BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490767
Length=1596
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39820.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2135 0.0
> AT4G39820.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:18476007-18477943 REVERSE LENGTH=1689
Length=1689
Score = 2135 bits (1156), Expect = 0.0
Identities = 1356/1450 (94%), Gaps = 23/1450 (2%)
Strand=Plus/Plus
Query 130 GAAGCGACGACATTCGAATTAGCCTCATCACAAGTCACATCCGTCGCCGATCTACCACCG 189
||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 137 GAACCGACGGCATTCGAATTAGCCTCATCCCAAGTCACATCCGTCGCCGATCTACCACCG 196
Query 190 GAACGATTCAATTCGCTCGACGAATTGACCCACGATCTCGGCTCGCTCCACGAGCTTTCG 249
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 197 GAACGATTCAATTCGCTCGACGAATTAACACACGATCTCGGCTCGCTCCACGAGCTTTCG 256
Query 250 ACCCGTGGCTCATGGCAAGCGATCCTCGAGAAGATATCTCAAGCCAGAGCTCTCTTTCTC 309
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 257 ACCCGTGGCTCATGGCAAGCGATCCTCGAGAAGATATCTCAAGCCAGAGCTCTCTTCCTC 316
Query 310 CTCACAAAGCCTCACGAGCATCTCACTTATCTCACTTACCAAGTTATGGCTCTCGCGAAG 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 CTCACAAAGCCTCACGAGCATCTCACTTATCTCACTTACCAAGTTATGGCTCTCGCGAAG 376
Query 370 CTTCGTCGCTCCGATGAAGCTGCTCATGAGCTTAATTCTTTGCACGATTTCGACGGGACG 429
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 377 CTTCGTCGCTCCGATGAAGCTTCTCATGAGCTTAATTCCTTGCACGATTTCGACGGGACG 436
Query 430 CATTACAGGTACGAATCGTTCCCTGAGATCTACCCTAATCGGAGAGGATCGATGGTTCCT 489
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 437 CATTACAGGTACGAATCGTTCCCTGAGATTTACCCTAATCGGAGAGGATCTATGGTTCCT 496
Query 490 TTCTCTTTACGATGGCTCTACGCTTTGATCCCGACTAAGCTTGGTAATCGTCAGGAAGGG 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 TTCTCTTTACGATGGCTCTACGCTTTGATCCCGACTAAGCTTGGTAATCGTCAGGAAGGG 556
Query 550 TTAGATCGGTTATACGTTTTGCTTGACTTTGTTCGAGATCGAATTAGAGAGAAAGAATCT 609
|||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 557 TTAGATCGTTTATATGTTTTGCTTGACTTTGTTCGAGATCGAATCAGAGAGAAAGAATCT 616
Query 610 CAGAGTTTAGATG-GTTCTGTGGAATTGTGGAAGAAAAGAGAGACCTTTGTGATGAATTG 668
||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 617 CAGAGTTTAGA-GAGTTCTGTGGAATTGTGGAAGAAAAGAGAGACATTTGTGATGAATTG 675
Query 669 CTTGCTAGGGTTTCATTTAGGTCACAAGGAATTTGGGGTATCTTTGGATTTGATGAAGGA 728
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 676 CTTGCTAGGGTTTCATTTAGGTCACAAGGAATTTGGGGTGTCTTTGGATTTGATGAAGGA 735
Query 729 ATTGAT-AACTCGTGATCCGTTAGACCCGGTTTTGATTTCGAAGCTAGGTTCTGTTCAGA 787
|||||| || ||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 736 ATTGATCAA-TCGTGATCCGTTAGACCCGGTTTTGATTTCGAAACTAGGGTCTGTTCAGA 794
Query 788 TGCAGTTTGGTGATATAGAAGGAGCTAAAACTACGTTTGATCGGGTCGAGAAGATGTTGA 847
|||||||||||||| |||||||||||||||||||||||||| | || |||||||||||||
Sbjct 795 TGCAGTTTGGTGATGTAGAAGGAGCTAAAACTACGTTTGATAGAGTTGAGAAGATGTTGA 854
Query 848 ATGAAGGAAAGAGCAATGGGTTATTGAATGAGATACAGTTCAAGAATCTTGTGGGGAGGA 907
