BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490737
Length=1405
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39570.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1541 0.0
AT4G39560.1 | Symbols: | Galactose oxidase/kelch repeat superf... 111 1e-23
> AT4G39570.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:18384100-18385544 REVERSE LENGTH=1445
Length=1445
Score = 1541 bits (834), Expect = 0.0
Identities = 1065/1171 (91%), Gaps = 37/1171 (3%)
Strand=Plus/Plus
Query 253 CTCTCCTCTGTTCACCGGAGCTTTACGAGACTCGGTCACTCTTAGACCGCACCGAGAGTT 312
|||||||| |||||||||||||||||||||| |||||||| |||| ||| ||||||||||
Sbjct 294 CTCTCCTCCGTTCACCGGAGCTTTACGAGACACGGTCACTATTAGGCCGAACCGAGAGTT 353
Query 313 GTCTCTATTTGTGTTTACAAGAAGGAAATCCTGATCCTAACCCTCTCTGGTTCACTCTCT 372
|||| |||||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 354 GTCTGTATTTGTGTTTACAGGAGGGAAATCCTGATCCGAACCCTCTCTGGTTCACTCTCT 413
Query 373 GCCTGAAACCTGAAAGAAACCTAAAAAATGGCACCAAGAAGAAG-AG-A-AAGAAGTCAA 429
|| |||||||||| |||| |||||||||||||| ||||||||| || | |||| |||||
Sbjct 414 GCATGAAACCTGACAGAACCCTAAAAAATGGCAAGAAGAAGAAGAAGAAGAAGATGTCAA 473
Query 430 GTGGCAATCTTTTGATCCCAATCCCAGGTCCTAATCCTCCTCTTGCGCACTGGTCAGGTC 489
|||| ||||||||||||||||| |||| ||||||||| ||||||| ||||||||||||||
Sbjct 474 GTGGTAATCTTTTGATCCCAATTCCAGTTCCTAATCCCCCTCTTGAGCACTGGTCAGGTC 533
Query 490 ACGCGTCTGTTGGTTCCGATATCTA-TTACTTTGGCGGATACATGGAGGAGAATGTGCCT 548
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 534 ACGCGTCTGTTGGTTCCGATATCTACTT-CTTTGGCGGATACATGGAGGAGAATGTGCGT 592
Query 549 TCATCTAGAGTCGTGATCCTAGACTGCCGGTCTCACACGTTGCGTGAGGCTCCAAGCATG 608
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 593 TCCTCTAGAGTCGTGATCCTAGACTGCCGGTCTCACACGTTGCGTGAGGCTCCAAGCCTG 652
Query 609 CAGATGGCAAGGTTGGATCCTTCTGCTAGTGTCATTGATGGAAAGATTTATGTAGCTGGA 668
||||||| ||||| ||| ||| |||||||||| |||||||||||||||||||||||||||
Sbjct 653 CAGATGGAAAGGTCGGACCCTGCTGCTAGTGTTATTGATGGAAAGATTTATGTAGCTGGA 712
Query 669 GGTGTCGACGATGATGATTCAGATTCCTTGTACCCGATTGAGGTGTTCGACATAAAGACC 728
|||||||||| ||||||| ||||||||||||||||||| || ||||||||||||||||||
Sbjct 713 GGTGTCGACGGTGATGATGCAGATTCCTTGTACCCGATAGAAGTGTTCGACATAAAGACC 772
Query 729 CAAATTTGGGATCATATGCCTATCCCTTACTGGGAGAAAGACTGGAGTGATCTATCAAGA 788
|||||||||||||||| ||| |||||||||||||||||||||||| | | ||||||||||
Sbjct 773 CAAATTTGGGATCATAGGCCCATCCCTTACTGGGAGAAAGACTGGGGCGCTCTATCAAGA 832
Query 789 AGCGCATATATTGATGGAAAGTTCTACCTGAAGATTGGG-TGTAAGGTTATGGCTTATGA 847
||||| ||| ||||||||||||||||| ||| ||||||| || |||||||||||||||||
Sbjct 833 AGCGCGTATGTTGATGGAAAGTTCTACTTGACGATTGGGATG-AAGGTTATGGCTTATGA 891
Query 848 TCCAAAGGAAAGTAGATGGGACTTTGTC-GGATATCAGATGGGTCCGAGATGGTCATGGT 906
|| | ||||||||||||||||||||| | |||||||||||||||| ||| |||| ||||
Sbjct 892 TCTAGAGGAAAGTAGATGGGACTTTG-CTGGATATCAGATGGGTCAGAGTTGGTTTTGGT 950
Query 907 CTTGTAATTGCGTTATCGAGAATGTTTTGTACTGTCATGTTGGA-GGTTTCCGATGGTAT 965
|||||||||| ||||| |||||||||||||||||| ||| | || | ||||||||||| |
Sbjct 951 CTTGTAATTGTGTTATAGAGAATGTTTTGTACTGTTATGGT-GATGCTTTCCGATGGTTT 1009
Query 966 GACACTAAGCTGAGATTGTGGAAAGATATGAAGGGTTTGAGAGGACTACCTAAGTTGTCC 1025
||||||||||||||||||||||||| |||||| || ||| |||||||||||||||||||
Sbjct 1010 GACACTAAGCTGAGATTGTGGAAAGTTATGAA-GG--TGAAAGGACTACCTAAGTTGTCC 1066
