BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490711 Length=384 Score E Sequences producing significant alignments: (Bits) Value AT4G39340.1 | Symbols: | Protein of unknown function (DUF1278)... 560 3e-159 AT4G39330.1 | Symbols: ATCAD9, CAD9 | cinnamyl alcohol dehydrog... 377 3e-104 AT2G21740.1 | Symbols: | Protein of unknown function (DUF1278)... 204 6e-52 AT2G21895.1 | Symbols: | Encodes a ECA1 gametogenesis related ... 102 2e-21 > AT4G39340.1 | Symbols: | Protein of unknown function (DUF1278) | chr4:18293129-18293512 REVERSE LENGTH=384 Length=384 Score = 560 bits (303), Expect = 3e-159 Identities = 358/385 (93%), Gaps = 2/385 (1%) Strand=Plus/Plus Query 1 ATGTCTTC-ACACACTACTTTCCTTTTCTCCACCGTCACACTTCTCCTCATCTTCCTAAA 59 ||| |||| | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1 ATGGCTTCGA-ACACTACTTTCCTCTTCTCCACCGTCACACTTCTCATCATCCTCCTAAA 59 Query 60 CACCACCGTCTCCGGCAGAGATCTCCCGGCGGAGTCATCAACCAACATAGCGGCGAGGCT 119 ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 60 CACCACCGTCTCCGGTAGAGATCTCCCAGCGGAGTCATCAACCAACATAGCTGCGAGGCT 119 Query 120 TCAAAGTGGAGGGCTAATGGAATGCTGGAACGCATTATACGAGCTGAAATCGTGCACCAA 179 ||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 120 CCAAAGTGGAGGACTGATGGAATGCTGGAACGCATTATACGAGCTGAAATCATGCACCAA 179 Query 180 TGAGATCGTTCTCTTCTTCCTCAACGGTGAAACAAAACTTGGCGTTAGTTGTTGCGAAGC 239 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct 180 CGAGATCGTTCTCTTCTTCCTCAACGGTGAAACAAAACTTGGTGTTAGTTGTTGCGAATC 239 Query 240 CGTCGATATCATCACTACCAATTGTTGGCCGGCAATGCTCACTTCTCTCGGATTTACGCC 299 ||| || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| Sbjct 240 CGTAGACATCATCACCACCAATTGCTGGCCGGCGATGCTCACTTCTCTCGGATTTACGCC 299 Query 300 TGAGGAAGCCAATGTCCTTCGTGGCTTTTGTCAGAATCCAAACTCCGACGACTCTTCTCC 359 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 300 TGAGGAAGCTAATGTCCTTCGTGGCTTTTGTCAGAATCCAAACTCCGGCGACTCTTCTCC 359 Query 360 TTCTCCTTCTCCCAAAATAGCTTGA 384 |||| ||||||||||||| |||| Sbjct 360 GGCTCCGTCTCCCAAAATAGTTTGA 384 > AT4G39330.1 | Symbols: ATCAD9, CAD9 | cinnamyl alcohol dehydrogenase 9 | chr4:18291218-18293383 FORWARD LENGTH=1744 Length=1744 Score = 377 bits (204), Expect = 3e-104 Identities = 234/249 (94%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 136 ATGGAATGCTGGAACGCATTATACGAGCTGAAATCGTGCACCAATGAGATCGTTCTCTTC 195 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 1738 ATGGAATGCTGGAACGCATTATACGAGCTGAAATCATGCACCAACGAGATCGTTCTCTTC 1679 Query 196 TTCCTCAACGGTGAAACAAAACTTGGCGTTAGTTGTTGCGAAGCCGTCGATATCATCACT 255 |||||||||||||||||||||||||| ||||||||||||||| |||| || |||||||| Sbjct 