BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490756
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39740.1 | Symbols: | Thioredoxin superfamily protein | chr... 1578 0.0
> AT4G39740.1 | Symbols: | Thioredoxin superfamily protein | chr4:18435293-18437136
REVERSE LENGTH=1165
Length=1165
Score = 1578 bits (854), Expect = 0.0
Identities = 1036/1120 (93%), Gaps = 28/1120 (3%)
Strand=Plus/Plus
Query 1 AAACAGAGAAGAAGAACCAAATTCAATGCTTCCTTGTCGCCGGCTTGTTCTTTCCTGCAA 60
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 17 AAACAGAGAAGAAGAACCAAATTCAATGCTTCCTTGTCGCCGTCTTGTTCTGTCCTGCAA 76
Query 61 AAATGGTGCAT-CCAATTTTCTCCGAAGGTCTGGACCATCGAAACGAATTCAGTCATTCA 119
||| || | ||| |||||||||||||| ||||||||||||||||||||| ||| |||
Sbjct 77 GAATCAAGC-TGCCAGTTTTCTCCGAAGGTGTGGACCATCGAAACGAATTCAATCAGTCA 135
Query 120 ATTACAGTAAATCAACAAGACAGGGCCATGAAATTCCAGATGTTAACCCTCTATTTCCTA 179
||||| ||||||||||||||||||||||||||||||||||||| || ||||| ||||| |
Sbjct 136 ATTACTGTAAATCAACAAGACAGGGCCATGAAATTCCAGATGTGAAACCTCTTTTTCCCA 195
Query 180 TGGGAGGAGGAACTCAAGCTTCTTCTCGTTCTCGTGTTCGTTATGCTGTTCCAGCGATTG 239
|||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||
Sbjct 196 CAGGAGGAGGAACTCAAGCTCCTTCTCGTTCTCGTGCTCGTTATGCTGTTCCTGCGATTC 255
Query 240 TACTTGGTTTTGCCGGATTCATCACCTTTCTTCATTACAACGACGAAAGGAGAGCAGTTC 299
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 256 TACTTGGTTTTGCCGGATTCGTCGGCTTTCTTCATTACAACGACGAAAGGAGAGCAGTTC 315
Query 300 CTAGAGGTCAAGCAAGCAGCAATAGTGGTTGCGGATGCGGTTCTAATACAACTGTCAAAG 359
||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 316 CTAGAGGTCAAGCAAGCAGCAATAGCGGTTGTGGCTGCGGTTCTAATACAACTGTCAAAG 375
Query 360 GTCCAATTATCGGAGGTCCATTTACGCTTATGAGCACAGAAAACAAGATAGTCACAGAGA 419
|||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 376 GTCCGATTATCGGAGGTCCGTTTACGCTTGTGAGCACAGAAAACAAGATAGTCACAGAGA 435
Query 420 ATGACTTTTGTGGTAAATGGGTTCTACTCTACTTTGGATACTCGTTTTCCCCGGATGTTG 479
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 436 ATGACTTTTGTGGTAAATGGGTTCTACTCTACTTTGGATACTCTTTTTCCCCGGATGTTG 495
Query 480 GACCCGAGCAATTGAAGATGATGTCCAAAGCAGTTGATAAACTAGAGTCTAAACATAACC 539
|||| |||||| | ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 496 GACCTGAGCAACTAAAGATGATGTCCAAAGCTGTTGATAAACTAGAGTCTAAACATAACG 555
Query 540 AGAAGATTCTGCCTGTCTTTGTCACTCTTGACCCTCAACGAGACACACCTTCTCATCTCC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 AGAAGATTCTGCCTGTCTTTGTCACTCTTGACCCTCAACGAGACACACCTTCTCATCTCC 615
Query 600 ACGCATACTTGAAAGAGTTTGATAGTAGAATACTAGGACTAACTGG-AGCTGCAAGTGCA 658
||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||
Sbjct 616 ACGCATACTTGAAAGAGTTTGATAGTAGAATACTAGGACTAACCGGGA-CTGCAAGTGCA 674
Query 659 ATGAGGCAAATGGCACAAGAGTATCGTGTCTACTTCAAGAAGGTTCAAGAAGACGGAGAC 718
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 675 ATGAGGCAAATGGCACAAGAGTATCGTGTCTACTTCAAGAAGGTTCAAGAGGACGGAGAA 734
Query 719 GATTATCTCGTTGATACTTCTCACAACATGTACTTGATGAATCCGAAGATGGAGATTGTG 778
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 735 GATTATCTCGTTGATACTTCTCACAACATGTACTTGATAAATCCGAAGATGGAGATTGTG 794
Query 779 AGGTGCTTTGGGGTTGAGTATAATCCAGACGAGCTCTCACAAGAGCTTCTTAAAGAAGTT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 AGGTGCTTTGGGGTTGAGTATAATCCAGACGAGCTCTCACAAGAGCTTCTTAAAGAAGTT 854
Query 839 ACATCTGTTTCACAATGACACATTTTGACCAAACACTAAAGAGAGAAACACTAGGATGCT 898
| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 855 GCTTCTGTTTCACAGTGACCCATTTTGACCAAACACTAAAGAGAGAAACACTAGGATGCT 914
Query 899 CTTTGATTGTTTTCTTCAATTGGTGAATTTTATTTC--GTCGATTTTGTT--T--GT-TA 951
||||||||||||||||||||| |||| |||| ||| | |||||||||| | || |
Sbjct 915 CTTTGATTGTTTTCTTCAATTCGTGA-TTTT-TTTAAAGACGATTTTGTTAATCCGTCTC 972
Query 952 --ATCCTTC------T-AA--TTAGATGGTAGATCCAGCAAAGTCGAAAAAATCCAAAAT 1000
|| ||| | || ||||||||||||||| |||||||||||||||||||||||
Sbjct 973 TTATTCTTGAAAAAATGAAAATTAGATGGTAGATCCTGCAAAGTCGAAAAAATCCAAAAT 1032
Query 1001 TTCGCATATAGTAATTTTTTATTCTTCAATGTTAttttttttttgttagagttgtttcct 1060
||| ||||||||||| ||||||||||||||||||||||| || |||||||||||||| |
Sbjct 1033 TTCCCATATAGTAATATTTTATTCTTCAATGTTATTTTTGTT--GTTAGAGTTGTTTC-T 1089
Query 1061 ttttacttattttcaaattttctttcaaagtttGTAACAT 1100
||| |||||||| ||||||||||||||| |||||||||||
Sbjct 1090 TTT-ACTTATTTACAAATTTTCTTTCAACGTTTGTAACAT 1128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54869195685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5