BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490734
Length=1286
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39550.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1688 0.0
> AT4G39550.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:18380526-18381905 REVERSE LENGTH=1380
Length=1380
Score = 1688 bits (914), Expect = 0.0
Identities = 1190/1316 (90%), Gaps = 48/1316 (4%)
Strand=Plus/Plus
Query 1 GCTGTCGGAAAAGAATCCAGAGGTTG-TTGA--TCAATA-TCGCCAATGTCGTCCCCAGA 56
|||||||||||||||| ||||||||| | || | ||| ||||||||||||||||| |
Sbjct 1 GCTGTCGGAAAAGAATACAGAGGTTGATCGACGCCTATACTCGCCAATGTCGTCCCC-G- 58
Query 57 GAAGAAGAGGAAGAGGAGGAAGACGACGAAGAAGCCATCGCCGACGCCGCAATCGACGAC 116
| | || | | | | |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 59 G-A-AA-A-G-A-A-GAGGAAGACGACGAAGAAGCCATCGCCGACGCCGCAATCGACAAC 111
Query 117 CCCAAATCCTTCACTTCCCGATGATTTGGTATTGAGCTGCTTAGCACGCGTCTCGAGATT 176
|||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||
Sbjct 112 CCCAAATCCTTCACTTCCAGATGATTTAGTAGTGAGCTGCTTAGCACGCGTCTCGAGATT 171
Query 177 GGACTACCCAACTCTCTCCCTCGTCTCCAAGAGTTTCCGCTCGCTCG-TTGCTTCACCGG 235
| | ||||||||||||||| | ||||||||||| |||||||| || | |||||||||| |
Sbjct 172 GTATTACCCAACTCTCTCCTTAGTCTCCAAGAGCTTCCGCTC-CTTGATTGCTTCACCAG 230
Query 236 AGCTTTACAAGATCCGGTCCTCT-TTAGGCCGCACCGAGAGTTGTCTCTATGTGTGTTTG 294
| || ||||||| ||| | |||| ||||| ||||| |||||||||||||||||||||||
Sbjct 231 ATCTCTACAAGACCCGAT-CTCTGTTAGGTCGCACTGAGAGTTGTCTCTATGTGTGTTTA 289
Query 295 CAGGAGAAAGATTCTGACCCTAACCCTCGTTGGTTCACTCTCTGCCGGAAACCTAATCGA 354
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 290 CAGGAGAAAGATTCTGACCCTAACCCTCGTTGGTTCACTCTCTGTCTGAAACCTAATCGA 349
Query 355 ACTCTAACCAATGACATCACT--------G-AGAAGAAG-AG--GAAGAAG-A-A-GTCA 399
|||||||||||||| |||||| | |||||||| || ||||||| | | ||||
Sbjct 350 ACTCTAACCAATGATATCACTGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGTCA 409
Query 400 AGTGGGTATGCTT-TGGCTGCAATCCCAGTTCTCCATTCTCGTCCTGCGCACTGGTCTGG 458
|||||||||| || ||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 410 AGTGGGTATG-TTCTGGCTGCAATCCCAGTTCTCCATTCTCGTCCTGCGTACTGGTCGGG 468
Query 459 TCTCGTTGCCGTTGGTTCTAATATCTACAACATTGGCGGACCCACCGACAAAGAACACTC 518
|||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||
Sbjct 469 TCTCGTTGCCGTTGGTTCTAATATCTACAACATTGGAGGACCCATCGACAAAGCACACTC 528
Query 519 GTCTATCGTCTCGATCCTGGACTGCCAGTCTCACACGTGGGGCGAGGCTCCAAGCATGAG 578
||||||||||||| |||||||||| ||||||||||| ||| ||||| |||| |||||||
Sbjct 529 GTCTATCGTCTCGGTCCTGGACTGTCAGTCTCACACATGGCACGAGGGTCCAGGCATGAG 588
Query 579 AGTAGAGCGGAGGTATCCGGCGGCCAATGTTCTTGATGGAAAGATATATGTAACAGGAGG 638
