BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490730
Length=1691
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26870.1 | Symbols: | Class II aminoacyl-tRNA and biotin sy... 2708 0.0
AT4G31180.1 | Symbols: | Class II aminoacyl-tRNA and biotin sy... 1134 0.0
> AT4G26870.1 | Symbols: | Class II aminoacyl-tRNA and biotin
synthetases superfamily protein | chr4:13505331-13507870 FORWARD
LENGTH=1900
Length=1900
Score = 2708 bits (1466), Expect = 0.0
Identities = 1580/1630 (97%), Gaps = 27/1630 (2%)
Strand=Plus/Plus
Query 86 CATCATCTCTTTCTCT---GGAGGAGGATGAATCGTTTTCCAGCAACTACGGTGACGTGA 142
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 169 CATCATCTCTTTCTCTGGAGGAGGAGGATGAATCGTGTTCCAGCAACTACGGTGACGTGA 228
Query 143 CTACTAACGAGTTGCAGTCGGCTGTTGAGGGAAAAGAGCTGACTGATGTGAGCAACTTGG 202
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 229 CTACTAACGAGTTGCAGTCGGCTGTTGAGGGAAAAGAGCTCACTGATGTGAGCAACTTGG 288
Query 203 TTGAAGAGATTGTGGGGTCAGAGGTTTCGATCAGAGGTCGAGTGCACAAGAATCGCTTAG 262
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 289 TTGAAGAGATTGTGGGGTCAGAGGTTTCGATCAGAGGTCGACTGCACAAGAATCGCTTAG 348
Query 263 TCGGTACCAAATTGTTTGTGATCTTGAGGGAAAGTGGATTCACGGTTCAATGCGTGGTGG 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 TCGGTACCAAATTGTTTGTGATCTTGAGGGAAAGTGGATTCACGGTTCAATGCGTGGTGG 408
Query 323 AGGAGACCAGAGTTGGTGCAAACATGATTAAATTTGTCAAGCAGCTGAGTCGTGAATCTG 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 AGGAGACCAGAGTTGGTGCAAACATGATTAAATTTGTCAAGCAGCTGAGTCGTGAATCTG 468
Query 383 TTGTTGAGCTTATCGGTGTCGTCTCTCACCCTAAGAAGCCTCTCACAGGAACCA--C--C 438
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 469 TTGTTGAGCTTATCGGTGTCGTCTCTCACCCTAAGAAGCCTCTCACAGGAACCACCCAGC 528
Query 439 -----------CA-G-CAGAAAAATGTACTGCCTC-GCAGATCCTTGCTAAATTTACCAC 484
|| | ||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 529 AGGTTGAAATACATGTCAGAAAAATGTACTGCCTCAGCAGATCCTTGCCAAATTTACCAC 588
Query 485 TTGTTGTGGAGGATGCTGCTCGTAGTGAATCAGATATTGAAAAATCTGGCAAGGATGGCA 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 TTGTTGTGGAGGATGCTGCTCGTAGTGAATCAGATATTGAAAAATCTGGCAAGGATGGCA 648
Query 545 AACCAGCTGCTCGTGTCCTTCAGGACACACGTTTGAATAATAGGGTTCTTGACATCAGAA 604
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 AACAAGCTGCTCGTGTCCTTCAGGACACACGTTTGAATAATAGGGTTCTTGACATCAGAA 708
Query 605 CACCGGCTAATCAAGCCATCTTCCGTATTCAGTGCCAAGTCCAAATTGATATT-A-TGAT 662
