTCCCTCAAGAGGAGGAGTCTCTATAAACTTTG 1816
Query 1613 GGAGTCTTGGATCATCATTTAACTATCAGCAGCTGCTCAATGCCACCAAGGATTTCAGTG 1672
||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||
Sbjct 1817 GGAGTCTTGGATCATCATTTACCTATCAGCAGTTGCTCAATGCCACCAAGGAGTTCAGTG 1876
Query 1673 ATTCGAACCTGATCAAGAAAGGACATTCGGGGGATCTTTTCAAGGGCGTTCTAGAAAACG 1732
|||| |||||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 1877 ATTCAAACCTGATCAAGAAAGGACAATCTGGGGATCTTTTCAAGGGAGTTCTAGAAAACG 1936
Query 1733 GAGTTCAAATCGTTGTAAAAAGAATCAGCTTGGAATCTACAAAGAACAACGAAGCATATC 1792
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1937 GAGTTCAGATCGTTGTGAAAAGAATCAGCTTGGAATCTACAAAGAACAACGAAGCTTATC 1996
Query 1793 TTACCGAGTTGGATTTCTTCAGCCGGTTTGCGCATCCAAGAATAGTCCCATTCGTAGGGA 1852
| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1997 TAACCGAGTTGGATTTCTTCAGCCGGTTTGCGCATCCGAGAATAATCCCATTCGTAGGGA 2056
Query 1853 AGAGCTTAGAGAGCACAACCCATAAGTTCTTGGTGTACAAATACATGCTGAATAGAGATT 1912
|||||||||||||| |||| |||||||||||||| ||||| |||||||||||||| ||||
Sbjct 2057 AGAGCTTAGAGAGCGCAACTCATAAGTTCTTGGTATACAAGTACATGCTGAATAGGGATT 2116
Query 1913 TACCAAGCTCATTGTTCTATAAATCCAATTCCCTAGTTGACAACGGATTGAGATCTCTCG 1972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2117 TACCAAGCTCATTGTTCTATAAATCCAATTCCCTAGTTGACAACGGATTGAGATCTCTCG 2176
Query 1973 ATTGGATCACCAGACTGAAAATAGCACTGGGAGTAGCAGAGGGACTTGCTTATCTGCACC 2032
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 2177 ATTGGATCACCAGACTGAAAATAGCATTGGGAGTAGCAGAGGGACTTGCTTACCTGCACC 2236
Query 2033 ATGATTGCTCACCATCTGTCGTCCACAGGGATGTTCAAGCGAGCAGCATTCTGTTGGATG 2092
|||||||||||||||| ||||||||||||||| ||||||| || |||||||| |||||||
Sbjct 2237 ATGATTGCTCACCATCCGTCGTCCACAGGGATATTCAAGCAAGTAGCATTCTCTTGGATG 2296
Query 2093 ATAAGTTTGAAGTTAGGCTTGGGAGCTTTAGCAAAGCTTGCCATCAAGAAAACAATGGCC 2152
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 2297 ATAAGTTTGAAGTTAGGCTTGGAAGCTTTAGCAAAGCTTGTCATCAAGAAAACAATGGCC 2356
Query 2153 GTCCACGGAAAATAGCCCGGTTGCTCAGACTATCCCAATCTTCTCAAGAAAGTGTTCCTG 2212
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 2357 GTCCACGGAAAATAGCCCGATTGCTCAGACTATCCCAGTCTTCTCAAGAAAGTGTTCCTG 2416
Query 2213 GGTCTCCAGCTACAGCAACATGTGCATACGATGTGTACTGCTTCGGCAAAATACTTGTGG 2272
||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||| |||
Sbjct 2417 GGTCTGCAGCTACAGCAACATGTGCCTACGATGTGTACTGCTTCGGCAAGATACTTCTGG 2476
Query 2273 AGCTTATCACAGGAAAACTCGGAATCAGCTCATGCCAAGATACCCAGTTCAAGAAAATCC 2332
||||||||||||| |||||||||||||||||||| |||| ||||| ||||| |||||||
Sbjct 2477 AGCTTATCACAGGGAAACTCGGAATCAGCTCATGTAAAGAAACCCAATTCAAAAAAATCC 2536
Query 2333 TAACCGAGATCATGCCTTACATTTCATCACAACAGAAAGAACCCGTAATGAACATTCTAG 2392
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 2537 TAACCGAGATCATGCCTTACATTTCATCGCAAGAGAAAGAACCCGTAATGAACATTCTAG 2596
Query 2393 ACCAATCTCTTCTGGTCGACGAAGACCTCTTAGAAGAAGTCTGGGCAATGGCAATCGTCG 2452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2597 ACCAATCTCTTCTGGTCGACGAAGACCTCTTAGAAGAAGTCTGGGCAATGGCAATCGTCG 2656
Query 2453 CAAGATCTTGTCTCAACCCTAAACCAACGAGACGGCCGCTTATGAGACACATAGTACAAG 2512
| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2657 CTAGATCTTGTCTTAACCCAAAACCAACGAGACGGCCGCTTATGAGACACATAGTACAAG 2716
Query 2513 CCCTCGAGAATCCACTGAGAGTCGTGAGAGAAGACAGCAGCGAATCTGAGAGATTCCGTA 2572
|| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2717 CCTTGGAGAATCCACTGAGAGTTGTGAGAGAAGACAGCAGCGAATCTGAGAGATTCCGTA 2776
Query 2573 CGACGGGATCTTCGAGAGGATCTTCGAGTAGCGGTCGAATTTTTGGTAGTTGGAGACAAA 2632
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 2777 CGACTGGATCTTCGAGAGGATCTTCGAGTAGCGGTCGAATATTTGGTAGTTGGAGACAGA 2836
Query 2633 GCGTGTCTGATCCTGTCGCGGCGGGAACGAGTAGCCTTCTGTCTCAAGCGGAGGGTTTAG 2692
||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct 2837 GCGTGTCTGATCCTGTCGCAGCGGGAACAAGTAGCCTTCTGTCTCAGGCGGAGGGTTTAG 2896
Query 2693 CGACGGGCTCGTCCACGCGAGA--AAGTAGCCGTGGCGCGTCGAGTCGACGAAGTATGAA 2750
|||| || ||||| | |||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 2897 CGACTGGATCGTC-A-GCGAGAGGAAGTAGCCGTGGCGCGTCGAGTCGACGGAGTATGAA 2954
Query 2751 AGATGTATAGAAAGGAAGACACACACA 2777
|||||||||||||| ||||||||||||
Sbjct 2955 AGATGTATAGAAAGAAAGACACACACA 2981
Score = 135 bits (73), Expect = 2e-30
Identities = 87/93 (94%), Gaps = 3/93 (3%)
Strand=Plus/Plus
Query 2776 CAAtttttaatt-tttttt-t-tGTGGTTATGATTTGATCTCTTGTTGATAAAAAATTCC 2832
|||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 3010 CAATTTTTAATTATTTTTTATGTGTGGTTATGATTTGATCTCTTGTTGATAAAAAATTCC 3069
Query 2833 CATAAATTTATAATCTTTTTCGATGATCAAACC 2865
| | |||||||||| ||||||||||||||||||
Sbjct 3070 CGTTAATTTATAATATTTTTCGATGATCAAACC 3102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 142373784234
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5