|||||||||||| ||||||||||| |||||| |||| |||||||||||||||||||||||
Sbjct 589 AGTAGAGCGGAGATATCCGGCGGCTAATGTTGTTGAAGGAAAGATATATGTAACAGGAGG 648
Query 639 CTGCAAAGACTGCAGCAATCCCTCCAACTGGATGGAGGTTTTCGATCCTAAAACCCAAAC 698
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 649 CTGCAAAGACTGCAGCAATTCCTCCAACTGGATGGAGGTTTTCGATCCTAGAACCCAAAC 708
Query 699 TTGGGAGCCTGTCTCCAGCCCTGGCGCGGAGATTGGTGGTTGTAGCATACATAAAAGCGC 758
||||||| ||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 709 TTGGGAGTCTGTCTCGAGCCCTGGCGCAGAGATTGGAGGTTGTAGCATACATAAAAGCGC 768
Query 759 AGTGGTTGAAGGAGAAATCTTCTTTGCAAACTCTAAAGGTTTGATTTACAAACCCAAGGA 818
|||||| |||||||||||||| ||||||||||| | |||||||||||||||||||||||
Sbjct 769 AGTGGTGGAAGGAGAAATCTTGATTGCAAACTCTCATGGTTTGATTTACAAACCCAAGGA 828
Query 819 AGGTAGATGGAAAAGGATGGAATGGGACATGGATATAGGTTGGGTATGGTATTCTTATTG 878
|||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 829 AGGTAGGTGGGAAAGGATGAAATGGGACATGGATATAGGTTGGGTATGGTATTCTTATTG 888
Query 879 CGTTGTTGAGGATGTGCTTTACTATTATTACAAGGGAGAGTTCAAATGGTATGACACTAC 938
|||||||||| | |||||||||||||| || ||||||| |||||||||||||||||||
Sbjct 889 CGTTGTTGAGAACGTGCTTTACTATTACTATAAGGGAGTCTTCAAATGGTATGACACTAT 948
Query 939 GGCAAGACTCTGGAGGAATTTGAAGGGTGTGAAAGGACTGCCCAGGTTTGCCAGATGTGG 998
|||||||||||||||| || | ||||||||||||||||| ||||||||||||||||||||
Sbjct 949 GGCAAGACTCTGGAGGGATCTCAAGGGTGTGAAAGGACTCCCCAGGTTTGCCAGATGTGG 1008
Query 999 TGGAAAGATGGTGGATTATGGTGGAAAGATGGCGGTTTTCTGGGACAAGATTGTGACTTC 1058
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 TGGAAAAATGGCGGATTATGGTGGAAAGATGGCGGTTTTCTGGGACAAGATTGTGACTTC 1068
Query 1059 CGATG--G-ATGTAAGAACAAGATGATCTTGTGTGCGGTGATTGCTCTTGAAAGGCGCAA 1115
||||| | |||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 1069 CGATGATGGATGTAAGAACAAGATGATTTTGTGTGCTGTGATTGCGCTTGAAAGGCGCAA 1128
Query 1116 CAGCGAAGAGATTTGGGGAAAGGTCGAGTGGCATGACGCAGTTCTTACCGTTCCCATT-T 1174
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||| || |
Sbjct 1129 CAGCGAAGAGATTTGGGGGAAGGTCGAGTGGCATGACGCAGTTCTTACAGTTCCC-TTGT 1187
Query 1175 CATATGACGTCGTGTATGCTCTTTCCCCTACCGTTTGATGAGACA-GACTTGAATGAATG 1233
||||||| ||||||||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct 1188 CATATGAAGTCGTGTATGCTCTTTCCCCTACCGTTTGATGAGACAAGAC--G--TGAATG 1243
Query 1234 TGGTGAATCTTTATTGT-TTG--TGTATTGTATCATTTTGTTGGATGGTTTTGTCT 1286
|||||||||||| || | ||| ||||| |||||||||||||||||| || |||||
Sbjct 1244 TGGTGAATCTTTGTT-TCTTGCGTGTATCGTATCATTTTGTTGGATGCTTGTGTCT 1298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63252686700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5