BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490714
Length=1703
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39380.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 2008 0.0
> AT4G39380.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 14 plant structures;
EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana
protein match is: TSL-kinase interacting protein 1 (TAIR:AT2G36960.2).
| chr4:18309154-18312724 REVERSE LENGTH=2048
Length=2048
Score = 2008 bits (1087), Expect = 0.0
Identities = 1324/1433 (92%), Gaps = 37/1433 (3%)
Strand=Plus/Plus
Query 1 AAAAATTCCCGCCTGGTTATTTCACTCCTCTCTGCTCTCTCGGAGA-TTTTCT-TCTGA- 57
|||||||||||||||||||||||||||||||||||||||| || || |||||| |||||
Sbjct 3 AAAAATTCCCGCCTGGTTATTTCACTCCTCTCTGCTCTCTGGGCGATTTTTCTCTCTGAT 62
Query 58 TC--CGTCGTTCTCTTCTCGAAGATCTTCGTCTGCTAGCTCCGTCTTCTGTCGTTTAAAT 115
|| |||||||||||| |||||||||||| |||||| ||||||||| || ||||||||||
Sbjct 63 TCGTCGTCGTTCTCTTTTCGAAGATCTTCCTCTGCTTGCTCCGTCTGCTCTCGTTTAAAT 122
Query 116 GGCTAGAAAGAAGACTGAAACTGCAACTGAGCCCTCAAAGGAGATCAAAGCCAGAGGAAA 175
||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||
Sbjct 123 GGCTAGAAAGAAGACTGAAACTGCAACTGAGTCCTCAAAGGAGATCAAAGCGAAAGGAAA 182
Query 176 ATTAACCAGAGCCAAGAAGTGTATGAAAACAACTACTAAGAAAT-TCCATCAATCTGGAA 234
||| |||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||
Sbjct 183 ATTCACCAGAGCCAAGAAGTCTATGAAAACAACTACTAAG-AATATCCATCAATCTGGAA 241
Query 235 AACATAATA-TCGGAAGAGAGGAGAAAACCCCTTCTCAATGTTCAGCTAAGCCTCCATCT 293
||||||||| | |||| ||||||| || | | ||||||||||| ||||| |||||
Sbjct 242 AACATAATAGT-GGAAAAGAGGAG--AA----GTATAAATGTTCAGCTCAGCCTTCATCT 294
Query 294 TCTCAAGATCAAAGGCTGTTACATACCGATGACCAAACTCAAAAAGTACCTGTCCTTGAT 353
|||||||| ||||||||| ||||||| || ||||||||||||||||||||||||||||||
Sbjct 295 TCTCAAGAGCAAAGGCTGATACATACTGAAGACCAAACTCAAAAAGTACCTGTCCTTGAT 354
Query 354 CTCCATTCGAGCAAAGAGGTTCAACGTTCTGGAAAAATGAAGTTGCAGCTCTTTCCTTTG 413
||||||||||||| || |||| ||||||||||||||||||| |||||||||||||||||
Sbjct 355 ATCCATTCGAGCAAGGACGTTCCACGTTCTGGAAAAATGAAGCTGCAGCTCTTTCCTTTG 414
Query 414 GATGCTCATACCCGTGAAGGATTGGAAAAGGATGGCTTACACCCATACTTAGAACTCACT 473
|||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||||||
Sbjct 415 GATGCTCATACCCGTGAAGGATTGGAAAAGGACGGCTTTCACCCATACTTGGAGCTCACT 474
Query 474 CTTAGCTCACGGAAGAAGATTTCGTCAGTGCTTCAACGCATTCACAGTAAGTGGGGCAGC 533
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 475 CTTAGCTCACGGAAGAAGATTTCTTCAGTGCTTCAACGCATTCACAGTAAGTGGGGCAGC 534
Query 534 TCAGAGATTGCTCGGGGAGATCCCACGTTGTACCCTTATGATAAATCGGTACTTGCTTCT 593
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 535 TCAGAGATTGCTCGTGGAGATCCCACGTTGTACCCTTATGATACATCGGTACTTGCTTCT 594
Query 594 GGTCATAAATGGGTAGCAAACAGCAACATCACTACAGGCGATGTCTATGAAGCTATTGGA 653
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 595 GGTCATAAATGGGTAGCAAACAGCAACATCACTACAGGCAATGTCTATGAAGCTATTGGA 654
Query 654 GCTCCTTTTCTTTTCCGCTTAAGGTATGGGTGGTCCTTTGCGACTGAAAATAAAAACAAT 713
||||| ||| ||||||||||| ||||||||||||||| ||||||||||||||||| ||||
Sbjct 655 GCTCCATTTATTTTCCGCTTACGGTATGGGTGGTCCTCTGCGACTGAAAATAAAACCAAT 714
Query 714 GAACCGCCATCTCCTTCAACGCCAGGTACGGGAAAGCAGATGTTTGGTTCAGATAACCAA 773
|||||||||||||||||||| |||||||| |||| ||||||||| |||||||| |||| |
Sbjct 715 GAACCGCCATCTCCTTCAACTCCAGGTACAGGAACGCAGATGTTAGGTTCAGAGAACCCA 774
Query 774 TGGACAATGCTGTCCTCTCCAAATCAAGTGACTGACACACCTCCCTTGGAAAACTTACCG 833
