BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490740
Length=936
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39610.1 | Symbols: | Protein of unknown function, DUF617 |... 1537 0.0
> AT4G39610.1 | Symbols: | Protein of unknown function, DUF617
| chr4:18393570-18394745 REVERSE LENGTH=1176
Length=1176
Score = 1537 bits (832), Expect = 0.0
Identities = 904/939 (96%), Gaps = 4/939 (0%)
Strand=Plus/Plus
Query 1 ATCAATTCAATAAGGAGGAGGAATAGAGAGCTAAAG-aaaa-aaaaaaGACTAGATTTCT 58
|||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||
Sbjct 1 ATCAATTCAATAAGGAGGAGGAATAGAGAGCTAAAGAAAAAGAAAAAAGACTACATTTCT 60
Query 59 ACGAGGACGTTGGTTC-TTTAGTCGTCGTCGGTCGTCGAAGAAAGATTTTCTCCTTTCTT 117
|| ||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||
Sbjct 61 ACAAGGACGTTGGTTCTTTTAGTCGTCGTCGGTCGTCGAAGAAAGATCTTCTCC-TTCTT 119
Query 118 TCTTCGCCGTACGATCGTCGTCTAATGGGAGAATCATCAAATCCAATGGCTACAAGTTCT 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCTTCGCCGTACGATCGTCGTCTAATGGGAGAATCATCAAATCCAATGGCTACAAGTTCT 179
Query 178 TCTTCCCCCTCCTCCTCAATTCCTCCTTCATCTCCATCACCTTCTCCGACGACCACAACC 237
|||||| |||||||||||||||||||||| |||||| |||| ||||||||| ||||||||
Sbjct 180 TCTTCCTCCTCCTCCTCAATTCCTCCTTCGTCTCCAACACCCTCTCCGACGTCCACAACC 239
Query 238 ACGCCGCCACGTCAGCATCTTCTCCTCCAACCACCATCTTCAAAAAAGAAGAAAAACAGA 297
|| ||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 240 ACTCCGCCACGTCAACATCCTCTCCTCCAGCCACCATCTTCAAAAAAGAAGAAAAACAGA 299
Query 298 ACAAACGTTTTCAGAGTTTTACGCACCGTGTTTCGCTCTTTCCCAATCTTTACAACACCA 357
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 300 ACAAACGTTTTCAGAGTCTTACGCACCGTGTTTCGATCTTTCCCAATCTTTACAACACCA 359
Query 358 TCCGTAGCATGCAAAATCCCGGTTATACATCCCGGTTTAGGCTTACCGGATCCACATCAC 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCCGTAGCATGCAAAATCCCGGTTATACATCCCGGTTTAGGCTTACCGGATCCACATCAC 419
Query 418 AACACGTCAAGAATCACCGGAACATTGTTTGGATACCGTAAAGGCCGAGTAAGTCTTTCC 477
||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 420 AACACGTCAAGAATCACCGGAACGTTATTCGGATACCGTAAAGGCCGAGTAAGTCTTTCC 479
Query 478 ATTCAAGAAAACCCTAAATGTTTACCTTCTTTAGTCGTAGAACTCGCCATGCAAACCACA 537
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 480 ATTCAAGAAAACCCTAAATGTTTACCTTCTTTAGTCGTGGAGCTCGCCATGCAAACCACA 539
Query 538 ACCCTTCAAAAAGAGCTAAGCACGGGAATGGTGAGAATAGCTCTCGAGACTGAGAAACAG 597
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ACGCTTCAAAAAGAGCTAAGCACGGGAATGGTGAGAATAGCTCTCGAGACTGAGAAACAG 599
Query 598 CCTCGAGCAGATAATAATAACAATACAACCGAAAAGAAGACGGATATTTTGGAAGAACCG 657
|||||||| |||||||| || || |||||| |||||||| ||||||||||||||||||
Sbjct 600 CCTCGAGCTGATAATAACAATTCTAAAACCGAGAAGAAGACAGATATTTTGGAAGAACCG 659
Query 658 TTATGGACAATGTATTGTAAAGGAGAGAAAACGGGTTACGGTGTGAAACGAGAAGCGACC 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTATGGACAATGTATTGTAAAGGAGAGAAAACGGGTTACGGTGTGAAACGAGAAGCGACC 719
Query 718 GAAGAAGATCTTAACGTGATGGAGTTGTTACGTCCGGTTTCTATGGGAGCCGGAGTTTTA 777
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 720 GAAGAAGATCTTAACGTGATGGAGTTGTTACGTCCGGTGTCTATGGGCGCCGGAGTTTTG 779
Query 778 CCGGGAAACTCGGAGTCGGAAGGACCCGACGGCGAAATGGCGTATATGAGAGCTTATTTT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CCGGGAAACTCGGAGTCGGAAGGACCCGACGGCGAAATGGCGTATATGAGAGCTTATTTT 839
Query 838 GAGAGAGTTATTGGGTCTAAAGATTCAGAGACTTTTTATATGTTGAGTCCTGAAGGGAAT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GAGAGAGTTATTGGGTCTAAAGATTCAGAGACTTTTTATATGTTGAGTCCTGAAGGGAAT 899
Query 898 AATGGACCCGAACTTAGCTTTTTCTTTGTGAGAGTTTGA 936
|||||||||||||||||||||||||||||||||||||||
Sbjct 900 AATGGACCCGAACTTAGCTTTTTCTTTGTGAGAGTTTGA 938
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45763307917
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5