BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490714 Length=1703 Score E Sequences producing significant alignments: (Bits) Value AT4G39380.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 2008 0.0 > AT4G39380.2 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: TSL-kinase interacting protein 1 (TAIR:AT2G36960.2). | chr4:18309154-18312724 REVERSE LENGTH=2048 Length=2048 Score = 2008 bits (1087), Expect = 0.0 Identities = 1324/1433 (92%), Gaps = 37/1433 (3%) Strand=Plus/Plus Query 1 AAAAATTCCCGCCTGGTTATTTCACTCCTCTCTGCTCTCTCGGAGA-TTTTCT-TCTGA- 57 |||||||||||||||||||||||||||||||||||||||| || || |||||| ||||| Sbjct 3 AAAAATTCCCGCCTGGTTATTTCACTCCTCTCTGCTCTCTGGGCGATTTTTCTCTCTGAT 62 Query 58 TC--CGTCGTTCTCTTCTCGAAGATCTTCGTCTGCTAGCTCCGTCTTCTGTCGTTTAAAT 115 || |||||||||||| |||||||||||| |||||| ||||||||| || |||||||||| Sbjct 63 TCGTCGTCGTTCTCTTTTCGAAGATCTTCCTCTGCTTGCTCCGTCTGCTCTCGTTTAAAT 122 Query 116 GGCTAGAAAGAAGACTGAAACTGCAACTGAGCCCTCAAAGGAGATCAAAGCCAGAGGAAA 175 ||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||| Sbjct 123 GGCTAGAAAGAAGACTGAAACTGCAACTGAGTCCTCAAAGGAGATCAAAGCGAAAGGAAA 182 Query 176 ATTAACCAGAGCCAAGAAGTGTATGAAAACAACTACTAAGAAAT-TCCATCAATCTGGAA 234 ||| |||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| Sbjct 183 ATTCACCAGAGCCAAGAAGTCTATGAAAACAACTACTAAG-AATATCCATCAATCTGGAA 241 Query 235 AACATAATA-TCGGAAGAGAGGAGAAAACCCCTTCTCAATGTTCAGCTAAGCCTCCATCT 293 ||||||||| | |||| ||||||| || | | ||||||||||| ||||| ||||| Sbjct 242 AACATAATAGT-GGAAAAGAGGAG--AA----GTATAAATGTTCAGCTCAGCCTTCATCT 294 Query 294 TCTCAAGATCAAAGGCTGTTACATACCGATGACCAAACTCAAAAAGTACCTGTCCTTGAT 353 |||||||| ||||||||| ||||||| || |||||||||||||||||||||||||||||| Sbjct 295 TCTCAAGAGCAAAGGCTGATACATACTGAAGACCAAACTCAAAAAGTACCTGTCCTTGAT 354 Query 354 CTCCATTCGAGCAAAGAGGTTCAACGTTCTGGAAAAATGAAGTTGCAGCTCTTTCCTTTG 413 ||||||||||||| || |||| ||||||||||||||||||| ||||||||||||||||| Sbjct 355 ATCCATTCGAGCAAGGACGTTCCACGTTCTGGAAAAATGAAGCTGCAGCTCTTTCCTTTG 414 Query 414 GATGCTCATACCCGTGAAGGATTGGAAAAGGATGGCTTACACCCATACTTAGAACTCACT 473 |||||||||||||||||||||||||||||||| ||||| ||||||||||| || |||||| Sbjct 415 GATGCTCATACCCGTGAAGGATTGGAAAAGGACGGCTTTCACCCATACTTGGAGCTCACT 474 Query 474 CTTAGCTCACGGAAGAAGATTTCGTCAGTGCTTCAACGCATTCACAGTAAGTGGGGCAGC 533 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 475 CTTAGCTCACGGAAGAAGATTTCTTCAGTGCTTCAACGCATTCACAGTAAGTGGGGCAGC 534 Query 534 TCAGAGATTGCTCGGGGAGATCCCACGTTGTACCCTTATGATAAATCGGTACTTGCTTCT 593 |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| Sbjct 535 TCAGAGATTGCTCGTGGAGATCCCACGTTGTACCCTTATGATACATCGGTACTTGCTTCT 594 Query 594 GGTCATAAATGGGTAGCAAACAGCAACATCACTACAGGCGATGTCTATGAAGCTATTGGA 653 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 595 GGTCATAAATGGGTAGCAAACAGCAACATCACTACAGGCAATGTCTATGAAGCTATTGGA 654 Query 654 GCTCCTTTTCTTTTCCGCTTAAGGTATGGGTGGTCCTTTGCGACTGAAAATAAAAACAAT 713 ||||| ||| ||||||||||| ||||||||||||||| ||||||||||||||||| |||| Sbjct 655 GCTCCATTTATTTTCCGCTTACGGTATGGGTGGTCCTCTGCGACTGAAAATAAAACCAAT 714 Query 714 GAACCGCCATCTCCTTCAACGCCAGGTACGGGAAAGCAGATGTTTGGTTCAGATAACCAA 773 |||||||||||||||||||| |||||||| |||| ||||||||| |||||||| |||| | Sbjct 715 GAACCGCCATCTCCTTCAACTCCAGGTACAGGAACGCAGATGTTAGGTTCAGAGAACCCA 774 Query 774 TGGACAATGCTGTCCTCTCCAAATCAAGTGACTGACACACCTCCCTTGGAAAACTTACCG 833 | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 775 