BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490757
Length=795
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39745.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 593 6e-169
> AT4G39745.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr4:18437806-18438665 FORWARD LENGTH=762
Length=762
Score = 593 bits (321), Expect = 6e-169
Identities = 383/413 (93%), Gaps = 4/413 (1%)
Strand=Plus/Plus
Query 385 CCCGAACCTCCGGTTTTCAACGTTAAGAAATTCGAGAAATCTCGTCATTTCGAGATCATG 444
|||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||
Sbjct 352 CCCGAACCTCCGGTTTTCAACGTTAAGAAACTAGAGAAATCTCGCCATTTCGAGATCATG 411
Query 445 TTGACATCCAAGAACCCAACCTCCACCATGTGGGTGACCTACAAAGGTCTAGTCTCTCTG 504
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 412 TTGACATCAAAGAACCCAACCTCCACCATGTGGGTGACCTACAAAGGTCTCGTCTCACTG 471
Query 505 ATGTACAAAAACAAGAACCTAGGCCAAGGGAATTTCCCGGAGCTGTCACTAGCCGTGTCC 564
| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 472 ACGTACAAAAACAAGAACCTAGGCCAAGGGAATTTCCCAGAGCTGTCATTAGCCGTGTCG 531
Query 565 GGATCCCATACGGTTAACCTAAAGCTAGA-AGGGTCCAAGAATGCGGCTCTGCTGCCGCC 623
|||||||||||||| ||||||||||| || ||| |||| ||| |||||| | ||||||||
Sbjct 532 GGATCCCATACGGTCAACCTAAAGCTGGATAGG-TCCATGAACGCGGCTGTTCTGCCGCC 590
Query 624 TGAAGTGGTTAGTTTGGTATTGACGATGGGGCTCA-ATGCGGGATTCGGCACGGGATTGG 682
||||||||||||||||||||||||||||||||| | ||||||| ||||||||||| ||||
Sbjct 591 TGAAGTGGTTAGTTTGGTATTGACGATGGGGCT-AGATGCGGGTTTCGGCACGGGCTTGG 649
Query 683 TGAAACGGGACAAGGAAGTGGCAGTGACATGTGATATTAAAGTAAAAGGATTATTAGATG 742
||||||| | |||||||||||| || |||||||| ||||||||||| |||||||||||||
Sbjct 650 TGAAACGAGCCAAGGAAGTGGCCGTAACATGTGACATTAAAGTAAATGGATTATTAGATG 709
Query 743 CGCAGAAGGTTGAGATTGTGTCGGAGAGTTGTGAGAGTGAGTTCATTAAATAA 795
|||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 710 CGCACAAGGTTGAGATTGTGTCGGAGAGTTGTGAGAGTGAGTTCACTAAATAA 762
Score = 433 bits (234), Expect = 1e-120
Identities = 318/356 (89%), Gaps = 15/356 (4%)
Strand=Plus/Plus
Query 1 ATGGAGGGGCCACCGCTACCTCCG------ACCTCCACCTCCACCGGC---AATGACAAT 51
||||| |||||||||||||||||| ||||||||||||||| | |||||||||
Sbjct 1 ATGGACGGGCCACCGCTACCTCCGACCTCTACCTCCACCTCCACCTCCATTAATGACAAT 60
Query 52 GAAAACAAAACCGGTAATGCTTCTTCTACGTGGCATCGTCCCACCACCAGCCTCCCCCAA 111
|||||||| |||||||||| | |||||||||||||||||||||||| ||||||||| |||
Sbjct 61 GAAAACAAGACCGGTAATGATCCTTCTACGTGGCATCGTCCCACCAGCAGCCTCCCTCAA 120
Query 112 CTT-CCTTCATCTGGCTCCCAAGTTTCTTCACCTCCACAACATTTACGTAATCATTCTTT 170
|| ||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 -TTCCCTTCCTCTGCCTCCCAAGTTTCTTCACCTCCACAACATTTACGTAATCGTTCTTT 179
Query 171 AAATCTCTCCCCACACTTATTATCTTCTTctcctcctcctcctcctGATCCAATCCCAGC 230
||||||||||||||| ||| | ||||||| || ||||||||| |||||||||||||
Sbjct 180 GAATCTCTCCCCACACGTATCACCTTCTTCGCCGCCTCCTCCT---GATCCAATCCCAGA 236
Query 231 GATCGAGACCTACGTAGTGCAGGTTCCGAGGGATCAGGTCTATTGGACCCCTCCCCCGGA 290
||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||
Sbjct 237 GATCGAGACCTACGTAGTGCATGTTCCAAGGGATCAGGTCTATTGGATCCCTCCCCCGGA 296
Query 291 TAATGCAAGGATCGTCGAAAGACGCAGGAATAGCGAGCTGGGGAGAAATAATAAAA 346
||||||| |||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 297 TAATGCA-GGATCGTCGAAAGACGCAGGAATAGCGATCCGGGGAGAAATAATAAAA 351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38680293190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5