1678 TTCCTCAACGGTGAAACAAAACTTGGTGTTAGTTGTTGCGAATCCGTAGACATCATCACC 1619 Query 256 ACCAATTGTTGGCCGGCAATGCTCACTTCTCTCGGATTTACGCCTGAGGAAGCCAATGTC 315 |||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 1618 ACCAATTGCTGGCCGGCGATGCTCACTTCTCTCGGATTTACGCCTGAGGAAGCTAATGTC 1559 Query 316 CTTCGTGGCTTTTGTCAGAATCCAAACTCCGACGACTCTTCTCCTTCTCCTTCTCCCAAA 375 ||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||| Sbjct 1558 CTTCGTGGCTTTTGTCAGAATCCAAACTCCGGCGACTCTTCTCCGGCTCCGTCTCCCAAA 1499 Query 376 ATAGCTTGA 384 |||| |||| Sbjct 1498 ATAGTTTGA 1490 > AT2G21740.1 | Symbols: | Protein of unknown function (DUF1278) | chr2:9281986-9282363 REVERSE LENGTH=378 Length=378 Score = 204 bits (110), Expect = 6e-52 Identities = 244/305 (80%), Gaps = 23/305 (8%) Strand=Plus/Plus Query 68 TCTCCGGCAGAGA-TCTCCC-G-G-CGG-AGTCA-TCAACCAACATAGCGGCGAGGCTTC 121 ||||||| ||| | |||||| | | ||| || | || || ||||||||||| || | || Sbjct 59 TCTCCGGAAGA-ACTCTCCCGGAGACGGAAG--ATTCCACAAACATAGCGGCAAGAC-TC 114 Query 122 AA-AGTGGAGGGCTAATGGAATGCTGGAACGCA-TTATACGAGCTGAAATCGTGCACCAA 179 || | ||||| |||||||| || ||||||||| || || ||||| ||||| |||||||| Sbjct 115 AACGGAGGAGGACTAATGGAGTGTTGGAACGCACTT-TATGAGCTCAAATCATGCACCAA 173 Query 180 TGAGATCGTTCTCTTCTTCCTCAACGGTGAAACAAAACTTGGCGTT-AGTTGTTG-CGAA 237 || ||||||||||||||||||||||||||||| ||||| ||||| | ||| || | || Sbjct 174 CGAAATCGTTCTCTTCTTCCTCAACGGTGAAACCAAACTCGGCGTCGA-TTGCTGTC-AA 231 Query 238 GCCGTCGATATCATCACTACCAATTGTTGGCCGGCAATGCTCACTTCTCTCGGATTTACG 297 |||||||| ||||||| ||| |||||||||| || |||||||| ||||| || ||||| Sbjct 232 GCCGTCGAGGTCATCACCACCGATTGTTGGCCTGCGATGCTCACGTCTCTAGGCTTTAC- 290 Query 298 C-CTGAGGAAGCCAATGTCCTTCGTGGCTTT-TGTCAGAA-TCCAAACTCCGACGACTCT 354 | |||| ||| |||| || |||||||| ||| ||||| | |||||| |||| | ||| Sbjct 291 CTCTGATGAAACCAACGTTCTTCGTGG-TTTCTGTCA-ATCTCCAAATTCCGGTGGTTCT 348 Query 355 TCTCC 359 ||||| Sbjct 349 TCTCC 353 > AT2G21895.1 | Symbols: | Encodes a ECA1 gametogenesis related family protein [pseudogene] | chr2:9333002-9333336 REVERSE LENGTH=335 Length=335 Score = 102 bits (55), Expect = 2e-21 Identities = 78/89 (88%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 127 GGAGGGCTAATGGAATGCTGGAACGCA-TTATACGAGCTGAAATCGTGCACCAATGAGAT 185 ||||| |||||||| || || |||||| || |||||||| || || |||||||| || || Sbjct 102 GGAGGACTAATGGAGTGTTGAAACGCACTT-TACGAGCTCAAGTCATGCACCAACGAAAT 160 Query 186 CGTTCTCTTCTTCCTCAACGGTGAAACAA 214 ||||||||||||||||||||||||||||| Sbjct 161 CGTTCTCTTCTTCCTCAACGGTGAAACAA 189 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18096389640 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5