BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490739
Length=1354
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39590.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1624 0.0
AT1G61540.1 | Symbols: | Galactose oxidase/kelch repeat superf... 392 4e-108
> AT4G39590.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:18387331-18388732 REVERSE LENGTH=1402
Length=1402
Score = 1624 bits (879), Expect = 0.0
Identities = 1222/1380 (89%), Gaps = 54/1380 (4%)
Strand=Plus/Plus
Query 1 ATGTCTTCCACATCCAGATCTTCCGCCGCCACTAATCGCAAAGATCCACCGGGTAAGAAA 60
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 19 ATGTCTTCCACATCCAGATCTTCCGCCGCCAATAATCGCAAAGATCCACCGCGTAAGAAA 78
Query 61 AAC----A-A-G-CA-----GATGACGACAGAACCAAACTCGATCGGTTCACTTTCTAAT 108
||| | | | || | |||||| |||||||| |||||||| ||||||| |||||
Sbjct 79 AACAAGGAGACGCCATCTCCGGTGACGAGAGAACCAACCTCGATCGATTCACTTCCTAAT 138
Query 109 GACTTGTTATTGAACTGCTTTGCCCGTGTCTCTAGAATGTATTATCCCGCTCTCTCTCGC 168
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 139 GACTTGTTATTGAACTGCTTTGCCCGTGTCTCTAGAATGTATTATCCCGCTCTGTCTCGT 198
Query 169 GTCTCCAAAAGATTCCGATCCATCGTTACTTCACCAGAGATTTACCACACTCGATCTCTC 228
|||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 199 GTCTCCAAGAGATTTCGATCCATCGTTACTTCACCAGAGATTTACAACACTCGATCTCTC 258
Query 229 TTAAACCGTACCGAGAAGTGTCTCTATCTATGCTTACGCTTCCCTTTCGACAATAACACA 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 TTAAACCGTACCGAGAAGTGTCTCTATCTATGCTTACGCTTCCCTTTCGACAATAACACA 318
Query 289 CATTGGTTCACTCTCTACCAGAACCCTAATCGAAGCGTAAGCAACAAGTCAAGTGGCAAG 348
|| ||||||||||||||||| ||||||||||||| |||||| | | | ||||
Sbjct 319 CACTGGTTCACTCTCTACCAAAACCCTAATCGAACCGTAAG---C--G---A----CAAG 366
Query 349 GTTTTGGTCCAAATTCCATCTCCCGAGTATCCTCTTACGCAATCGTCGAATCTCGTAGCG 408
||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||| ||
Sbjct 367 GTTTTTCTCCAAATTCCATCTCCCCAGTATCCTCTTACGCTATCGTCGAATCTCGTCGCC 426
Query 409 GTTGGTTCTAATATCTACAAAATTGGTGGAACCGTTGGTGATGATTTCTGCCCTCTCGGC 468
||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||
Sbjct 427 GTTGGTTCTAATATCTACAGAATCGGTGGAACCGTTGGTGATGATTCCTGCCCTCTCGGC 486
Query 469 TGGGATAGGAAACCTTCTTCTAAAGTCTCTGTCCTGGATTGTCGGTCTCACACGTGGCGC 528
| |||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 487 TTCGATAGGGAACCTTCTTCGAAAGTCTCTATCCTGGATTGTCGGTCTCACACGTGGCGT 546
Query 529 GATGGTCCAAGAATGCGATTGGACAGGAAATCCTCCACAACAAGCGTAGTTGATGGGAAG 588
