BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490748
Length=407
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39675.1 | Symbols: | unknown protein; Has 30201 Blast hits... 542 1e-153
> AT4G39675.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:18413775-18414240
FORWARD LENGTH=466
Length=466
Score = 542 bits (293), Expect = 1e-153
Identities = 370/407 (91%), Gaps = 6/407 (1%)
Strand=Plus/Plus
Query 2 ACATTTATTTCGTTAATTAACACTAAAAAGAAATGTCGTCCATCGGAGCAAGTTACGCAC 61
|||||||||| ||||| |||||||||||| |||||||||||| ||||||||||||||||
Sbjct 35 ACATTTATTTTGTTAACCAACACTAAAAAGTAATGTCGTCCATTGGAGCAAGTTACGCAC 94
Query 62 ACCTACAAGTCATGCagaagaagcaaaaggagaagatgaaaaagagagaaaaagagagaa 121
||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||
Sbjct 95 ACCTACAAGTCATGCAGAAGAAGCAGAAGGAGAAGATGAAAAAGCTAGAAAAGGAGAGAA 154
Query 122 aCTTCGGCCACGATGAAACTCATAGCCGTGA-TGTCGAAACCCCTTTTGCCTCGGGAAGG 180
|||||| |||||||||| ||||||| | | ||||||||| ||||||| || ||||||
Sbjct 155 ACTTCGACCACGATGAAGCTCATAGAC-TCCCTGTCGAAACATCTTTTGCGTCCGGAAGG 213
Query 181 ATTTCTAATAAAATCTATCCTTCTCGTTTATCTTATGAACAAGTAGAGATCAAATCCCAA 240
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||
Sbjct 214 ATTTCTAATAAAATCTATCCTTCTCGTTTGTCTTATGAACAAGTAGAGTTCAAATCACAA 273
Query 241 AAGTGAATTTCAAAGTGTAATGAAATTCTTGAAGAGGTTATTCAAAGACTTCTCTCTCAA 300
||||||| |||||||| ||||||||||||||| ||| | |||| || |||||||| |||
Sbjct 274 AAGTGAAGTTCAAAGT--AATGAAATTCTTGAAAAGGATCTTCAGAGCCTTCTCTCCCAA 331
Query 301 GTATTTGTCCTTTATGTTTGCATGTAATTATGTATGTATGTGTGATGTGTCCAAAACGTA 360
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 332 GTATTTGTCCTTTGTGTTTGCATGTAATTATGTATGTATGTGTGATGTGTCTAAAACGTA 391
Query 361 TCTTGGTCGTGTTTTTGTAGTTTTGTGAAAGTGTACAATTTGTGTGT 407
|||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 392 TCTTGGTCGTCTTT--GTAGTTTTGTGAAAGTGTACAATTTGTGTGT 436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19252547867
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5