|||||||||||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct 709 CACCGGCTAATCAAGCCATCTTCCGTATTCAGTGCCAAGTCCAAATTG-CGTTCAGAGAA 767
Query 663 TTGTCATTATCCTAATAGGG-TTCTTGAAATCCACACACCGAAATTGATGGCTGGCAGTA 721
| | | |||| || ||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 768 TACTTACAATCC-AA-GGGGTTTCTTGAAATCCACACACCGAAATTGATCGCTGGCAGTA 825
Query 722 GTGAAGGAGGTTCCGCTGTATTTAGGTTGGACTACAAAGGGCAGCCTGCTTGTCTGGCTC 781
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 826 GTGAAGGAGGTTCTGCTGTGTTTAGGTTGGACTACAAAGGGCAGCCTGCTTGTCTGGCTC 885
Query 782 AGTCTCCTCAGCTTCATAAGCAGATGGCGATATGTGGTGACATGCGACGCGTCTTTGAGG 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 AGTCTCCTCAGCTTCATAAGCAGATGGCGATATGTGGTGACATGCGACGCGTCTTTGAGG 945
Query 842 TTGGTCCTGTTTTCAGAGCTGAAGACTCCTTCACTCATAGACACCTGTGTGAATTCGTTG 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 TTGGTCCTGTTTTCAGAGCTGAAGACTCCTTCACTCATAGACACCTGTGTGAATTCGTTG 1005
Query 902 GTCTTGATGTGGAGATGGAGATTCGAATGCACTACTCTGAGATAATGGATCTTGTGGGGG 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 GTCTTGATGTGGAGATGGAGATTCGAATGCACTACTCTGAGATAATGGATCTTGTGGGGG 1065
Query 962 AGTTGTTTCCGTTCATATTCACAAAAATAGAAGAAAGGTGCCCAAAGGAACTTGAATCTG 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 AGTTGTTTCCGTTCATATTCACAAAAATAGAAGAAAGGTGCCCAAAGGAACTTGAATCTG 1125
Query 1022 TCAGAAAGCAATACCCTTTTCAATCTTTGAAGTTTCTTCCGCAAACATTGAGGCTAACCT 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 TCAGAAAGCAATACCCTTTTCAATCTTTGAAGTTTCTTCCGCAAACATTGAGGCTAACCT 1185
Query 1082 TTGCAGAAGGGATTCAAATGCTTAAGGAAGCTGGCGAGGAGGTTGATCCTCTTGGTGATC 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 TTGCAGAAGGGATTCAAATGCTTAAGGAAGCTGGCGAGGAGGTTGATCCTCTTGGTGATC 1245
Query 1142 TAAATACAGAATCTGAGAGGAAACTTGGCCAGCTTGTTCTGGAAAAGTACAAGACGGAGT 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 TAAATACAGAATCTGAGAGGAAACTTGGCCAGCTTGTTCTGGAAAAGTACAAGACGGAGT 1305
Query 1202 TCTACATGCTGCATCGCTATCCATCGGCTGTCAGACCGTTCTACACTATGCCCTATGAAA 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 TCTACATGCTGCATCGCTATCCATCGGCTGTCAGACCGTTCTACACTATGCCCTATGAAA 1365
Query 1262 ATGATTCTAACTACAGCAACTCGTTCGATGTCTTCATCAGAGGAGAGGAGATCATGTCAG 1321
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1366 ATGATTCTAACTACAGCAACTCTTTCGATGTCTTCATCAGAGGAGAGGAGATCATGTCAG 1425
