BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490754
Length=1046
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39720.1 | Symbols: | VQ motif-containing protein | chr4:18... 1493 0.0
> AT4G39720.1 | Symbols: | VQ motif-containing protein | chr4:18429892-18430950
REVERSE LENGTH=1059
Length=1059
Score = 1493 bits (808), Expect = 0.0
Identities = 982/1062 (92%), Gaps = 28/1062 (3%)
Strand=Plus/Plus
Query 1 AACTCGAGTATCCATTCTCA--TCTAAATCAATTTCTTACGTTTTCTCTCGTCAAAATAt 58
||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||| |
Sbjct 9 AACTCAAGTATCCATTCTCACCTCTAAATCAATTTCTTACGTTTTCTCTCGTC-AAA-GT 66
Query 59 tttttcctttttttGATCACGAGATGGAGTCCGGTAATAGTAGTAGCATGCAATCTTCAA 118
|||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 CTTTT--TTTCTTTG-TCACGAGATGGAGTCCGGTAATAGTAGTAGCATGCAATCTTCAA 123
Query 119 GCGGCGGTGGCGGAGGAGGAGAAGAAGAGTACGATTCACGCGCCGCTGATCAATCCATCT 178
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 124 GCGGCGGTGGCGGAGGAGGAGAAGAAGAATACGATTCACGCGCCGCAGATCAATCCATTT 183
Query 179 CCGCCTTCTTCGACCAGCACAACCACCACGTGTCATCTTTACCCCCGCCGCAACAAAACC 238
|||||||||||||||| |||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 184 CCGCCTTCTTCGACCACCACAACAACCACGTGTCATCTATACCCACGCCGCAACAAAACC 243
Query 239 ACCTCAACCTCCTCCATTTCGACCATaacaacaacaactctctaataccaccaaactact 298
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 ATCGCAACCTCCTCCATTTCGACCATAACAACAACAACTCTCTAATACCACCAAACTACT 303
Query 299 tcaacaacaacaacaacaCGTTCTTACCCGTAAACCAACAACTCGACCCGATATCCCAAC 358
| |||||||||||||||||||||||||||||||||| ||||||||| || ||||
Sbjct 304 T------TAACAACAACACGTTCTTACCCGTAAACCAACAACCCGACCCGATTTCTCAAC 357
Query 359 CCGACCTCCGAACTTTCTCATCCACGTCATCACTCCCTCCTCCTAACAATATAGGAGTAA 418
|||||||||||| | ||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 358 TCGACCTCCGAACCTCCTCCGCCACGTCATCACTCCCTCCTACTAACAATATAGGAGTAA 417
Query 419 TCAAGAAAACAAAGAAAAGATCACGAGCATCAAGAAGAGCACCAACGACGGTTCTAACGA 478
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 418 TCAAGAAAACAAAGAAAAGATCTCGAGCATCAAGAAGAGCACCAACGACGGTTCTAACGA 477
Query 479 CGGACACTTCCAACTTCCGAGCGATGGTTCAAGAGTTTACCGGAATCCCAGCTCCACCTC 538
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 478 CGGATACTTCCAACTTCCGAGCGATGGTTCAAGAGTTTACCGGAATCCCAGCTCCACCGC 537
Query 539 TATTCAACAAC---TCCGTCGTGAACACCACGCGTCTCAACACCTTCCTCGGCTTGTCTT 595
||||||||||| ||| |||||||||||||||| |||||||| ||||||||||||||||
Sbjct 538 TATTCAACAACAACTCCATCGTGAACACCACGCGCCTCAACACTTTCCTCGGCTTGTCTT 597
Query 596 CTTCTTCGCCAAACACGTACAACACCAACAGTCTCTTGTTACGACCGTTTGCTCAAAAAC 655
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 598 CTTCTTCGCCAAACACTTACAACACCAACAATCTCTTGTTACGACCGTTTGCTCAAAAAC 657
Query 656 TCACCTCAA-CGTCTCCTCTTTTATCCGGATCACAGATTCAGCAATATCAAAACCCTAAC 714
|||| || | || ||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 658 TCAC-TCCAGCGACTCCTCTCTTATCCGGATCACAAATTCAGCAATATCAAAACCCTAAC 716
Query 715 AACGGTTTCGAGAATGTGAATCTGCAAGCTCTTCTTCAAGCTCAAATTTCAAACCCTAGA 774
|||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 717 AACGGTTTCGAGGATATGAATCTGCAAGCTCTTCTTCAAGCTCATATTTCAAACCCTAGA 776
Query 775 AGCAATGAGCATGATCAGTTTGGCCTTGGTATGATGCAGAGTCCATCTACTAATCCTCCT 834
||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 777 AGCAATGAGCACGATCAGTTTGGTCTTGGTATGATGCAGACTCCATCTACTAATCCTCCT 836
Query 835 ACGACAACGGCAGCAGCTAACGGGAACATAACCACTGGTGATACTGGAAGCTACGGTGGT 894
|| ||||||||||| |||||||||||||||| ||| ||||||| |||||||||||||||
Sbjct 837 ACTACAACGGCAGCGGCTAACGGGAACATAAACACCGGTGATAATGGAAGCTACGGTGGC 896
Query 895 TCCGATCATGATCATAATAATGACGGTACTTGGTTATGTTCATCTTCCGACCAGAGAACA 954
||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 897 TCCGATCATGAACATAATAATGACGGTACTTGGTTATCTTCGTCTTCCGACCAGAGAACA 956
Query 955 TAAATATAT--ATGTA--GTCCAA-----AA-TCAAAGCTAATCTCTTGACATGATTATT 1004
||||||||| ||||| |||||| || |||||||||||||||||||||||||| |
Sbjct 957 TAAATATATTTATGTATAGTCCAAGTCCGAAATCAAAGCTAATCTCTTGACATGATTACT 1016
Query 1005 CAACAAATTAAACATAGCACATATAGGATGATGAAGTTACTC 1046
|||||||||||||||||||||||||| |||||||||||||||
Sbjct 1017 CAACAAATTAAACATAGCACATATAGCATGATGAAGTTACTC 1058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51289064087
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5