|||||||| || ||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 547 GATGGTCCGAGGATGCGATTGAACAGGAGATCCTCCACAACAAGCGTAGTTGATGGGAAG 606
Query 589 ATATATGTAACAGGAGGCACTAAAGACACGGATAATCCCTCAAACTGGATCGAAGTGTTT 648
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 607 ATATATGTAACAGGAGGCACTGAAGACACGGATAATCCCTCACACTGGATCGAAGTGTTT 666
Query 649 GATCCAAAAACACAAAGTTGGGGATCCGTTACGAACCCTCGCATCGT-GAGGCTTTGGGA 707
|||||||||||||||||||||||| | || |||||||||| |||||| ||| |||||||
Sbjct 667 GATCCAAAAACACAAAGTTGGGGAACTGTGACGAACCCTCACATCGTCAAGG-TTTGGGA 725
Query 708 GGAGGAAAGCTATAGACGTGTAGTCAAAAGCATAGGACATGAAGGAAAACTATACCTGTT 767
||||| | |||||||||||| ||||||||||||||||||||| |||||| |||||||||
Sbjct 726 GGAGGTATGCTATAGACGTGCAGTCAAAAGCATAGGACATGACGGAAAATTATACCTGTC 785
Query 768 TGGGGATGAGTTTGTAGTTTACAATCCAGAGGAAGGTATATGGAACCCAGTAGGAGAGGA 827
||||||| ||| ||| |||||| | ||||| ||||||| ||||||| |||||| |||| |
Sbjct 786 TGGGGATAAGTATGTGGTTTACGACCCAGATGAAGGTAAATGGAACTCAGTAGAAGAGCA 845
Query 828 TAGGCTTATCGGTTGTGCATTAAAG-TCGAGTTATTGCGTGATAGACAACATCTTGTTCT 886
| ||||||| |||| |||| | | | |||||| |||||||| | ||||||||||||||||
Sbjct 846 TTGGCTTATAGGTTATGCAAT-AGGCTCGAGTAATTGCGTGGTCGACAACATCTTGTTCT 904
Query 887 ACTGGGATCAAGGAGTGTTCAAATGGTACGACAGTAAGGTTCCTTCATGGAAGGAATTGA 946
|||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||
Sbjct 905 ACTGGGATCAAGGAGTGTTCAAATGGTATGACAGTAAGGTAAGTTCATGGAAGCAATTGA 964
Query 947 AAGGCCTTGAAGGGTTACC---TGATTTTAGCCACCGTGAGTATTGT-AGATTGGTGGAT 1002
||||||||||||||||||| |||||||||||| |||||||||||| || |||||||||
Sbjct 965 AAGGCCTTGAAGGGTTACCTGATGATTTTAGCCAGCGTGAGTATTGTAAG-TTGGTGGAT 1023
Query 1003 TTTGGTGGAAAGATGGCGGTGTTGTGGGATATATGGGAGTGTACTTCTGAGG-CATATAT 1061
||||||| |||||||||||||||||||||| |||||| ||| ||||| || | | ||
Sbjct 1024 CTTGGTGGGAAGATGGCGGTGTTGTGGGATAAATGGGA--GTA-TTCTGGGGTC-TGCAT 1079
Query 1062 GGCGATTTGGTGTGCTGAGATTTCACTTGAAAAGCGCGATGGAGATGAGATTTGGGGGAA 1121
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ---GATTTTCTGTGCTGAGATTTCACTTGAAAAGCGCGATGGAGATGAGATTTGGGGGAA 1136
Query 1122 GGTTGAGTGGTTTGATACTGTGCTTGCAGTTGGAGCGTCTTGTAGCTTGATCAA-TGCGA 1180
||||||||||||||||||||| |||| ||||||||||||||||||||||| || ||||
Sbjct 1137 GGTTGAGTGGTTTGATACTGTACTTGAAGTTGGAGCGTCTTGTAGCTTGAA-AAGTGCGG 1195
Query 1181 ATGCTCTTTCCGCTTCTGTTTGATGAAATGACGACTATTCATGAGAACATGCTTGAAGAG 1240
|||||||||| |||||||||||||||||||| |||||||| | |||||| |||||||||
Sbjct 1196 ATGCTCTTTCAGCTTCTGTTTGATGAAATGATGACTATTCGTAAGAACAAGCTTGAAGAA 1255