Query 1026 CGTAATGTCTATGTTAAGATGGCAGATTATGGTGGAAAGATGGCGATTTTTTGGGACAAT 1085
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1067 CGTAATGTCGATGTTAAGATAGCAGATTATGGTGGAAAGATGGCGATTTTTTGGGACAAT 1126
Query 1086 CGTGT-CCCTTCTGCTTCCAATAAGAACAAAACAATTCGGTGCGCGGTGATTGCCCTTGA 1144
| | | ||||||||||||| ||| |||||||| |||||||||||||||||||||||||||
Sbjct 1127 CCT-TCCCCTTCTGCTTCCGATACGAACAAAATAATTCGGTGCGCGGTGATTGCCCTTGA 1185
Query 1145 AAGGCCCAACAGTGAAGAGATTTGGGGGACAGTCGAGTGGCATGAGGCAGTGCTTACAGT 1204
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1186 AAGGCCCAACAGTGAAGAGATTTGGGGGACGGTCGAGTGGCATGAGGCAGTGCTTACAGT 1245
Query 1205 TCCTGTGTCATATGAATTTGAACATGCTCTAGCTGTTACCGTTTGATGAATGACATACGA 1264
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1246 TCCTGTGTCATATGAGTTTGAACATGCTCTAGCTGTTACCGTTTGATGAATGACA---GA 1302
Query 1265 GACAGGCTTGAATGTGGTGAATCTTTAATGGTTTGTGGGTATT-GTATCATTTTTGTTGT 1323
| |||||||||||||||||||||||||||||||||||| | |||||||| |||||
Sbjct 1303 --C----TTGAATGTGGTGAATCTTTAATGGTTTGTGGGTATTTG-ATCATTTT-GTTGT 1354
Query 1324 ATGATTGTGTCTTGTGTAA--AGCTCTTATG-CT-AT--T---GACATTATTTCACTTGT 1374
||||||||||||||| | |||||||||| || || | |||||| ||||||||||
Sbjct 1355 ATGATTGTGTCTTGTCTTTTTAGCTCTTATGACTTATGCTATTGACATTGTTTCACTTGT 1414
Query 1375 AAACCTTTGATGCTTAGCTTACTTTCTGCTG 1405
|||||||||||| ||||||| ||||||||||
Sbjct 1415 AAACCTTTGATGGTTAGCTTTCTTTCTGCTG 1445
Score = 294 bits (159), Expect = 1e-78
Identities = 220/248 (89%), Gaps = 10/248 (4%)
Strand=Plus/Plus
Query 1 CGAGTAAAGAAAACGCGCTCGAGAACTCTCAAAGCAGTGAAGTGAAGTCAAATCCCTAAA 60
||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||| |
Sbjct 4 CGAGTAAAGCAAACGCGTTCGAGAACTCTCATAGCAGTGAAGTGAAGTCAAATCCCTAGA 63
Query 61 TTCACTTGCTCAACGGTGATTTTTTCTCGATAATTCCGCCAATGTCGTCACCTGAGCGGA 120
|| ||||||||||||| ||||| ||||||||||| ||||||||| ||||| ||| |||
Sbjct 64 TTGACTTGCTCAACGGCGATTTCATCTCGATAATT-AGCCAATGTCTTCACCGGAGAGGA 122
Query 121 AGAGGAAGAGGGTGACGTCGACGAAGAAGCCATCGCTTAGGaa-aa-aa-aaGCTTTCAC 177
|||||||||||||||||||||||||||| |||||| ||| ||| || || ||| ||||||
Sbjct 123 AGAGGAAGAGGGTGACGTCGACGAAGAATCCATCGGTTAAGAAGAAGAAGAAGATTTCAC 182
Query 178 CGGTGCTACCGCCGACGCCGATTCCGTCACTTCCTGATGATTTGCTTGTAAGTATCTTCG 237
|||||| | | |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 183 CGGTGC--C-G---ACGCCGATACCGTCACTTCCTGATGATTTGCTTGTAAGTATCTTCG 236
Query 238 CACGCGTC 245
|||| |||
Sbjct 237 CACGAGTC 244
> AT4G39560.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:18382291-18383803 REVERSE LENGTH=1513
Length=1513
Score = 111 bits (60), Expect = 1e-23
Identities = 115/140 (82%), Gaps = 10/140 (7%)
Strand=Plus/Plus
Query 248 TTCGA-CTCTCCTCTG-TTCACCGGAGCTTTACGAGACTCGGTCACTCTTAGACCGCACC 305
||||| ||||| | || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 233 TTCGATCTCTCAT-TGCTTCACCGGAGCTTTACGAGACTCGGTCACTCTTAGGCCGCACA 291
Query 306 GAGAGTTGTCTCTATTTGTGTTTACAAGAAGGAAATCCTGATCCT-AACCCTCTCTGGTT 364
||||| ||||||||| |||| ||| || || ||| | | ||||||| ||||||
Sbjct 292 GAGAGCTGTCTCTATCTGTGCTTAGG-GATCCCT-TC-TGA-CTTTAACCCTCGCTGGTT 347
Query 365 CACTCTCTGCCTGAAA-CCT 383
||||||||||| |||| |||
Sbjct 348 CACTCTCTGCC-GAAAACCT 366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69226551555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5