Query 1322 GAGCTCAACGTATCCATGACCCAGAACTCTTGGAGAAGCGCGCAAGAGAATGCTGCATTG 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1426 GAGCTCAACGTATCCATGACCCAGAACTCTTGGAGAAGCGCGCAAGAGAATGCGGCATTG 1485
Query 1382 ATGTCAAGACAATATCCACGTACATTGATGCATTCAGGTACGGTGCACCACCTCACGGTG 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 ATGTCAAGACAATATCCACGTACATTGATGCATTCAGGTACGGTGCACCACCTCACGGTG 1545
Query 1442 GATTCGGAGTGGGGCTGGAGCGTGTGGTAATGCTCTTATGTGCCCTCAATAACATCCGCA 1501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 GATTCGGAGTGGGGCTGGAGCGTGTGGTAATGCTCTTATGTGCCCTCAATAACATCCGCA 1605
Query 1502 AAACTTCGCTATTCCCTCGTGACTCTCAAAGGCTCACTCCCTAATATCATTGCTCTTCCC 1561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1606 AAACTTCGCTATTCCCTCGTGACTCTCAAAGGCTCACTCCCTAATATCATTGCTCTTCCC 1665
Query 1562 TGGCGACTCTCAAAGGCTCGCTCCCTTAATATCTATCTTTGATAATTGTCCCCGCTCCCG 1621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1666 TGGCGACTCTCAAAGGCTCGCTCCCTTAATATCTATCTTTGATAATTGTCCCCGCTCCCG 1725
Query 1622 ATTTTTAAGTTATTTTATTGGTGCAGTTCGTTAGGTGTTTAGTTATCTTTAAACTATTTA 1681
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1726 ATTTCTAAGTTATTTTTTTGGTGCAGTTCGTTAGGTGTTTAGTTATCTTTAAACTATGTA 1785
Query 1682 TGTGTTGTAA 1691
||||||||||
Sbjct 1786 TGTGTTGTAA 1795
Score = 99.0 bits (53), Expect = 1e-19
Identities = 61/65 (94%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 20 ctGGAGAAGAGATGGTGGGATCAGAGGTTTTGGAGGAATCTGGAGAGAAGATGAGCAAGA 79
||||||||||||||||||||||||||||||||||||||| |||||| || || |||||||
Sbjct 40 CTGGAGAAGAGATGGTGGGATCAGAGGTTTTGGAGGAATGTGGAGAAAAAATAAGCAAGA 99
Query 80 AAGAG 84
|||||
Sbjct 100 AAGAG 104
> AT4G31180.1 | Symbols: | Class II aminoacyl-tRNA and biotin
synthetases superfamily protein | chr4:15155879-15159589 FORWARD
LENGTH=2126
Length=2126
Score = 1134 bits (614), Expect = 0.0
Identities = 1182/1445 (82%), Gaps = 84/1445 (6%)
Strand=Plus/Plus
Query 162 GGCTGTTGAGGGAAAAGAGCT-GACTGATGTGAGCAACTTGGTTGAAGAGATTG-TGGGG 219
||||||||||||||| ||| | ||| ||||||||| | ||||| ||||||| || |||
Sbjct 486 GGCTGTTGAGGGAAAGGAG-TGGACCGATGTGAGCGATTTGGTGGAAGAGA-TGTTGGAA 543
Query 220 TCAGAGGTTTC-GATCAGAGGTCGAGTGCACAAGAATCG-CTTA-GTCGGTACCAAATT- 275
||||||| ||| ||||||||| |||||||||| |||||| | | ||| || ||||||
Sbjct 544 TCAGAGG-TTCTGATCAGAGGCCGAGTGCACACGAATCGTCCAACGTC--TAACAAATTG 600
Query 276 --GTTTGTGATCTTGAGGGAAAGTGGATTC-ACGGTTCAATGCGTGG-T-G-------GA 323