Query 1241 TGATGAAATTAGAAACAATA-TTCACTAATGCGGGTAATTTCGTTTTGTTTTGAATAGTT 1299
||||||||||||||||| || || | ||||| ||||| ||| ||||||||||||| ||
Sbjct 1256 TGATGAAATTAGAAACACTACTTGAATAATGTGGGTAGCTTCATTTTGTTTTGAATTTTT 1315
Query 1300 GCGTTTTTGAGATGTTTCC-TT--TCCG-AA-TATGTTGAATGATCGTTTCATGTTTTTA 1354
||||| | ||||| || | | || ||||||||||||||| ||||||||||||
Sbjct 1316 ACGTTTCC----T-TTTCCATTAGTATGCAACTATGTTGAATGATCGGTTCATGTTTTTA 1370
> AT1G61540.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr1:22702498-22703706 FORWARD LENGTH=1209
Length=1209
Score = 392 bits (212), Expect = 4e-108
Identities = 852/1143 (75%), Gaps = 116/1143 (10%)
Strand=Plus/Plus
Query 71 TGAC-GACAGAACCAAACTCGATCGGT-TCACTTTCTAATGACTTGTTATTGAACTGCTT 128
|||| || |||||||| ||| ||| | |||||| || ||||||||||||||||||||||
Sbjct 59 TGACAGA-AGAACCAATCTCTATC-ATGTCACTTCCTTATGACTTGTTATTGAACTGCTT 116
Query 129 -TGCCCGT-GTCTCTAGAATGTATTATCCCGCTCTCTCTCGCGTCTCCAAAAGATTCCGA 186
| | | | ||||| || |||||||||| ||||||| | ||| ||||||| || |||
Sbjct 117 CT-CAC-TCGTCTCAAGGTTGTATTATCCAACTCTCTCCCTCGTTTCCAAAACTTTTCGA 174
Query 187 TCCATCGTTACTTCAC-CAGAGA-TTTACCACACT-CGATCTCTCTTAAACCGTACCGAG 243
|| ||| ||||||||| | || | ||||| | | | ||||| | |||||||||||| ||
Sbjct 175 TCTATCATTACTTCACGC-GA-ACTTTACGAGA-TCCGATCACGCTTAAACCGTACGGAT 231
Query 244 AAGTGTCTCTATCTATGCTTACGCTTCCCTTTCGACAAT-AACACACATTGGTTCACTCT 302
||||||||||||| | || ||||||||| |||| || ||||| ||||||||||||||
Sbjct 232 AAGTGTCTCTATC--T--TT--GCTTCCCTTACGAC-ATGAACACGCATTGGTTCACTCT 284
Query 303 CTACC-AGAACCCTAATCGAAGCGTAAG-CAACAAGTCAAGTGGCAAGGTTTTGGTCCAA 360
|| || ||| |||||||||| ||| | | | || ||||||||| | || ||||||||
Sbjct 285 CTGCCGGGAA-CCTAATCGAAACGT-TGCCGAGAATTCAAGTGGCTATCTTCTGGTCCAA 342
Query 361 ATTCCATCTCCCGA--GTAT-CCTCTTACGCAATCGTCGAATCTCGTAGCGGTTGGTTCT 417
||||||||||| | || | | || | ||| ||||||| | || |||| |||||||||
Sbjct 343 GTTCCATCTCCCAATGGTTTACTTCCTGTGCATTCGTCGAGTGTCATAGCCGTTGGTTCT 402
Query 418 AATATCTACAAAATTGGTGGAACCGTTGGTGATGATTTCTG-CCCTCTCGGCTGGGATAG 476
|||||||||||||| || || | | | || | | | | | | | |||| | ||
Sbjct 403 AATATCTACAAAATCGGCGGCA-C-TAAGT-CT--TAT-AGACACAAAC-TCTGGAAAAG 455
Query 477 GAAAC-C--TTCTTCTAAAGTCTCTGTCCTGGATTGTCGGTCTCACACGTGGCG-CGATG 532
|| | | ||||||| ||||||||||||||||||||| ||||| |||||| | | |
Sbjct 456 GACGCGCTATTCTTCTTCTGTCTCTGTCCTGGATTGTCGGAGTCACAGGTGGCGTC-A-G 513
Query 533 G-TCCAAGAATGCGATTGG-AC-AGG-AAATCCTCCACAACAAGCGTAGTTGATGGGAAG 588
