BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490721
Length=1216
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39420.2 | Symbols: | unknown protein; INVOLVED IN: biologi... 1524 0.0
> AT4G39420.2 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: cellular_component unknown;
EXPRESSED IN: leaf; EXPRESSED DURING: LP.04 four leaves visible,
LP.02 two leaves visible; Has 20 Blast hits to 19 proteins
in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr4:18339287-18355093 FORWARD LENGTH=10189
Length=10189
Score = 1524 bits (825), Expect = 0.0
Identities = 973/1039 (94%), Gaps = 32/1039 (3%)
Strand=Plus/Plus
Query 1 ATGCTTGGTAATGTGAAGCTGGCAGAGGAAGGCATGCTGAGGGTGCTCTTTTCTGCTGTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2628 ATGCTTGGTAATGTGAAGCTGGCAGAGGAAGGCATGCTGAGGGTGCTCTTTTCTGCTGTG 2687
Query 61 TATCTATTGTCGCACAAGAATAGAAACGATAATCAGATTTCTGCTGTATCTAGGCTCCTT 120
||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 2688 TATCTATTGTCGCGCAAGGATAGAAACGATAATGAGATTTCTGCTGTATCTAGGCTCCTT 2747
Query 121 GGATTGGCTACAAGGTTTGCGACTGAGATGATTCGCATATATGGGTTACTTGAATATCAG 180
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 2748 GGATTGGCTACAATGTTTGCGACTGAGATGATTCGCAGATATGGGTTACTTGAATATCGG 2807
Query 181 AAAGATGGATACATGTTGGACAGCAAACCTAGGACACAAATACTTTCACTTCCACCAGTT 240
||||||| |||||||| |||||||||||||||||||| ||||||||||||||| |||||
Sbjct 2808 AAAGATGTTTACATGTTTGACAGCAAACCTAGGACACAGATACTTTCACTTCCAGCAGTT 2867
Query 241 TCACTTCATATTGATGTAATGGAAAATTCAAGGAGGTTGTCAGAGATGGGTTATCTTTTA 300
|||||| |||| |||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 2868 TCACTTAATATCGATGTAATGGAAAATTCAAGGAGGCTGTCAGAGATGGGTTATCTATTG 2927
Query 301 GAGATCACCCGAAATTTTCAATCCCGTATTACCAGAAAGTTTAAGAAGCTAGGAAAGGTA 360
|| |||||| | ||| |||||||||||||||||||||||||||||||||| ||| |
Sbjct 2928 GAAATCACCAGGAATATTCAATCCCGTATTACCAGAAAGTTTAAGAAGCT-----AGG-A 2981
Query 361 TTATATGATATTAATACTAATGGAAAGAATGAAAAGTCACTGAACCTGGTAGACCCAAAT 420
| | | ||||| ||||| |||||||||||||||||||||||||||
Sbjct 2982 --A-A-G--------------GGAAATAATGAGAAGTCACTGAACCTGGTAGACCCAAAT 3023
Query 421 TCTTTGCAGGATGATTCTCAGCTTGAAATTGTTCCAGATCCAGCATCTGCAGAGTCAAGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3024 TCTTTGCAGGATGATTCTCAGCTTGAAATTGTTCCAGATCCAGCATCTGCAGAGTCAAGA 3083
Query 481 CAACTTGACACGTCTTTATTCGATACCAATGGGGAGCTTGCTTTGACGCCTATGGGTATG 540
||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 3084 CAACTTGACACTTCTTTATTTGATACCAATGAGGAGCTTGCTTTGACGCCTATGGGTATG 3143
Query 541 ATGACAGCCAAAGCTGGTCAAATCATTGGCGAAAGAAGTTATGCATCTGGCCTTGTACCC 600
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 3144 ATGACAGC------TGGTCAAATCATTGACGAAAGAAGTTATGCATCTGGCCTTGTACCC 3197
Query 601 CAAGTGG-TAGTTGAAGAGAAGAAAGTTCTTCCTCTGGAAAATCCCAAGGAGATGATGGC 659
|||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3198 CAAG-GGATAGTTGAAGAAAAGAAAGTTCTTCCTCTGGAAAATCCCAAGGAGATGATGGC 3256
Query 660 TCGTTGGAAGGCTAACAATCTGGATTTGAAAACTGTGGTTAAGGATGCCTTGCTCTCTGG 719
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 3257 TCGTTGGAAGGCTAACAATTTGGATTTAAAAACTGTGGTTAAGGATGCCTTGCTCTCTGG 3316
Query 720 TCGACTCCCTTTAGCTGTTCTCCAATTGCATCTTCAACATTCAAAAGACGTGGTTGAAGA 779
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 3317 TCGACTCCCTTTAGCTGTTCTTCAATTGCATCTTCAACATTCTAAAGACGTGGTTGAAGA 3376
Query 780 TGGAGAGCATCATGATACATTTACTGAAGTTCGTGATATCGGAAGAGCTATTGCTTATGA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3377 TGGAGAGCATCATGATACATTTACTGAAGTTCGTGATATCGGAAGAGCTATTGCTTATGA 3436
Query 840 CCTATTTTTGAAGGGTGAACCTGGGGTTGCCATTGCGACTCTGCAAAGGCTCGGAGAGGA 899
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 3437 CCTATTTTTGAAGGGTGAACCTGGGGTTGCCATTGCCACTCTGCAAAGGCTCGGAGAGGA 3496
Query 900 TGTAGAAGCGTGTCTCAATCAGTTGGTATTTGGCACAGTGAGAAGATCTATTCGATATCA 959
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3497 TGTAGAAGCATGTCTCAATCAGTTGGTATTTGGCACAGTGAGAAGATCTCTTCGATATCA 3556
Query 960 AATTGCTGAAGAAATGAGAAAACTTGGTTTCTTAAGACCATATGAAGACAATGTACTGGA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3557 AATTGCTGAAGAAATGAGAAAACTTGGTTTCTTAAGACCATATGAAGACAATGTACTGGA 3616
Query 1020 GAGGATATCTCTTATCGAG 1038
|||||||||||||||||||
Sbjct 3617 GAGGATATCTCTTATCGAG 3635
Score = 292 bits (158), Expect = 4e-78
Identities = 166/170 (98%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 1037 AGCATCTCAAGCTTGATTGTGGTGAGGTTGATGGTGTTGTTCTAGGTTCTTGGACTAAAA 1096
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3760 AGCATCTCAAGATTGAGTGTGGTGAGGTTGATGGTGTTGTTCTAGGTTCTTGGACTAAAA 3819
Query 1097 TCAATGAGAGTGCATCTGAGCATGCGCCTGATGAAACCGATGCAGTTGCTGGCTACTGGG 1156
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 3820 TCAATGAGAGTGCATCTGAGCATGCACCTGATGAAACCGATGCAGTTGCTGGCTACTGGG 3879
Query 1157 CTGCAGCAGCCGTGTGGTCAAATGCTTGGGATCAGAGAACATTTGATCAT 1206
|||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 3880 CTGCAGCAGCTGTGTGGTCAAATGCTTGGGATCAGAGAACATTTGATCAT 3929
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59738648550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5