BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg490718

Length=255
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G39404.1 | Symbols:  | other RNA | chr4:18329734-18330012 RE...   209    8e-54


> AT4G39404.1 | Symbols:  | other RNA | chr4:18329734-18330012 
REVERSE LENGTH=279
Length=279

 Score =  209 bits (113),  Expect = 8e-54
 Identities = 132/141 (94%), Gaps = 2/141 (1%)
 Strand=Plus/Plus

Query  116  CTTGCATGCACGGTGGCCCACGTGCTCCGTACCCACCACCGTCGCGCGTGTTCCGCTTGA  175
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  135  CTTGCATGCACGGTGGCCCACGTGCTCCGTACCCACCACCGTCGCGCGTGTTCCGCTTGA  194

Query  176  TAGCTACTCATCTCTTCTCTCTCATCCT-CTACAGTTTAAGCGCGTGTGTTTATACGTGC  234
            |||||||||||||||||| | || | || | ||||||| ||||||| |||||||||| ||
Sbjct  195  TAGCTACTCATCTCTTCTTT-TCCTTCTTCCACAGTTTCAGCGCGTTTGTTTATACGCGC  253

Query  235  CTATGTCAGTGTCTTGTCTAG  255
            |||||||||||||||||||||
Sbjct  254  CTATGTCAGTGTCTTGTCTAG  274


 Score =  137 bits (74),  Expect = 4e-32
 Identities = 83/87 (95%), Gaps = 1/87 (1%)
 Strand=Plus/Plus

Query  34   gagagaga-gagagagagagagagagGAAGAGGTCAATTCGGCGGAGACAGGAAAGGGAC  92
            |||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct  22   GAGAGAGATGAGAGAGGGAAAGAGAGGAAGAGGTCAATTCGGCGGAGACAGGAAAGGGAC  81

Query  93   GGCGGCCCACGGCGGAAGGAGACCTTG  119
            ||||||||||||||||||||||| |||
Sbjct  82   GGCGGCCCACGGCGGAAGGAGACGTTG  108



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11611850019


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5