| |||| |||||||| ||| | || ||||||||| | | | |||||||||||||
Sbjct 514 GCTCCAGGAATGCGAGTGGCCCGGGGCTGTTCCTCCACAGTATGTGAAGTTGATGGGAAG 573
Query 589 ATATATGTAACAGGAGGCACT--A-AAGACA-CGGATAATCCCTCAAACTGGATCGAAGT 644
|||||| || |||||||| | | |||||| ||| | | ||| ||||||| |||||
Sbjct 574 ATATATATAGCAGGAGGCTGTAAAGAAGACATCGG-T--T-CCTTGTACTGGATTGAAGT 629
Query 645 GTTTGATCCAAAAACACAAAGTTGGGG-ATC-CGTTACGAACCC-TCGCATCGTGAGGCT 701
||||||||||||||| |||| |||||| | | | | | |||||| | |||| ||| | |
Sbjct 630 GTTTGATCCAAAAACTCAAACTTGGGGCA-CTC-TGAAGAACCCAT-GCAT--TGA-G-T 682
Query 702 -TTGGGAGGAGGA-AAGCTATAGACGTGTAGTCAAAAGCATAGGACATGAAGGAAAACTA 759
| | || | | |||||| ||| |||||||||| |||| | ||| |||||| ||
Sbjct 683 ATCAACATGA-TATTGGATATAGATGTGAAGTCAAAAGCTTAGGTCTTGATGGAAAAATA 741
Query 760 TACCTGTTTGGGGA-TGAGTTTGTAGTTTACAATCCAGAGGAAG---G-T--ATATGGA- 811
||| ||||| || | ||||||||| ||||||||| ||||||| | | | ||| |
Sbjct 742 TACATGTTT-GGAAGTGAGTTTGTGGTTTACAATTTTGAGGAAGATAGATGGAAATGTAT 800
Query 812 A--CCCAG-T-AGGA-GA---GGAT-AGGC-TTA-TCGGT-TG--T-GCATTAAAGTCGA 856
| || || | || | | | || | || || | | || | ||| |||| || |
Sbjct 801 AGGCCGAGATAAGTATAATTTGTATCATGCAGTAGACCCTATGTCTCGCA-TAAACTCTA 859
Query 857 GTTATTGCGTGATAGACAACATCTTGTTCTA-CTGGGATCAA--G-----GAGTGTTCAA 908
||| ||||||| ||||||| |||||||| | | |||| || | ||||||||||
Sbjct 860 GTTCTTGCGTGGTAGACAATGTCTTGTTC-ATTTTGGAT-AAGGGAACTCGAGTGTTCAA 917
Query 909 ATGGTACGACAGTAAGGTTCCTTCATGGAAGGAATTGAAAGGCCTTGAAGGGTTACCTGA 968
|||||| ||| |||||| || |||||||||||||| || ||||||| || |||||
Sbjct 918 ATGGTATGACTTTAAGGTAAGTTTGTGGAAGGAATTGAATGGTGTTGAAGGATTGCCTGA 977
Query 969 TTTTAGCCACCGTGAGTATTG-TAGATTGGTGGATTTTGGTGGAAAGATGGCGGTGTTGT 1027
||| || |||||| ||| || || | |||||||| ||||||||||||| ||||| ||||
Sbjct 978 TTTAAGTGACCGTGGGTA-TGTTAAAATGGTGGATCTTGGTGGAAAGATAGCGGTTTTGT 1036
Query 1028 GGGATATATGGGAGTGTACTTCTGAGGCATA-T-ATGGCGATTTGGTGTGCTGAGATT-T 1084
|| | | | | | || ||| | | | | | | | | |||||||||||||||||||
Sbjct 1037 GGCA-AGA-GTGTCTG-ACTAAT-AAGAAAATTAAAAG-GATTTGGTGTGCTGAGATTAG 1091
Query 1085 CACTTGAAAAG-CGCGATGGAGATGAGATTTGGGGGAAGGTTGAGTGGTTTGATACTGTG 1143
| |||| |||| |||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1092 C-CTTG-AAAGACGCGATAGAGATGAGATTTGGGGGAAGGTTGAGTGGTTTGATATTGTG 1149
Query 1144 CTT 1146
|||
Sbjct 1150 CTT 1152
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66666323760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5