BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490754 Length=1046 Score E Sequences producing significant alignments: (Bits) Value AT4G39720.1 | Symbols: | VQ motif-containing protein | chr4:18... 1493 0.0 > AT4G39720.1 | Symbols: | VQ motif-containing protein | chr4:18429892-18430950 REVERSE LENGTH=1059 Length=1059 Score = 1493 bits (808), Expect = 0.0 Identities = 982/1062 (92%), Gaps = 28/1062 (3%) Strand=Plus/Plus Query 1 AACTCGAGTATCCATTCTCA--TCTAAATCAATTTCTTACGTTTTCTCTCGTCAAAATAt 58 ||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||| | Sbjct 9 AACTCAAGTATCCATTCTCACCTCTAAATCAATTTCTTACGTTTTCTCTCGTC-AAA-GT 66 Query 59 tttttcctttttttGATCACGAGATGGAGTCCGGTAATAGTAGTAGCATGCAATCTTCAA 118 |||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 67 CTTTT--TTTCTTTG-TCACGAGATGGAGTCCGGTAATAGTAGTAGCATGCAATCTTCAA 123 Query 119 GCGGCGGTGGCGGAGGAGGAGAAGAAGAGTACGATTCACGCGCCGCTGATCAATCCATCT 178 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | Sbjct 124 GCGGCGGTGGCGGAGGAGGAGAAGAAGAATACGATTCACGCGCCGCAGATCAATCCATTT 183 Query 179 CCGCCTTCTTCGACCAGCACAACCACCACGTGTCATCTTTACCCCCGCCGCAACAAAACC 238 |||||||||||||||| |||||| |||||||||||||| ||||| ||||||||||||||| Sbjct 184 CCGCCTTCTTCGACCACCACAACAACCACGTGTCATCTATACCCACGCCGCAACAAAACC 243 Query 239 ACCTCAACCTCCTCCATTTCGACCATaacaacaacaactctctaataccaccaaactact 298 | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 244 ATCGCAACCTCCTCCATTTCGACCATAACAACAACAACTCTCTAATACCACCAAACTACT 303 Query 299 tcaacaacaacaacaacaCGTTCTTACCCGTAAACCAACAACTCGACCCGATATCCCAAC 358 | |||||||||||||||||||||||||||||||||| ||||||||| || |||| Sbjct 304 T------TAACAACAACACGTTCTTACCCGTAAACCAACAACCCGACCCGATTTCTCAAC 357 Query 359 CCGACCTCCGAACTTTCTCATCCACGTCATCACTCCCTCCTCCTAACAATATAGGAGTAA 418 |||||||||||| | ||| |||||||||||||||||||| |||||||||||||||||| Sbjct 358 TCGACCTCCGAACCTCCTCCGCCACGTCATCACTCCCTCCTACTAACAATATAGGAGTAA 417 Query 419 TCAAGAAAACAAAGAAAAGATCACGAGCATCAAGAAGAGCACCAACGACGGTTCTAACGA 478 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 418 TCAAGAAAACAAAGAAAAGATCTCGAGCATCAAGAAGAGCACCAACGACGGTTCTAACGA 477 Query 479 CGGACACTTCCAACTTCCGAGCGATGGTTCAAGAGTTTACCGGAATCCCAGCTCCACCTC 538 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 478 CGGATACTTCCAACTTCCGAGCGATGGTTCAAGAGTTTACCGGAATCCCAGCTCCACCGC 537 Query 539 TATTCAACAAC---TCCGTCGTGAACACCACGCGTCTCAACACCTTCCTCGGCTTGTCTT 595 ||||||||||| ||| |||||||||||||||| |||||||| |||||||||||||||| Sbjct 538 TATTCAACAACAACTCCATCGTGAACACCACGCGCCTCAACACTTTCCTCGGCTTGTCTT 597 Query 596 CTTCTTCGCCAAACACGTACAACACCAACAGTCTCTTGTTACGACCGTTTGCTCAAAAAC 655 |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct 598 CTTCTTCGCCAAACACTTACAACACCAACAATCTCTTGTTACGACCGTTTGCTCAAAAAC 657 Query 656 TCACCTCAA-CGTCTCCTCTTTTATCCGGATCACAGATTCAGCAATATCAAAACCCTAAC 714 |||| || | || ||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 658 TCAC-TCCAGCGACTCCTCTCTTATCCGGATCACAAATTCAGCAATATCAAAACCCTAAC 716 Query 715 AACGGTTTCGAGAATGTGAATCTGCAAGCTCTTCTTCAAGCTCAAATTTCAAACCCTAGA 774 |||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 717 AACGGTTTCGAGGATATGAATCTGCAAGCTCTTCTTCAAGCTCATATTTCAAACCCTAGA 776 Query 775 AGCAATGAGCATGATCAGTTTGGCCTTGGTATGATGCAGAGTCCATCTACTAATCCTCCT 834 ||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||| Sbjct 777 AGCAATGAGCACGATCAGTTTGGTCTTGGTATGATGCAGACTCCATCTACTAATCCTCCT 836 Query 835 ACGACAACGGCAGCAGCTAACGGGAACATAACCACTGGTGATACTGGAAGCTACGGTGGT 894 || ||||||||||| |||||||||||||||| ||| ||||||| ||||||||||||||| Sbjct 837 ACTACAACGGCAGCGGCTAACGGGAACATAAACACCGGTGATAATGGAAGCTACGGTGGC 896 Query 895 TCCGATCATGATCATAATAATGACGGTACTTGGTTATGTTCATCTTCCGACCAGAGAACA 954 ||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct 897 TCCGATCATGAACATAATAATGACGGTACTTGGTTATCTTCGTCTTCCGACCAGAGAACA 956 Query 955 TAAATATAT--ATGTA--GTCCAA-----AA-TCAAAGCTAATCTCTTGACATGATTATT 1004 ||||||||| ||||| |||||| || |||||||||||||||||||||||||| | Sbjct 957 TAAATATATTTATGTATAGTCCAAGTCCGAAATCAAAGCTAATCTCTTGACATGATTACT 1016 Query 1005 CAACAAATTAAACATAGCACATATAGGATGATGAAGTTACTC 1046 |||||||||||||||||||||||||| ||||||||||||||| Sbjct 1017 CAACAAATTAAACATAGCACATATAGCATGATGAAGTTACTC 1058 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51289064087 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5