BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490746
Length=1518
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39660.1 | Symbols: AGT2 | alanine:glyoxylate aminotransfera... 2388 0.0
> AT4G39660.1 | Symbols: AGT2 | alanine:glyoxylate aminotransferase
2 | chr4:18406765-18409564 FORWARD LENGTH=1765
Length=1765
Score = 2388 bits (1293), Expect = 0.0
Identities = 1446/1521 (95%), Gaps = 6/1521 (0%)
Strand=Plus/Plus
Query 1 TCTTTCTAATAAATGGCGTTACAAAGGCAACTCCTGAAGAGAGCTTCTTCCGGTATCTAT 60
||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 21 TCTATCTAATAAATGGCGTTACAAAGGCAACTCCTGAAGAGAGCTACTTCCGATATCTAT 80
Query 61 CATCGCAGTGAGATTTCTCTCCTCCGTACTGATTTCTCCACTTCTCCTTCGATTGCTGAT 120
|| ||| ||| ||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 81 CACCGCCGTGCGATCTCTCTCCTCCGTACTGATTTCTCTACTTCTCCTTCGATTGCTGAT 140
Query 121 GCTCCGCCGCAGATTCCGCCGTTCGATT-ACCAGCCACGGCCGTATAAAGGTCCTTCCGC 179
||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 141 GCTCCGCCGCACATTCCGCCGTTCG-TTCACCAGCCACGGCCGTATAAAGGTCCTTCCGC 199
Query 180 CGATGAAGTTTTCCAGAAACGGAAGAAGTTTCTCGGACCTTCTCTTTTCCACTTCTACCA 239
|||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 200 CGATGAGGTTTTACAGAAACGGAAGAAGTTTCTCGGACCTTCTCTTTTCCACTACTACCA 259
Query 240 AAAGCCTCTTAACATTGTTGAAGGGAAGATGCAGTACTTGTTTGATGAGAGTGGTAGGCG 299
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 260 GAAGCCTCTTAACATCGTTGAAGGGAAGATGCAGTACTTGTATGATGAGAGTGGTAGGCG 319
Query 300 ATATCTTGATGCCTTTGCTGGAATAGTCACTGTCTCGTGCGGTCACTGCCATCCGGAGAT 359
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 320 ATATCTGGATGCCTTTGCTGGAATAGTCACTGTGTCGTGCGGTCACTGCCATCCGGATAT 379
Query 360 TCTAAATGCTATCGTGGAACAGAGCAAGCTTCTTCAGCATGCGACGACCATTTACCTGCA 419
||| ||||| || ||||||||||||||| |||||||| ||||| || |||||||||||
Sbjct 380 TCTTAATGCGATTACGGAACAGAGCAAGCTACTTCAGCACGCGACTACTATTTACCTGCA 439
Query 420 TCATGCCATAGGCGATTTCGCTGAAGCATTAGCTGCTAAGATGCCTGGAAATCTAAAGGT 479
||||||||| || ||||| ||||||||||| ||||| |||||||| |||||||| |||||
Sbjct 440 TCATGCCATTGGTGATTTTGCTGAAGCATTGGCTGCCAAGATGCCCGGAAATCTTAAGGT 499
Query 480 TGTATACTTTGTGAATTCTGGATCAGAAGCTAATGAGCTAGCGATGATGATGGCTAGGCT 539
||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 500 TGTGTACTTTGTGAATTCTGGCTCAGAAGCTAATGAGCTAGCAATGATGATGGCTAGGCT 559
Query 540 TTACACTGGTAGCCTTGAGATGATTTCCTTGAGAAATGCTTATCATGGTGGAAGTTCTAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 560 TTACACTGGTAGCCTTGAGATGATTTCCTTGAGAAATGCTTATCATGGTGGAAGTTCCAA 619
Query 600 TACCATTGGACTAACAGCTCTGAACACATGGAAGTACCCATTACCACAGGGGGAAATCCA 659
||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 620 TACTATTGGACTAACTGCTCTTAACACATGGAAGTACCCATTACCTCAGGGGGAAATCCA 679
Query 660 TCACGTTGTAAATCCAGATCCATACCGTGGAGTCTTTGGCTCTGATGGTTCTCTTTATGC 719
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 680 TCACGTAGTAAATCCAGATCCATACCGTGGAGTTTTTGGCTCTGATGGTTCTCTTTATGC 739