||||||| |||||||||| || ||| || || ||||| ||||||| | | ||
Sbjct 601 GGGTTTGTGGTCTTGAGGGAGAGCGGA-TCAACTGTTCAGTGCGTGGTTAGCCAATCAGA 659
Query 324 GGAGACCAGAGTTGGTGCAAACATGATTAAATTTGTCAAGCAGCTGAGTCGTGAAT-CTG 382
| |||||| ||| ||||| |||||| |||||| |||||||||||||||| |||| ||
Sbjct 660 GAAGACCAAAGTAGGTGCCAACATGGTTAAATACCTCAAGCAGCTGAGTCGCGAATCCT- 718
Query 383 TTGTTGA-GCTTATCGGTGTCGTCTCTCACCCTAAGAAGCCTCTCACAGGAACCAC-C-- 438
|||| || | |||||||||||||| ||| ||| ||| |||| || || ||||| || |
Sbjct 719 TTGTCGATG-TTATCGGTGTCGTCACTCTCCCCAAGGAGCCGCTGACGGGAACTACGCAG 777
Query 439 CA----G-----C-A--GA-AAAA-TGTACTGCCTC-GCAGATCCTT-GCTAAATTTACC 482
|| | | | || |||| |||||||| || || |||||| || ||| |||||
Sbjct 778 CAGGTTGAAATTCAAGTGAGAAAAGTGTACTGCATCAACAAATCCTTGGCCAAA-TTACC 836
Query 483 ACTT-GTTGTGGAGGATGCTGCTCGTAGTGAATCAGATATTGAAAAATCT-GGCAAGGA- 539
|||| | |||||||||||||||||| |||||| ||||||| ||| |||| | | ||
Sbjct 837 ACTTAG-TGTGGAGGATGCTGCTCGGAGTGAAGCAGATATCGAAGCATCTCTTC-A-GAC 893
Query 540 TGGCA-AACCAGCTGCTCGTGTCCTTCAGGACACACGTTTGAA-TAATAGGGTTCTTGAC 597
| || ||||||||||||||| |||||| ||||||||||| | ||||||| || |||
Sbjct 894 T-CCATCTCCAGCTGCTCGTGTCAATCAGGATACACGTTTGAACT-ATAGGGTGCTCGAC 951
Query 598 ATCAGAACACCGGCTAATCAAGCCATCTTCC-GTATTCAGTGCCAAGTCCAAAT-TGATA 655
|||||||||||||||||||||||||||||| | |||||| | |||| | ||| ||
Sbjct 952 CTCAGAACACCGGCTAATCAAGCCATCTTCCAG-CTTCAGTACGAAGT-CGAATATG-CC 1008
Query 656 TT-A-TGATTTGTCATTATCCTAATAGGGTTCTTGAAATCCACACACCGAAATTGATGGC 713
|| | || | | || ||| | || ||| |||||||||||| ||| |||||||
Sbjct 1009 TTCAGAGAAAAATTACGAT-TTAAGAATTTTGTTGGAATCCACACACCAAAACTGATGGC 1067
Query 714 TGGCAGTAGTGAAGGAGGTTCCGCTGTATTTAGGTTGGACTACAAAGGGCAGCCTGCTTG 773
||| ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 1068 TGGTAGTAGTGAAGGAGGTTCTGCTGTATTTAGGTTGGAATACAAAGGGCAACCTGCTTG 1127
Query 774 TCTGGCTCAGTCTCCTCAGCTTCATAAGCAGATGGCGATATGTGGTGACATGCGACGCGT 833
||| ||||||||||||||||| || ||||| ||||| |||||||||||| ||||||| ||
Sbjct 1128 TCTAGCTCAGTCTCCTCAGCTCCACAAGCAAATGGCAATATGTGGTGACTTGCGACGTGT 1187
Query 834 CTTTGAGGTTGGTCCTGTTTTCAGAGCTGAAGACTCCTTCACTCATAGACACCTGTGTGA 893
||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1188 CTTTGAGGTAGGTCCTGTTTTCAGGGCCGAAGACTCCTTCACTCATAGACACCTGTGTGA 1247
Query 894 ATTCGTTGGTCTTGATGTGGAGATGGAGATTCG-AATGCACTACTCTGAGATAATGGATC 952
||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 1248 ATTCGTTGGTCTTGATGTGGAGATGGAGATTCGGAAA-CACTATTCTGAGATAATGGATC 1306