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TTGACTATGCTGTCCTCTCCAAATCAAGTGACTGACACACCTCCCTTGGAAAACTTACCG 834
Query 834 CCTGATGGACAAGTTGAGTCAACGGAGAATAAGATAAACGATGGATCTGGTCCGACATTG 893
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 835 CATGATGGACAAGTTGAGTCAACGGAGAATAAGATAAACGATGGATCTGGCCCGACATTG 894
Query 894 CTTTTTTGGGATGATGGATTAACAAGCCTAAGTATTGGTGGCTTGCTTTCAGAAGTATCA 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 CTTTTTTGGGATGATGGATTAACAAGCCTAAGTATTGGTGGCTTGCTTTCAGAAGTATCA 954
Query 954 TTGAAGGGAAACTTTGGAAATCATTGTATAAATTCAAACGCAGGGAATGCAAACGCAACT 1013
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 955 TTGAAGGGAAACTTTGGAAATCATTGTAAAAATTCAAACGCAGGGAATGCAAATGCAACT 1014
Query 1014 CTCTGGGAAGACAATCTTACTAACATAAGCATTGGAGGTCTGTTTTCTGAGGCTTCTTTA 1073
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1015 CTCTGGGAAGACAATCTTACTAACATAAGCATTGGAGGTCTATTTTCTGAGGCTTCTTTA 1074
Query 1074 CAAGACAGATGTCATATGAACCATGAGC-AGGAACCAGCTCATAATAATAATGATGGTCA 1132
||||||||||| ||||||||| |||| | || |||||||||||||| | | |||
Sbjct 1075 CAAGACAGATGGCATATGAACAATGAACGAG-AACCAGCTCATAAT------G--G-TCA 1124
Query 1133 GACAAGTGGAAGTATAGGAGGCTTACTCTCCGAAGCATCT-TCTCTAGGAGAGGGAAGGT 1191
| | | ||||||||||||||||||||| || |||||||| | ||||||||| ||||||
Sbjct 1125 GTCTATTGGAAGTATAGGAGGCTTACTATCTGAAGCATCAAT-TCTAGGAGAAGGAAGGA 1183
Query 1192 TTAGTGACTGTAACAAAACATGGGAAACAAGGAGAGCTATCAAACAACCACCATTACATC 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1184 TTAGTGACTGTAACAAAACATGGGAAACAAGGAGAGCTATCAAACAACCACCATTACCTC 1243
Query 1252 TAATCTCTGATTCATTAGATGCTTTCCTCGTGAACCAAAC---T--C-G---AGCTCCTT 1302
|||||||||||||||||||||||||||||||||||||||| | | | ||||||||
Sbjct 1244 TAATCTCTGATTCATTAGATGCTTTCCTCGTGAACCAAACAGATAACCGTCGAGCTCCTT 1303
Query 1303 GCCCTGCTCCTCTTCCTGAGCCGTCACATTCGTCTATACTTGATGCAGACGATACATGCC 1362
||| ||| |||||||||||| ||||||||||||||||||| |||||||| ||||| ||||
Sbjct 1304 GCCATGCCCCTCTTCCTGAGTCGTCACATTCGTCTATACTCGATGCAGAAGATACGTGCC 1363
Query 1363 ATGCATTTTCATTTCGAAAGCGTACCACAATAACACCAAAGGTTCACGACCAG 1415
||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1364 ATGCATTTTCATTTCGAAAGCGTACCACAATAACACCAAAGGTTCACGATCAG 1416
Score = 477 bits (258), Expect = 1e-133
Identities = 280/291 (96%), Gaps = 0/291 (0%)
Strand=Plus/Plus
Query 1413 CAGGTAAGTGGAGAAGCTGAGAAGGAGCAACAGAAAGATGAATCGAACCCCGCAAAACCA 1472
|||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1462 CAGGTAAGTGGAGAAGTTGAGAAGGAGAAACAGATTGATGAATCGAACCCCGCAAAACCA 1521
Query 1473 TTACTGGGTTCCTCGGTGTTTAATCAAGACAGCAGCCTCGGATTATCAGGAATCAAGTGG 1532
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1522 TTATTGGGTTCCTCGGTGTTTAATCAAGACAGCAGCCTCGGATTATCAGGAATCAAGTGG 1581
Query 1533 GCTGAATCACGGGGACCATTTGATTTCGGCTTATCTTCATCGCGAAAGTTTGCTAATGGA 1592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1582 GCTGAATCACGGGGACCATTTGATTTCGGCTTATCTTCATCGCGAAAGTTTGCTAATGGA 1641
Query 1593 GACAGCGTAGGCTTTGGAGCTGTGGTAAAAAATTTGCCGGAAATGGAGCCTTTAGAAAAG 1652
||||||||| ||||||| ||||| |||||| |||||| ||||||||||||||||||||||
Sbjct 1642 GACAGCGTAAGCTTTGGTGCTGTAGTAAAAGATTTGCAGGAAATGGAGCCTTTAGAAAAG 1701
Query 1653 AAAATAAAGCTTCAAAAGCATTGAAACTCATGAACAATAATTATTCCACAG 1703
||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1702 AAAATAAAGCTTCAAAAGCATTGAAACTCATGAACAATAATCATTCCACAG 1752
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84186313965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5