BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490753
Length=790
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39710.1 | Symbols: FKBP16-2 | FK506-binding protein 16-2 | ... 1251 0.0
> AT4G39710.1 | Symbols: FKBP16-2 | FK506-binding protein 16-2
| chr4:18427039-18428375 REVERSE LENGTH=914
Length=914
Score = 1251 bits (677), Expect = 0.0
Identities = 753/790 (95%), Gaps = 4/790 (1%)
Strand=Plus/Plus
Query 1 GGCTTCACGCAGATAAGGAAGCAGAGAACGAAACGAAGAATCAAATAAGAATGGCGATGT 60
||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| |
Sbjct 1 GGCTTCACGCAGATAAGGAAGCAGAGATCGAAACGAAGACTCAAAGAAGAATGGCGATTT 60
Query 61 CTACTTTAACACTTACACAATCTCTTTATACACGTTCCTTCAGACCCACCAtcttctctt 120
||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||| ||
Sbjct 61 CTACTTTAACACTCACACAATCTCTCTATACACGTTCCTTCAGACCAACCATCTTCTTTT 120
Query 121 cttcttcttcttcctcgtccttctcgtgtctctg---ttcttcctccGACTGCGAGCCGA 177
|||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||
Sbjct 121 CTTCTTCTTCTTCCTCGTCCTTTTCGTGTCTCTGTTCTTCTTCCTCCGATTGCGAGCCGA 180
Query 178 AACTCTCCGTAAAGAAACGCGTTTTCGGAGTGGGTTTAGGGTTATTAGCTGCTTCGATTC 237
|||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 181 AACTCTCCGTCAAGAAACGCGTTTTCGGAGTGGGTTTAGGGTTCCTAGCTTCTTCGATTC 240
Query 238 TCTCTCTGACGCCTCTGGACGCAGACGCCACGAGGATTGACTACTACGCCACTGTTGGAG 297
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 TCTCTCTAACGCCTCTGGACGCAGACGCCACGAGGATTGACTACTACGCCACTGTAGGAG 300
Query 298 ATCCTCTCTGCGAATACAGCTACGCAAAATCAGGACTTGGATTTTGCGATCTCGATGTTG 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATCCTCTCTGCGAATACAGCTACGCAAAATCAGGACTTGGATTTTGCGATCTCGATGTTG 360
Query 358 GATTTGGTGATGAAGCCCCTCGTGGCGTTCTCGTCAATATCCATTACACGGCGAGGTTTG 417
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 361 GATTTGGTGATGAAGCCCCTCGTGGCGTACTCGTCAATATCCATTACACGGCGAGGTTTG 420
Query 418 CAGATGGAACATTGTTTGACAGTAGCTATAAGCGTGCAAGACCACTTACTATGCGAATTG 477
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CAGATGGAACGTTGTTTGACAGTAGCTATAAGCGTGCAAGACCACTTACTATGCGAATTG 480
Query 478 GGGTCGGCAAGGTTATTAGGGGTCTAGACCAAGGGATTCTTGGAGGCGAAGGAGTACCTC 537
| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 481 GAGTCGGCAAGGTAATTAGGGGACTAGACCAGGGGATTCTTGGAGGCGAAGGAGTACCTC 540
Query 538 CTATGCGAGTAGGCGGAAAGCGTAAACTTCAGATTCCACCTAAGTTAGCTTATGGACCAG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTATGCGAGTAGGCGGAAAGCGTAAACTTCAGATTCCACCTAAGTTAGCTTATGGACCAG 600
Query 598 AGCCTGCAGGATGCTTTTCTGGTGACTGTAACATACCTGGCAATGCAACTTTGCTCTATG 657
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 601 AGCCTGCAGGATGCTTTTCTGGTGACTGCAACATACCTGGCAATGCAACTTTGCTCTATG 660
Query 658 ATATCAACTTTGTTGAGATCTACTCGGGAAGTAACACAAGATGAAGCCAACTCCAATTTT 717
||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||
Sbjct 661 ATATCAACTTTGTTGAGATCTACCCAGGAAGTAATACAAGATGAAGCCAACTCCAATCC- 719
Query 718 CGTTTGGTAAAGGAAGAAACAACTATGTATATGATGTATATCACCAGGTGATTCCTTTTG 777
||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 720 CGTTTGGTAAAGGAACAAACAACTATGTATGTGATGTATATCACCAGGTGATTACTTTTG 779
Query 778 ACCATCTTCA 787
|| | |||||
Sbjct 780 ACAAGCTTCA 789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38429122455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5