Query 720 TAAAGATG-TCAAAGACCACATCGAGTATGGTACCTCTGGAAAAGTAGCGGGATTTATCG 778
|||||||| || | ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 740 TAAAGATGTTC-ATGACCACATCGAGTATGGTACCTCTGGAAAAGTAGCTGGATTTATCG 798
Query 779 CAGAGACCATCCAGGGGGTCGGAGGGGCTGTAGAATTGGCTCCTGGTTACTTAAAGTCGG 838
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 799 CAGAGACCATCCAGGGGGTCGGAGGAGCTGTAGAATTGGCTCCTGGTTACTTAAAGTCGG 858
Query 839 TTTATGAAATTGTTCGCAACGCTGGTGGTGTATGCATTGCCGATGAAGTCCAAACTGGAT 898
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 859 TTTATGAAATTGTTCGCAACGCTGGTGGTGTATGCATTGCTGATGAAGTCCAAACTGGAT 918
Query 899 TTGGGAGAACAGGAAGTCATTATTGGGGTTTCCAGACTCAAGATGTGGTTCCTGACATAG 958
||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 919 TTGGGCGAACAGGAAGCCACTATTGGGGTTTCCAGACTCAAGATGTGGTTCCTGACATAG 978
Query 959 TCACAATGGCAAAGGGAATTGGAAATGGATTGCCATTAGGAGCTGTGGTGACTACACCAG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 TCACAATGGCAAAGGGAATTGGAAATGGATTGCCATTAGGAGCTGTGGTGACTACACCAG 1038
Query 1019 AAATCGCGAGTGTTTTAGCTAGCAAGATTCTGTTCAACACATTTGGTGGAAACCCGGTTT 1078
||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1039 AAATCGCAAGTGTTTTAGCTAGCAAGATTCTGTTCAACACTTTTGGTGGGAACCCGGTTT 1098
Query 1079 GTTCAGCTGGTGGACTTGCTGTTCTAAACGTTATTGACAAGGAGAAACGCCAAGAACATT 1138
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1099 GTTCAGCTGGTGGACTTGCGGTTCTAAACGTTATTGATAAGGAGAAACGCCAAGAACATT 1158
Query 1139 GTGCTGAAGTTGGTTCACACCTTATTCAACGTTTGAAAGATCTGCAGAAAAGACATGATA 1198
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1159 GTGCTGAAGTTGGTTCACACCTTATACAACGTTTGAAAGATGTGCAGAAAAGACATGATA 1218
Query 1199 TCATTGGAGATGTGAGAGGAAGAGGACTAATGGTTGGGATCGAGCTTGTGAGTGACCGGA 1258
|||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1219 TCATTGGAGACGTGAGAGGAAGAGGGTTAATGGTTGGGATTGAGCTTGTGAGTGACCGGA 1278
Query 1259 AAGACAAGACACCAGCCAAGGCTGAAACAGCTGTCTTGTTTGAGCAACTTAGAGAACTTG 1318
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1279 AAGACAAGACACCAGCCAAGGCTGAAACATCTGTCTTGTTTGAGCAACTTAGAGAACTTG 1338
Query 1319 GAATTCTCGTTGGAAAAGGAGGACTTCATGGGAACGTTTTCAGGATAAAGCCACCAATGT 1378
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 GCATTCTCGTCGGAAAAGGAGGACTTCATGGGAACGTTTTCAGGATAAAGCCACCAATGT 1398
Query 1379 GTTTCACTAAAGATGATGCAGATTTCTTGGTAGATGCATTGGACTATTCCATCTCGAGGT 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1399 GTTTCACTAAAGATGATGCAGATTTCTTGGTAGATGCATTGGACTATTCCATCTCCAGGT 1458
Query 1439 TGTGAACAAGGATGAAACAAAGCCAATGAGAGTTTTCAAC-AGTATGATCCGTTTTAATG 1497
|||||||||||||||||||||||||| ||||||||| ||| | ||||| |||||||||||
Sbjct 1459 TGTGAACAAGGATGAAACAAAGCCAACGAGAGTTTTTAACCA-TATGAACCGTTTTAATG 1517
Query 1498 TTTCCGCGTCTTTGTAACGAA 1518
|||||||||||||||||||||
Sbjct 1518 TTTCCGCGTCTTTGTAACGAA 1538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74899213140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5