TTGACTATGCTGTCCTCTCCAAATCAAGTGACTGACACACCTCCCTTGGAAAACTTACCG 834 Query 834 CCTGATGGACAAGTTGAGTCAACGGAGAATAAGATAAACGATGGATCTGGTCCGACATTG 893 | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 835 CATGATGGACAAGTTGAGTCAACGGAGAATAAGATAAACGATGGATCTGGCCCGACATTG 894 Query 894 CTTTTTTGGGATGATGGATTAACAAGCCTAAGTATTGGTGGCTTGCTTTCAGAAGTATCA 953 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 895 CTTTTTTGGGATGATGGATTAACAAGCCTAAGTATTGGTGGCTTGCTTTCAGAAGTATCA 954 Query 954 TTGAAGGGAAACTTTGGAAATCATTGTATAAATTCAAACGCAGGGAATGCAAACGCAACT 1013 |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 955 TTGAAGGGAAACTTTGGAAATCATTGTAAAAATTCAAACGCAGGGAATGCAAATGCAACT 1014 Query 1014 CTCTGGGAAGACAATCTTACTAACATAAGCATTGGAGGTCTGTTTTCTGAGGCTTCTTTA 1073 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1015 CTCTGGGAAGACAATCTTACTAACATAAGCATTGGAGGTCTATTTTCTGAGGCTTCTTTA 1074 Query 1074 CAAGACAGATGTCATATGAACCATGAGC-AGGAACCAGCTCATAATAATAATGATGGTCA 1132 ||||||||||| ||||||||| |||| | || |||||||||||||| | | ||| Sbjct 1075 CAAGACAGATGGCATATGAACAATGAACGAG-AACCAGCTCATAAT------G--G-TCA 1124 Query 1133 GACAAGTGGAAGTATAGGAGGCTTACTCTCCGAAGCATCT-TCTCTAGGAGAGGGAAGGT 1191 | | | ||||||||||||||||||||| || |||||||| | ||||||||| |||||| Sbjct 1125 GTCTATTGGAAGTATAGGAGGCTTACTATCTGAAGCATCAAT-TCTAGGAGAAGGAAGGA 1183 Query 1192 TTAGTGACTGTAACAAAACATGGGAAACAAGGAGAGCTATCAAACAACCACCATTACATC 1251 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1184 TTAGTGACTGTAACAAAACATGGGAAACAAGGAGAGCTATCAAACAACCACCATTACCTC 1243 Query 1252 TAATCTCTGATTCATTAGATGCTTTCCTCGTGAACCAAAC---T--C-G---AGCTCCTT 1302 |||||||||||||||||||||||||||||||||||||||| | | | |||||||| Sbjct 1244 TAATCTCTGATTCATTAGATGCTTTCCTCGTGAACCAAACAGATAACCGTCGAGCTCCTT 1303 Query 1303 GCCCTGCTCCTCTTCCTGAGCCGTCACATTCGTCTATACTTGATGCAGACGATACATGCC 1362 ||| ||| |||||||||||| ||||||||||||||||||| |||||||| ||||| |||| Sbjct 1304 GCCATGCCCCTCTTCCTGAGTCGTCACATTCGTCTATACTCGATGCAGAAGATACGTGCC 1363 Query 1363 ATGCATTTTCATTTCGAAAGCGTACCACAATAACACCAAAGGTTCACGACCAG 1415 ||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1364 ATGCATTTTCATTTCGAAAGCGTACCACAATAACACCAAAGGTTCACGATCAG 1416 Score = 477 bits (258), Expect = 1e-133 Identities = 280/291 (96%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 1413 CAGGTAAGTGGAGAAGCTGAGAAGGAGCAACAGAAAGATGAATCGAACCCCGCAAAACCA 1472 |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||| Sbjct 1462 CAGGTAAGTGGAGAAGTTGAGAAGGAGAAACAGATTGATGAATCGAACCCCGCAAAACCA 1521 Query 1473 TTACTGGGTTCCTCGGTGTTTAATCAAGACAGCAGCCTCGGATTATCAGGAATCAAGTGG 1532 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1522 TTATTGGGTTCCTCGGTGTTTAATCAAGACAGCAGCCTCGGATTATCAGGAATCAAGTGG 1581 Query 1533 GCTGAATCACGGGGACCATTTGATTTCGGCTTATCTTCATCGCGAAAGTTTGCTAATGGA 1592 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1582 GCTGAATCACGGGGACCATTTGATTTCGGCTTATCTTCATCGCGAAAGTTTGCTAATGGA 1641 Query 1593 GACAGCGTAGGCTTTGGAGCTGTGGTAAAAAATTTGCCGGAAATGGAGCCTTTAGAAAAG 1652 ||||||||| ||||||| ||||| |||||| |||||| |||||||||||||||||||||| Sbjct 1642 GACAGCGTAAGCTTTGGTGCTGTAGTAAAAGATTTGCAGGAAATGGAGCCTTTAGAAAAG 1701 Query 1653 AAAATAAAGCTTCAAAAGCATTGAAACTCATGAACAATAATTATTCCACAG 1703 ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1702 AAAATAAAGCTTCAAAAGCATTGAAACTCATGAACAATAATCATTCCACAG 1752 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 84186313965 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5