BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490762
Length=1109
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39780.1 | Symbols: | Integrase-type DNA-binding superfamil... 1550 0.0
> AT4G39780.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr4:18457957-18459180 REVERSE LENGTH=1224
Length=1224
Score = 1550 bits (839), Expect = 0.0
Identities = 1029/1114 (92%), Gaps = 40/1114 (4%)
Strand=Plus/Plus
Query 7 AAGATCCATGGCAACCATAGATATGTTCAATAGCAACACAGATTTCTCAGATCCTTTTCA 66
||||||||||||| |||||||||||||||||||| | || | |||||||||||||
Sbjct 140 AAGATCCATGGCAGCCATAGATATGTTCAATAGC-A-AC--A-----CAGATCCTTTTCA 190
Query 67 AGAAGAGCTCATGAAAGCACTTCAACCTTAT---TCCAACACTGGTTCTTCTTCTTCTTC 123
||||||||||||||||||||||||||||||| ||||||||| ||||||||| || |
Sbjct 191 AGAAGAGCTCATGAAAGCACTTCAACCTTATACCACCAACACTGATTCTTCTTC-TC--C 247
Query 124 TCCATCTCCGTATTCAAACACAGTCTTCGGTTTCAATCAAACCACACCTCTTGGTCTAAA 183
| | |||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 248 T--A----CGTATTCAAACACAGTCTTCGGTTTCAATCAAACCACATCTCTCGGTCTAAA 301
Query 184 CCAACTCACACCTTACCAAATCCACCAAATCCAAAACCAGATCAACCAGAGACGTAACAT 243
||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 302 CCAGCTCACACCTTACCAAATCCACCAAATCCAAAACCAGCTTAACCAGAGACGTAACAT 361
Query 244 AATCTCTCCAAATCTTGCCCCAAAGCCAGTCCCAATGAAGAACATGGCCACTCAGAAACT 303
||||||||||||||| ||||||||||| |||||||||||||||||| || ||||||||||
Sbjct 362 AATCTCTCCAAATCTAGCCCCAAAGCCTGTCCCAATGAAGAACATGACCGCTCAGAAACT 421
Query 304 TTATAGAGGAGTTAGACAAAGGCACTGGGGAAAATGGGTAGCTGAGATCCGTTTACCCAA 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 CTATAGAGGAGTTAGACAAAGGCACTGGGGAAAATGGGTAGCTGAGATCCGTTTACCCAA 481
Query 364 GAACAGGACCCGACTCTGGCTTGGAACTTTCGACACAGCTGAAGAAGCAGCCATGGCTTA 423
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 GAACCGGACCCGACTCTGGCTTGGAACTTTCGACACAGCTGAAGAAGCAGCCATGGCTTA 541
Query 424 CGATCTTGCTGCTTACAAGCTAAGAGGCGAGTTCGCGAGGCTTAATTTCCCACAATTCAG 483
|| || |||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 542 TGACCTAGCTGCTTACAAGCTAAGAGGCGAGTTCGCGAGACTTAATTTCCCACAGTTCAG 601
Query 484 ACACGAGGATGGATACTACGGAGGAGGTAGCTGCTTCAATCCTCTTCATTCCTCTGTTGA 543
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 602 ACACGAGGATGGATACTACGGAGGAGGTAGCTGTTTCAATCCTCTTCATTCCTCTGTCGA 661
Query 544 CGCAAAGCTCCAAGCGATTTGTCAGAGCTTGAGGAAAACAGAGGATGTTGATCTCCCCTG 603
|||||||||||||| |||||||||||||||||| |||||||||||| |||| ||||||||
Sbjct 662 CGCAAAGCTCCAAGAGATTTGTCAGAGCTTGAGAAAAACAGAGGATATTGACCTCCCCTG 721
Query 604 TTCTGAAACAGAGCTTTTCCCGCCAAAAACAGAGTATCAAGAAAGTGAATATGGGTTCTT 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 TTCTGAAACAGAGCTTTTCCCGCCAAAAACAGAGTATCAAGAAAGTGAATATGGGTTCTT 781
Query 664 GAGATCTGATGAGAATTCGTTTTCAGATGAGTCTCAGGTTGAATCTTCTTCGCCGGAATC 723
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 782 GAGATCTGATGAGAATTCGTTTTCAGATGAGTCTCATGTGGAATCTTCTTCGCCGGAATC 841
Query 724 TGGTCTTACTACGCTCTTGGA-TTTCTCGGATTCGGGGTTTGATGAGATTGGGAGTTTCG 782
|||| |||||||| ||||||| ||| |||||||| || ||||||||||||||||||||||
Sbjct 842 TGGTATTACTACGTTCTTGGACTTT-TCGGATTCTGGATTTGATGAGATTGGGAGTTTCG 900
Query 783 GTTTGGAGAAGTTTCCTTCTGTGGAGATTGATTGGGATGCGATTAGCAAATTGTCTGAAT 842
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 901 GGCTGGAGAAGTTTCCTTCTGTGGAGATTGATTGGGATGCGATTAGCAAATTGTCCGAAT 960
Query 843 CTTAAACCAAA-CAAAGACAAGACTTTTTCTTTTAGGAGTTTGTCTTTCAATTTCAGTGT 901
||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CTTAAAC-AAAGCAAAGAGAAGACTTTTTCTTTTAGGAGTTTGTCTTTCAATTTCAGTGT 1019
Query 902 CTTATAGTATTAATCTCTGCAACTGAAATTTTTAACAGTTGAGGAGAGGATCGTCTCTAG 961
|||||| || | |||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1020 CTTATATTAATC-TCTCTGCAACTGAAATTTTTAACAGTTGCGGAGAGAATCGTCTCTAG 1078
Query 962 GGTTTGTTTCTGTTGAAATCTTCCTCCATGTTTTGGTCTGACTGGTTTATGTCTTCtttt 1021
||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1079 GGTTTGTTTCT--------CTTCCTCCATGTTTTGGTCTGACTGGTTTATGTCTTTTTTT 1130
Query 1022 ttt-----A-CGTTCAAAAACCTTTGTCATTGACCAATCGGAGAAGATTCCATGTATTAT 1075
||| | | |||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1131 TTTTTTTGAACTTTCAAAAACCTTTGTCATTGACCAATCGGAGAAGTTTCCATGTATTCT 1190
Query 1076 CTTATCTTTAAATTTCTAATGAAGAATGTAAATT 1109
|| |||||||||||||||||||||||||||||||
Sbjct 1191 CTCATCTTTAAATTTCTAATGAAGAATGTAAATT 1224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54367190235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5