BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490719
Length=952
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39410.1 | Symbols: WRKY13, ATWRKY13 | WRKY DNA-binding prot... 1478 0.0
> AT4G39410.1 | Symbols: WRKY13, ATWRKY13 | WRKY DNA-binding protein
13 | chr4:18332878-18334789 REVERSE LENGTH=974
Length=974
Score = 1478 bits (800), Expect = 0.0
Identities = 908/959 (95%), Gaps = 12/959 (1%)
Strand=Plus/Plus
Query 1 ATGGGTGCGATAAACCAAGGAATAAGCTTGTTTGATGAATCACAAACCATCATAAACCCT 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGGGTGCGATAAACCAAGGAATAAGCTTGTTTGATGAATCACAAACCGTCATAAACCCT 60
Query 61 ATTAATACTAACCATCTAGGTTTCTTCTTCTCTTTTCCTAGT--CA-CACCTTATCTTCA 117
|||||||| |||||||||||||||||||||||||| |||||| || |||||||||||||
Sbjct 61 ATTAATACCAACCATCTAGGTTTCTTCTTCTCTTTCCCTAGTCACAGCACCTTATCTTCA 120
Query 118 TCATCTTCGTCGCCTTCGTCTTCTCCTTCTTCTCTTGGGTCTCTATTTCTAGGTCAAAAC 177
|||||||||||| |||||||||||||||||||||||| ||||| |||||| ||||| |||
Sbjct 121 TCATCTTCGTCGTCTTCGTCTTCTCCTTCTTCTCTTGTGTCTCCATTTCTTGGTCATAAC 180
Query 178 TCCTTAAACTCCTTCCGTCATAATAACCCTTCCTCATTCATAAGTCATCCTCAAGATCCC 237
||| |||||||||||| |||||||||||| || |||||||||||||||||||||||| ||
Sbjct 181 TCCCTAAACTCCTTCCTTCATAATAACCCGTCTTCATTCATAAGTCATCCTCAAGATTCC 240
Query 238 ATCAATTTCATGGCGAATCTCCCCGAAACCCTAATCTCGTCTTTGTCCTCATCAAAGCAA 297
|||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATCAATCTCATGACCAATCTCCCCGAAACCCTAATCTCGTCTTTGTCCTCATCAAAGCAA 300
Query 298 AAGGACGATCATGATGGTTTTCTTAATCTCGATCATCATCGTCTTACCGGTGGTATATCA 357
| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 301 AGGGACGATCATGATGGTTTTCTTAATCTCGATCATCATCGTCTTACCGGTAGTATTTCA 360
Query 358 TCCCAAAGACCTTTGCCAAATCCATGGGCATGGAGTAGTCAAGCGGGATACGGAAGCAGC 417
||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 361 TCCCAAAGACCCCTGTCAAATCCATGGGCATGGAGTTGTCAAGCGGGATACGGAAGCAGC 420
Query 418 CAGAAAAACAACCACGGTAGCGAgattgatgttgatgataatgatgatgaggttggcgat 477
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CAGAAAAACAACCATGGAAGCGAGATTGATGTTGATGATAATGATGATGAGGTTGGCGAT 480
Query 478 ggtggtggtattaatgatgatgataatggtCATCATCATGATCATGATGATACTCCTC-G 536
|||||||| |||||||||||||||||||||| ||||| ||||| |||||||||| | |
Sbjct 481 GGTGGTGGCATTAATGATGATGATAATGGTCGTCATC---ATCATCATGATACTCC-CAG 536
Query 537 TCGTCATGATAAACATAACACGGCGTCGTTAGGTGTAGTTTCTTCTCTGAAGATGAAGAA 596
||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 537 TCGTCATGATAAACATAACACAGCGTCATTAGGCGTAGTTTCTTCTCTGAAGATGAAGAA 596
Query 597 GCTTAAGACAAGAAGAAAAGTGAGGGAGCCTCGGTTTTGCTTTAAGACTCTTAGCGAGGT 656
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 597 GCTTAAGACAAGAAGAAAAGTGAGGGAACCTCGGTTTTGCTTTAAGACACTTAGCGAGGT 656
Query 657 TGATGTCTTAGATGATGGATATAGATGGAGAAAGTATGGCCAGAAAGTTGTCAAAAACAC 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TGATGTCTTAGATGATGGATATAGATGGAGAAAGTATGGCCAGAAAGTTGTCAAAAACAC 716
Query 717 CCAACATCCCAGGAGCTATTACAGATGCACACAAGACAAGTGTAGAGTGAAGAAGAGAGT 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CCAACATCCCAGGAGCTATTACAGATGCACACAAGACAAGTGTAGAGTGAAGAAGAGAGT 776
Query 777 GGAGAGGTTAGCAGATGACCCAAGAATGGTAATCACTACTTACGAAGGAAGACACCTTCA 836
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GGAGAGATTAGCAGATGACCCAAGAATGGTAATCACTACTTACGAAGGAAGACACCTTCA 836
Query 837 ctctccttctaatcatctcgacgacgactctctctcctcctctcacc---actctcctct 893
||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||
Sbjct 837 CTCTCCTTCTAATCATCTCGACGACGACTCTCTCTCCACCTCTCACCTGCACCCTCCTCT 896
Query 894 ctccAACTTCTTCTGGTGATTTCAATTTGTTTTTCCTTTTGAATCAACCAATATTAAAA 952
|||||||||||||||||||||||||||||| ||||| || |||||||||||||| ||||
Sbjct 897 CTCCAACTTCTTCTGGTGATTTCAATTTGTATTTCCATT-GAATCAACCAATATCAAAA 954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46567054269
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5