BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490711
Length=384
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39340.1 | Symbols: | Protein of unknown function (DUF1278)... 560 3e-159
AT4G39330.1 | Symbols: ATCAD9, CAD9 | cinnamyl alcohol dehydrog... 377 3e-104
AT2G21740.1 | Symbols: | Protein of unknown function (DUF1278)... 204 6e-52
AT2G21895.1 | Symbols: | Encodes a ECA1 gametogenesis related ... 102 2e-21
> AT4G39340.1 | Symbols: | Protein of unknown function (DUF1278)
| chr4:18293129-18293512 REVERSE LENGTH=384
Length=384
Score = 560 bits (303), Expect = 3e-159
Identities = 358/385 (93%), Gaps = 2/385 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTC-ACACACTACTTTCCTTTTCTCCACCGTCACACTTCTCCTCATCTTCCTAAA 59
||| |||| | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 1 ATGGCTTCGA-ACACTACTTTCCTCTTCTCCACCGTCACACTTCTCATCATCCTCCTAAA 59
Query 60 CACCACCGTCTCCGGCAGAGATCTCCCGGCGGAGTCATCAACCAACATAGCGGCGAGGCT 119
||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 60 CACCACCGTCTCCGGTAGAGATCTCCCAGCGGAGTCATCAACCAACATAGCTGCGAGGCT 119
Query 120 TCAAAGTGGAGGGCTAATGGAATGCTGGAACGCATTATACGAGCTGAAATCGTGCACCAA 179
||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 120 CCAAAGTGGAGGACTGATGGAATGCTGGAACGCATTATACGAGCTGAAATCATGCACCAA 179
Query 180 TGAGATCGTTCTCTTCTTCCTCAACGGTGAAACAAAACTTGGCGTTAGTTGTTGCGAAGC 239
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 180 CGAGATCGTTCTCTTCTTCCTCAACGGTGAAACAAAACTTGGTGTTAGTTGTTGCGAATC 239
Query 240 CGTCGATATCATCACTACCAATTGTTGGCCGGCAATGCTCACTTCTCTCGGATTTACGCC 299
||| || |||||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 240 CGTAGACATCATCACCACCAATTGCTGGCCGGCGATGCTCACTTCTCTCGGATTTACGCC 299
Query 300 TGAGGAAGCCAATGTCCTTCGTGGCTTTTGTCAGAATCCAAACTCCGACGACTCTTCTCC 359
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 300 TGAGGAAGCTAATGTCCTTCGTGGCTTTTGTCAGAATCCAAACTCCGGCGACTCTTCTCC 359
Query 360 TTCTCCTTCTCCCAAAATAGCTTGA 384
|||| ||||||||||||| ||||
Sbjct 360 GGCTCCGTCTCCCAAAATAGTTTGA 384
> AT4G39330.1 | Symbols: ATCAD9, CAD9 | cinnamyl alcohol dehydrogenase
9 | chr4:18291218-18293383 FORWARD LENGTH=1744
Length=1744
Score = 377 bits (204), Expect = 3e-104
Identities = 234/249 (94%), Gaps = 0/249 (0%)
Strand=Plus/Minus
Query 136 ATGGAATGCTGGAACGCATTATACGAGCTGAAATCGTGCACCAATGAGATCGTTCTCTTC 195
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1738 ATGGAATGCTGGAACGCATTATACGAGCTGAAATCATGCACCAACGAGATCGTTCTCTTC 1679
Query 196 TTCCTCAACGGTGAAACAAAACTTGGCGTTAGTTGTTGCGAAGCCGTCGATATCATCACT 255
|||||||||||||||||||||||||| ||||||||||||||| |||| || ||||||||
