BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490707
Length=442
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39300.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 508 1e-143
> AT4G39300.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:18286745-18288111
FORWARD LENGTH=669
Length=669
Score = 508 bits (275), Expect = 1e-143
Identities = 291/299 (97%), Gaps = 0/299 (0%)
Strand=Plus/Plus
Query 1 TTGTGCAAAATCTTAAGATCAGAGATGGCGTCGTTTTGCAGATCAGCGTTAATGGCAGGT 60
|||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 67 TTGTGCGAAATCTTAAGATCAAAGATGGCATCGTTTTGCAGATCAGCGTTAATGGCAGGT 126
Query 61 TCCAGAAACTTAGTATCAAGATCCAGAACCGTTACTCAAAAGTCCCTCAATCTTAAACCC 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 127 TCCAGAAACTTAGTATCAAGATCCAGAACCGTAACTCAAAAGTCCCTCAATCTTAAACCC 186
Query 121 ACAACTACTTCATCTCCTTTCGCTTCAATGTCCCAATCCATCCCTCGCGCTTCAAGGGTT 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 187 ACAACTACTTCATCTCCTTTCGCTTCAATGTCTCAATCCATCCCTCGCGCTTCGAGGGTT 246
Query 181 CTCTCTGCTTTGGGAAGTGTTGAAACGATGATTCCACTTCACAGTGCCGTTGCTTCAGCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 CTCTCTGCTTTGGGAAGTGTTGAAACGATGATTCCACTTCACAGTGCCGTTGCTTCAGCT 306
Query 241 CGGCTCCGGTCAAGCATCGCTGCTGATTCCTCTTGTTGGAGCTTGCTTTCTCAGGAACT 299
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 307 CGTCTCCGGTCAAGCATCGCTGCTGATTCCTCTTGTTGGAGCTTGCTTTCTCAGGGACT 365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21011919082
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5