BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490713
Length=635
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39360.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 444 5e-124
> AT4G39360.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G21780.1);
Has 13 Blast hits to 13 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:18302890-18303619
FORWARD LENGTH=730
Length=730
Score = 444 bits (240), Expect = 5e-124
Identities = 573/715 (80%), Gaps = 98/715 (14%)
Strand=Plus/Plus
Query 1 TATATaaaagacgacaaaacaaaacgatacaaac-aaaaac-acaacGATTTACACGTAA 58
|||||||||||||||||||| ||||||||| ||| |||||| ||||| | |||||||||
Sbjct 23 TATATAAAAGACGACAAAACGAAACGATAC-AACAAAAAACAACAAC-A-ATACACGTAA 79
Query 59 ACGTGATCAGAGTGGTCAAAAGGGAGACAAGATAAA-T---TCG---ATC-GA-A-T-G- 106
||||||||| ||||||||||| |||||||||||||| | ||| ||| || | | |
Sbjct 80 ACGTGATCAAAGTGGTCAAAAAGGAGACAAGATAAATTCGATCGACAATCAGATATTCGA 139
Query 107 ----GA--GA-C-----G-G-AGA-TTGTTTTTTCTGGAGAATCGGAGACTGCGTTTTCG 151
|| | | | | ||| ||| |||||||| ||| |||| | | ||||||||
Sbjct 140 AAATGATCAATCAAATGGAGAAGATTTG-TTTTTCTGAAGACTCGGGGGTTACGTTTTCG 198
Query 152 GAAACGGAGATGGAGGCGGCGGAGCAGCTAGTGCAGTTGAGCGAAGAGGATACGTTGAGC 211
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 GAGACGGAGATTGAGGCGGCGGAGCAGCTAGTGCAGTTGAGCGAAGAGGATACGTTGAGC 258
Query 212 TGTAGCAGCGGCGGCACTGGCTGGAGCGTTT-G-C-GGTTACGACGG-----A------- 256
|||||||||||| |||||||| ||||||| | | ||||||||||| |
Sbjct 259 TGTAGCAGCGGC---ACTGGCTGTAGCGTTTCGACCGGTTACGACGGGTGTGACGGGAAA 315
Query 257 ---TCAGAAGGCAATGATACGAAGAGACAAGAAGATGTTGTTAGTTCGAAGGTTAGAGAT 313
|||||||||||| ||||||| | |||||| |||||||||||||| ||||||||||||
Sbjct 316 GGATCAGAAGGCAATAATACGAACATACAAGATGATGTTGTTAGTTCAAAGGTTAGAGAT 375
Query 314 CATATTGTCGGAA-AGGAGCAAAACGACGGCGTGTGTAGGAAT-AAGAATGTTACGAACG 371
||||| | || || ||| |||||||||||||||||| |||| | ||||||||||||||||
Sbjct 376 CATATGGCCG-AAGAGGCGCAAAACGACGGCGTGTGGAGGA-TCAAGAATGTTACGAACG 433
Query 372 GACAGAGTTTTATGAAGACGATCATGGAGACGAAGACAAGG-ATAAATAAGAAGAAGAAG 430
||||||||||| ||||| |||| |||||||||| |||| || ||| ||||||||||||||
Sbjct 434 GACAGAGTTTTCTGAAGGCGATGATGGAGACGAGGACA-GGCATACATAAGAAGAAGAAG 492
Query 431 TTTCGGTCTCTCGCGAGCATCTACAGAGCGACGAAGGAGATGACGAAAG-TTGAAT-AGT 488
||||||||||| | ||||||||||||||||||||| |||||||||| || || ||| |||
Sbjct 493 TTTCGGTCTCTTGAGAGCATCTACAGAGCGACGAACGAGATGACGAGAGATT-AATTAGT 551
Query 489 -TTAATG--A-CGT---T---T---GTTAAAAG-CGT--GT--G-----T-T-TA-TTA- 521
|||| | | | | | | ||| || | ||| || | | | || |||
Sbjct 552 CTTAAGGGGATCATGGCTAAATAACGTTTAATGACGTTTGTTAGAAGCGTGTGTAATTAT 611
Query 522 -CTATATGTCCTCGTTTTCAATGGTTTTGTATGTCAGTATGTAATATAGAATCTATTGGC 580
||||||||| |||||||| ||||||||||| || | ||||| || | ||||||| ||
Sbjct 612 ACTATATGTCATCGTTTTCTATGGTTTTGTAAGT-A--ATGTACTA--GTATCTATTAGC 666
Query 581 GTTGAACCGGGAGAAGGTGCTAGAAGAATTGTGAAGCTTTGCAATAACTTTAACA 635
||||||||||||||||||||||||||||||| | |||||||||||| |||||||
Sbjct 667 GTTGAACCGGGAGAAGGTGCTAGAAGAATTG--ACGCTTTGCAATAATTTTAACA 719
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30642829670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5