||||||||||||||||||| |||||||| |||||||||||||| |||||||| || ||||
Sbjct 855 ATGAAGGAAAGAGCAATGGTTTATTGAACGAGATACAGTTCAACAATCTTGTTGGTAGGA 914
Query 908 ATAAGGCTTTGGTTCATGTTGTGGCAAAGGACTATGTTTCTGCTGTGAGAGAGTATGACA 967
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 ATAAGGCTTTGGTTTATGTTGTGGCAAAGGACTATGTTTCTGCTGTGAGAGAGTATGACA 974
Query 968 AATGCATTGAAAGGGATAACTCGGATATTATTGCTGTCAACAATAAGGCTCTTTGTTTGA 1027
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 975 AATGCATTGAAAGGGATAACTCTGATATTATCGCTGTCAACAATAAGGCTCTTTGTTTGA 1034
Query 1028 TGTACTTGAGAGATCTATCGGATGCGATTAAGGTGATGGAAAGTGCACTGGAGAGAGTGC 1087
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1035 TGTACTTGAGAGATCTATCGGATGCGATTAAGGTGATGGAAAGTGCATTGGAGAGAGTGC 1094
Query 1088 CAACCGCGGCTTTGAACGAGAGCTTGGTGGTGAACTTGTGTAGTATGTATGAGTTGGCTT 1147
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1095 CAACCGCGGCTTTGAACGAGAGCTTGGTGGTGAATTTGTGTAGTATGTATGAGTTGGCTT 1154
Query 1148 ATGTTAATCACACCGATGTCAAGCGGACGTTGAACAATTGGATTGCGCGTGTTGCTCCTG 1207
|||||||||| || ||||| ||||||||||| |||||||||||||| |||||||||||||
Sbjct 1155 ATGTTAATCATACTGATGTTAAGCGGACGTTAAACAATTGGATTGCACGTGTTGCTCCTG 1214
Query 1208 ATGACTTTGATTCATCTTGTACCAGAGTTTGAGGTTTTGTAT-CTGTTCTTCT-TCCATT 1265
|||||||||||||||||||||||||||||||||||||| || | | | |||
Sbjct 1215 ATGACTTTGATTCATCTTGTACCAGAGTTTGAGGTTTTC-ATTCCAAACAAAGGTA-ATT 1272
Query 1266 CTTGAAT---TTTCCCTTTTCTA-GATCAAAGATGTTGATCTTGCTGGGTTTGGCCTCAG 1321
| || ||| | ||| | ||| ||| | |||||| |||||||||||||||
Sbjct 1273 AGTCAAAGAGTTTATGTCTTCAATGATGAAACAA----ATCTTGGTGGGTTTGGCCTCAG 1328
Query 1322 CTGGAGTCTCTGTTGATGCGATTACCGGCTACAAGTTTGTTGTAGTTTTCTATTGT--AA 1379
|||||| |||||||| ||| |||||||||| ||| || ||||||||||||| |||| ||
Sbjct 1329 CTGGAGACTCTGTTGTTGCAATTACCGGCTTCAAATTCGTTGTAGTTTTCTGTTGTGTAA 1388
Query 1380 GCTAGCAAATGGTTTGTTGCCCCCAAACACTTGGTAACTTTCCTGCATTCGTTTTCGTCA 1439
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1389 GCTAGCAAATGGTTTGTTGCCCCCAAACACTTGGTAACTT-CCTGCATTCGTTTTC-TCA 1446
Query 1440 TATTCATCTTCTTATAACGTTTTTTGTTACACTTGCCGTTAACCACTAATGACGAATGTG 1499
||||||||||||||||||||||||| | || |||||||||||||||||||| |||||||
Sbjct 1447 TATTCATCTTCTTATAACGTTTTTT-TG-CATTTGCCGTTAACCACTAATGAAGAATGTG 1504
Query 1500 TGTTCTTTCAACTCTTCCTATGCACAGAGATTTTGGGTAA-TCAAGTATTTAAAGCCATG 1558
||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1505 TGTTCTTGCAACTCTTCCTATGCACAGAGATTTTGGGTAAATCAAATATTTAAAGCCATG 1564
Query 1559 TATTTTGAGT 1568
||||||||||
Sbjct 1565 TATTTTGAGT 1574
Score = 113 bits (61), Expect = 4e-24
Identities = 65/67 (97%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 1 ATGGATCCGGATTTACCCGAATCCGAAACCCGACCTGAATTCAATCCCTCTTCCACTGAT 60
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 44 ATGGATCCGGATTTACCCGAATCCGAAACCCGACCCGAATTCAATCCCTCCTCCACTGAT 103
Query 61 TCCACCG 67
|||||||
Sbjct 104 TCCACCG 110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78814855650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5