BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490732
Length=1079
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39540.3 | Symbols: SK2 | shikimate kinase 2 | chr4:18378225... 1467 0.0
> AT4G39540.3 | Symbols: SK2 | shikimate kinase 2 | chr4:18378225-18380417
FORWARD LENGTH=1192
Length=1192
Score = 1467 bits (794), Expect = 0.0
Identities = 999/1092 (91%), Gaps = 38/1092 (3%)
Strand=Plus/Plus
Query 1 GAGAGAAAGGGAGTCTCTGCCTCTCAAGCTCCGCCGTC-GGGAAAAAGAGAATATGGAAG 59
|||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 52 GAGAGAAA--GAGTCTCTGCCTCTCAAGCTCCGCCGTCGGGGAAAAA-AGAATATGGAAG 108
Query 60 CAGCTACTATTCAGAGGTTTCAGTACTCATCATGGACTGATTTGAGAACTTTTGAAGGGA 119
|||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 109 CAGCTACTGTTCAGAGGTTTCAGTACTCATCATGGAATGATTTGAGAAATTTTGAAGGGA 168
Query 120 AGCCTAATGGTTATTTGAGG--T-ATACACAGCGAATTAAGGAAGATAAAAGGTTTAGAG 176
||||| ||||| | ||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 169 AGCCTCGTGGTTCTCTGAGGTATAATACACAGCGAATTAAGGAAGATAAAAGGTTTAGAG 228
Query 177 TTGTTGCTTTAGCTCTTGACAAAAGAAGGGATCATCGACAAAGATCAGTTTCTGAAAAGA 236
||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 229 TTGTTGCTTTAACTCTTGACAAAAGAAGGGATCATCGACTTAGATCAGTTTCTGATAAGA 288
Query 237 ACTCCTCAGCATTGTTGGATACTGGAAGTCTTCTTCATTCTCCATTTGATGAAGAACAAC 296
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 289 ACTCCTCAGCATTGTTGGAAACTGGAAGTCTTCTTCATTCTCCATTTGATGAAGAACAAC 348
Query 297 AGCTTTTGCAGAAAAAAGCTGAAGAGGTGAAACCATATTTAAATGGACGATCTATGTA-- 354
|| ||||| ||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 349 AGATTTTGAAGAAAAAAGCTGAAGAGGTTAAACCGTATTTAAATGGACGATCGATGTATC 408
Query 355 ---T---C----T--T-GT---TG-G--A---ATGATGGGTTCCGGGAAGACGACAGTAG 392
| | | | || || | | ||||||||||||||||| ||||| ||||
Sbjct 409 TTTTGAACAGTTTCCTCGTGAATGCGTTAGGTATGATGGGTTCCGGGAAAACGACTGTAG 468
Query 393 GGAAGATAATGGCAAGATCACTTGGTTATACATTCTTTGATTGTGACACTTTGATCGAGC 452
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 469 GGAAGATTATGGCAAGATCGCTTGGTTATACATTCTTTGATTGTGACACTTTGATCGAGC 528
Query 453 AGGCTATGAATGGAACTTCTGTAGCTGAGATATTTGAGCATTTCGGCGAGAGTGTCTTCA 512
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 529 AGGCTATGAAGGGAACTTCTGTAGCTGAGATATTTGAGCATTTCGGTGAGAGTGTCTTCA 588
Query 513 GAGAAAAAGAGACCGAAGCTTTAAAGAAACTCTCTTTGATGTACAACCAAGTTGTTGTTT 572
||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 589 GAGAAAAAGAGACTGAAGCGTTAAAGAAACTCTCTTTGATGTACCACCAAGTTGTTGTTT 648
Query 573 CAACCGGGGGAGGGGCAGTTATACGACCCATCAATTGGAAGTACATGCATAAAGGTATCA 632
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 649 CAACCGGGGGAGGGGCAGTTATAAGACCCATCAATTGGAAGTACATGCATAAAGGTATTA 708
Query 633 GCATTTGGCTTGATGTACCTCTAGAAGCGTTGGCGCATAGAATCGCTGCTGTAGGAACTG 692
| |||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 709 GTATTTGGCTTGATGTACCTCTAGAAGCCTTAGCGCATAGAATAGCTGCTGTAGGAACTG 768
Query 693 GTTCAAGACCATTGTTACAAGATGATGAGTCAGGGGACACATACACAGCGGCTTTAAACC 752
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 769 GTTCAAGACCATTGCTACATGATGATGAGTCAGGGGACACATACACAGCGGCTTTAAACC 828
Query 753 GTCTTTCAATGATTTGGGATGCACGTGGTGAAGCATACACTAACGCCAGCGCAAGAGTTT 812
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 829 GTCTTTCAACGATTTGGGATGCACGTGGTGAAGCATACACTAAAGCCAGCGCAAGAGTTT 888
Query 813 CCTTGGAGAATATTACATTAAAGCTTGGTTATAGAAGTGTCTCAGATCTTACACCAACTG 872
|||||||||||||||| || ||||| |||||||||||||||||||||||||||||| |||
Sbjct 889 CCTTGGAGAATATTACTTTGAAGCTCGGTTATAGAAGTGTCTCAGATCTTACACCAGCTG 948
Query 873 AAATCGCCATTGAGGCCTTTGAGCAAGTTCGGAGCTATTTAGAGAAAGAAGACGGTATGG 932
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 949 AAATCGCCATTGAGGCCTTTGAGCAAGTTCAGAGCTATTTAGAGAAAGAAGATGGTATGG 1008
Query 933 CCAGACCAGATGG-CTTCTAGTTCCAGAATGATATGTTTCCGTGCAACATCTCATGAATT 991
| ||||||||||| || |||||||||||| | ||||||||| |||||||||||||||||
Sbjct 1009 CTAGACCAGATGGACT-CTAGTTCCAGAAAGTTATGTTTCCCCGCAACATCTCATGAATT 1067
Query 992 TACGCGT--TTTTGAGTATTGTGTATAGAGATGAATAATACTCTGTTTCATCACATTGTC 1049
| || | |||||| | |||| |||| | |||||||||||||||||| | |||||||||
Sbjct 1068 TGTGCCTAGTTTTGAATGTTGTATATA-A-ATGAATAATACTCTGTTTGAGCACATTGTC 1125
Query 1050 TTCTTTTCGAAA 1061
|||||||| |||
Sbjct 1126 TTCTTTTC-AAA 1136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52861173885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5