Sbjct 1678 TTCCTCAACGGTGAAACAAAACTTGGTGTTAGTTGTTGCGAATCCGTAGACATCATCACC 1619
Query 256 ACCAATTGTTGGCCGGCAATGCTCACTTCTCTCGGATTTACGCCTGAGGAAGCCAATGTC 315
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1618 ACCAATTGCTGGCCGGCGATGCTCACTTCTCTCGGATTTACGCCTGAGGAAGCTAATGTC 1559
Query 316 CTTCGTGGCTTTTGTCAGAATCCAAACTCCGACGACTCTTCTCCTTCTCCTTCTCCCAAA 375
||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||
Sbjct 1558 CTTCGTGGCTTTTGTCAGAATCCAAACTCCGGCGACTCTTCTCCGGCTCCGTCTCCCAAA 1499
Query 376 ATAGCTTGA 384
|||| ||||
Sbjct 1498 ATAGTTTGA 1490
> AT2G21740.1 | Symbols: | Protein of unknown function (DUF1278)
| chr2:9281986-9282363 REVERSE LENGTH=378
Length=378
Score = 204 bits (110), Expect = 6e-52
Identities = 244/305 (80%), Gaps = 23/305 (8%)
Strand=Plus/Plus
Query 68 TCTCCGGCAGAGA-TCTCCC-G-G-CGG-AGTCA-TCAACCAACATAGCGGCGAGGCTTC 121
||||||| ||| | |||||| | | ||| || | || || ||||||||||| || | ||
Sbjct 59 TCTCCGGAAGA-ACTCTCCCGGAGACGGAAG--ATTCCACAAACATAGCGGCAAGAC-TC 114
Query 122 AA-AGTGGAGGGCTAATGGAATGCTGGAACGCA-TTATACGAGCTGAAATCGTGCACCAA 179
|| | ||||| |||||||| || ||||||||| || || ||||| ||||| ||||||||
Sbjct 115 AACGGAGGAGGACTAATGGAGTGTTGGAACGCACTT-TATGAGCTCAAATCATGCACCAA 173
Query 180 TGAGATCGTTCTCTTCTTCCTCAACGGTGAAACAAAACTTGGCGTT-AGTTGTTG-CGAA 237
|| ||||||||||||||||||||||||||||| ||||| ||||| | ||| || | ||
Sbjct 174 CGAAATCGTTCTCTTCTTCCTCAACGGTGAAACCAAACTCGGCGTCGA-TTGCTGTC-AA 231
Query 238 GCCGTCGATATCATCACTACCAATTGTTGGCCGGCAATGCTCACTTCTCTCGGATTTACG 297
|||||||| ||||||| ||| |||||||||| || |||||||| ||||| || |||||
Sbjct 232 GCCGTCGAGGTCATCACCACCGATTGTTGGCCTGCGATGCTCACGTCTCTAGGCTTTAC- 290
Query 298 C-CTGAGGAAGCCAATGTCCTTCGTGGCTTT-TGTCAGAA-TCCAAACTCCGACGACTCT 354
| |||| ||| |||| || |||||||| ||| ||||| | |||||| |||| | |||
Sbjct 291 CTCTGATGAAACCAACGTTCTTCGTGG-TTTCTGTCA-ATCTCCAAATTCCGGTGGTTCT 348
Query 355 TCTCC 359
|||||
Sbjct 349 TCTCC 353
> AT2G21895.1 | Symbols: | Encodes a ECA1 gametogenesis related
family protein [pseudogene] | chr2:9333002-9333336 REVERSE
LENGTH=335
Length=335
Score = 102 bits (55), Expect = 2e-21
Identities = 78/89 (88%), Gaps = 2/89 (2%)
Strand=Plus/Plus
Query 127 GGAGGGCTAATGGAATGCTGGAACGCA-TTATACGAGCTGAAATCGTGCACCAATGAGAT 185
||||| |||||||| || || |||||| || |||||||| || || |||||||| || ||
Sbjct 102 GGAGGACTAATGGAGTGTTGAAACGCACTT-TACGAGCTCAAGTCATGCACCAACGAAAT 160
Query 186 CGTTCTCTTCTTCCTCAACGGTGAAACAA 214
|||||||||||||||||||||||||||||
Sbjct 161 CGTTCTCTTCTTCCTCAACGGTGAAACAA 189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18096389640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5