Query 953 TTGTGGGGGAGTTGTTTCCGTTCATATTCACAAAAATAGAA-GAAAGGTGCCCAAAGGAA 1011
|||||| ||||| ||| ||| |||||||| | | ||| || |||||| ||| |||
Sbjct 1307 TTGTGGACGAGTTATTTGTGTTTATATTCACTAGTTT-GAATGAGAGGTGCAAAAAAGAA 1365
Query 1012 CTTG-AATCTGTCAGAAAGCAATACCCTTTTCAATCTTTGAAGTTTCTTCCGCAAACATT 1070
|| | || |||| ||||||||||||| ||| || ||||||||||||| || |||||||
Sbjct 1366 CT-GCAAGCTGTTGGAAAGCAATACCCATTTGAACCTTTGAAGTTTCTACCAAAAACATT 1424
Query 1071 GAGGCTAACCTTTGCAGAAGGGATTCAAATGCTTAAGGAAGCTGGCGAGGAGGTTGATCC 1130
|||| |||| |||| ||||||| |||||||||||||||||||||| | ||||||||||||
Sbjct 1425 GAGGTTAACGTTTGAAGAAGGGGTTCAAATGCTTAAGGAAGCTGGTGTGGAGGTTGATCC 1484
Query 1131 TCTTGGTGATCTAAATACAGAATCTGAGAGGAAACTTGGCCAGCTTGT-TCTGGAAAAGT 1189
|||||| |||||||| || ||||||||||| ||||| ||||||||||| | |||||||||
Sbjct 1485 TCTTGGCGATCTAAACACTGAATCTGAGAGAAAACTAGGCCAGCTTGTAT-TGGAAAAGT 1543
Query 1190 ACAAGACGGAGTTCTACATGCTGCATCGCTATCC-ATCGGCTGTCAGACCGTTCTACACT 1248
|||| || |||||||| || |||||||| ||||| | ||| || || || ||||||||
Sbjct 1544 ACAACACTGAGTTCTATATTCTGCATCGGTATCCTAA-GGCAGTTAGGCCTTTCTACACA 1602
Query 1249 ATGCCCTATGAAAATGATTCTAACTACAGCAACTCGTTCGATGTCTTCATCAGAGGAGAG 1308
||| | | || || || || ||||||||||| || ||||||||||||||||| |||
Sbjct 1603 ATGACTTGTGCCGATAATCCTCTTTACAGCAACTCTTTTGATGTCTTCATCAGAGGTGAG 1662
Query 1309 GAGATCATGTCAGGAGCTCAACGTATCCATGA-CCCAGAACTCTTGGAG-AAGCGCGCAA 1366
|||||||| ||||||||||||||| ||||| | ||||||| |||||||| || || |||
Sbjct 1663 GAGATCATATCAGGAGCTCAACGTGTCCAT-ATCCCAGAAGTCTTGGAGCAA-CGTGCAG 1720
Query 1367 GAGAATGCTG-CATTGATGTCAAGACAATATCCACGTACATTGATGCATTCAGGTACGGT 1425
||||||| || |||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1721 GAGAATG-TGGCATTGATGTCAAGACAATATCCACATACATTGATTCATTCAGGTACGGT 1779
Query 1426 GCACCACCT-CACGGTGGATTCGGAGTGGGGCTGGAGCGTGTGGTAATGCTCTTATGTGC 1484
|| || | | ||||||||||| ||||||||||||||||| ||||| ||||| || |||||
Sbjct 1780 GCGCCTC-TACACGGTGGATTTGGAGTGGGGCTGGAGCGAGTGGTCATGCTTTTCTGTGC 1838
Query 1485 CCTCAATAACATCCGCAAAACTTCGCTATTCCCTCGTGACTCTCAAAGGCTCACTCCCTA 1544
|| || ||||| || ||||| || || |||||||||||| |||||||||| | |||||
Sbjct 1839 ACTGAACAACATTCGGAAAACATCCCTCTTCCCTCGTGACCCTCAAAGGCTTTCACCCTA 1898
Query 1545 ATATC 1549
|||||
Sbjct 1899 ATATC 1903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83583907425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5