BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490724
Length=1158
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39470.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1744 0.0
> AT4G39470.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:18359373-18361170 REVERSE LENGTH=1393
Length=1393
Score = 1744 bits (944), Expect = 0.0
Identities = 1095/1167 (94%), Gaps = 14/1167 (1%)
Strand=Plus/Plus
Query 1 GCAAAATGTGTTCAATCGGAGT-ACTTGCTCTCTGTTCTCCGGCTAAATTTCATCATCGC 59
|||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1 GCAAGATGTGTTCAATCGGAGTAAC-TGCTCTCTGTTCTCCGGCTAAATTTCATCATCGC 59
Query 60 CGGGAACAATTGCTGATTTTTACTCCGACCCATTTGCGTTATCCAAATGGGTTTCAATTT 119
|||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 60 CGGGAACAATCACTGATTTTTACTCCGACCCATTTGCGTAATCCAAATGGGTTCCAATTT 119
Query 120 CGGTGGAGAAAGTCCCGACCTTTCG--CCCA-ATC-CG-TCAATTTCGCTC-CGTCCTTT 173
||||||||||||||||||||||||| |||| | | || ||| || | | | |
Sbjct 120 CGGTGGAGAAAGTCCCGACCTTTCGCTCCCAGA-CTCGCCCAA-CCCG-ACAATTTCGCT 176
Query 174 TCACAACTTCCTCTTATAGGCTCTTCGACGTCTCTTCTTTCTTCCAAGGATTTCGTTCAG 233
| | || ||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 177 CCGCCGCTCCCTCTCATACGCTCTTCGACGTCTCTTCTTTCTTCCAAGGATTTCGTTCAG 236
Query 234 ATTCTGGCGAGAAAAGCCGCGATTTTACTTGTTGGGTCGTTTGTCTTTCTAGGGTTCTGT 293
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 237 ATGCTGGCGAGAAAAGCCGCCATTTTACTTGTTGGGTCGTTTGTCTTTCTAGGGTTCTGC 296
Query 294 TCTTCGAAACCTGCTTTAGCGCTACCCACTGCAACTGTCGTCTCTCAGGCAGAGTTAGAG 353
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 297 TCTTCGAAACCTGCTTTAGCGCTACCCACTGCAACTGTAGTCTCCCAGGCAGAGTTAGAG 356
Query 354 GACGAGAAAATGTTCGAGAAGCTTCTGGAAAGTGAGCCAGAGAACATGGAGGCTATGAAG 413
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 357 GACGAGAAAATGTTCGAGAAGCTTCTGGAAAATGAGCCAGAGAACATGGAGGCTATGAAG 416
Query 414 GCTGTTGTGTATAAGAAGATGAGGAGAGGTAAAAATGAAGATGCTGTGAAATATGTGGAG 473
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 417 GCTGTTGTGTATAAGAAGATGAGGAGAGGGAAAAATGAAGATGCTGTGAAATATGTTGAG 476
Query 474 AAGCTGATGAAATTAGAGCCTCATGAAGTTGAATGGAAGCTTTTAGAAGCGCTTTGTTAT 533
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 477 AAGCTGATGAAATTAGAGCCTCATGAAGTTGAGTGGAAGCTTTTAGAAGCGCTTTGCTAT 536
Query 534 GAAACGATGGGAGAATTGAGCAAAGCCAAGAGATTGTATAAGGATATTCTCAAAGAACAA 593
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GAAACAATGGGGGAATTGAGCAAAGCCAAGAGATTGTATAAGGATATTCTCAAAGAACAA 596
Query 594 CCTCTGTTGATCAGAGCTTTGCACGGTCTTGCTATGGTAATGCATAAGACTCATGACACC 653
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CCTCTTTTGATCAGAGCTTTGCACGGTCTTGCTATGGTAATGCATAAGACTCATGACACC 656
Query 654 TCTGTCTTTGATATGCTCATGGAAGCTATGGAAGTTGCTCGACAAGGGAACCGAGTAACC 713
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 657 TCTGTCTTTGATATGCTCATTGAAGCTATGGAAGTTGCTCGACAAGGAAACCGAGTAACC 716
Query 714 GAGGAGAGAAACATTCAAGTCTTGATTGGTCAAATGCATATTGTGCAGGGTCAATTTGAA 773
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 717 GAGGAGAGAAACATACAAGTCTTGATTGGTCAAATGCATATTGTGGAGGGTCAATTTGAA 776
Query 774 GAAGGTCTAAAGATATTTCAACAGATGGTAAATGATAACCCTCGAGATTTTCGACCTTAT 833
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 777 GAAGGTCTAAAGATATTTCAACAGATGGTGAATGATAATCCTCGAGATTTTCGACCTTAC 836
Query 834 CTTTGCCAGGGCATAGTCTATAGCTTAATGGATAAAAAAGAGGAAGCAGCTCAACAGTTT 893
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 837 CTTTGCCAGGGCATAGTGTATAGCTTAATGGATAAAAAAGAGGAAGCAGCACAACAGTTT 896
Query 894 GAGAACTATTGGAGCCTTGTACCTGAAGAATTCCCACAAAAGGGATTTCTCGACGATGTT 953
|||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 897 GAGATCTATTGGAGTCTTGTACCTGGAGAATTCCCACAAAAGGGATTTCTCGACGATGTT 956
Query 954 GCCTTGGCTGCTCAAGCCAAATCCCGAGAACGACTTCAAAACACATTCAAAGCTAAATTT 1013
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 957 GCCTTGGCTGCTCAAGCAAAATCCCGAGAACGGCTTCAAAACACATTCAAAGCTAAATTT 1016
Query 1014 ACTCAGGGGAAATAATTGAT-GCTTCATCATCAGTTGGAAGTTTTCTTCTTGAGGTTTGC 1072
|||||||||| |||||||| ||||||||| ||||| ||||||||||||||||||||||
Sbjct 1017 ACTCAGGGGAGATAATTGAAAGCTTCATCAGCAGTTCAAAGTTTTCTTCTTGAGGTTTGC 1076
Query 1073 AGTGCC-ACTCATGTAATCACACTTTTGGTCATGTTGCAGCTACATGACATATGGTTATA 1131
|||||| ||||||||||||||| ||||||||||||| ||| ||||||||||||| |||||
Sbjct 1077 AGTGCCCACTCATGTAATCACA-TTTTGGTCATGTTACAGTTACATGACATATGTTTATA 1135
Query 1132 AAGAATACCAGATATGAAATGTTAACA 1158
||||||| ||| |||||||||||||||
Sbjct 1136 AAGAATATCAGGTATGAAATGTTAACA 1162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56827016940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5