BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490769 Length=1870 Score E Sequences producing significant alignments: (Bits) Value AT4G39840.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2830 0.0 AT4G39838.1 | Symbols: | Potential natural antisense gene, loc... 2259 0.0 > AT4G39840.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 20719 Blast hits to 6096 proteins in 607 species: Archae - 22; Bacteria - 3243; Metazoa - 4364; Fungi - 2270; Plants - 237; Viruses - 128; Other Eukaryotes - 10455 (source: NCBI BLink). | chr4:18484901-18486814 FORWARD LENGTH=1914 Length=1914 Score = 2830 bits (1532), Expect = 0.0 Identities = 1792/1907 (94%), Gaps = 60/1907 (3%) Strand=Plus/Plus Query 1 CCTACCAAATACGAACAATCACATAAATACaaaaaaaTGCAGAATCATa-aaaaaaTTAG 59 |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 31 CCTACCAAATACAAACAATCACATAAATACAAAAAAATGCAGAATCATATAAAAAATTAG 90 Query 60 ACAAGTAGCAGAGAATCTGAAACATGACGGTGAGATTAAACAGTAGTAATAGTACATTGA 119 ||||||||||||||||||| |||||||||||| | |||||||||||| | |||||||||| Sbjct 91 ACAAGTAGCAGAGAATCTGCAACATGACGGTGCGGTTAAACAGTAGT-A-AGTACATTGA 148 Query 120 TATTATCAAAGGGACTGAATTAGTAAATTCTCTGGTCTCCATCTTCTCTATTATCGTTca 179 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 149 TATTATCAAAGGGACTGAATTAGTAAATTCTCTGGTCTCCATCTTCTCTCTTATCGTTCA 208 Query 180 cacacacacaaacactcatatataaacacatacatatgcacacTGTCACTAATGC-T-tc 237 ||||||||||||||||||||||| || || |||||||||||||||||||||||| | || Sbjct 209 CACACACACAAACACTCATATAT-AA-AC--ACATATGCACACTGTCACTAATGCTTCTC 264 Query 238 tctctctctctttctctTTTCCTATATATTGACAAGCTTGCGATCTCTCTTCGCAAGATC 297 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 265 TCTCTCTCTCTTTCTCTTTTCCTATATATTGACAAGCTTGCGATCTCTGTTCGCTAGATC 324 Query 298 TGTCTGAAACAGTGAGGGGATTCCTAGGTTTCAGAGCAAAGTAATGTCTCCACTCAAGGA 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 325 TGTCTGAAACAGTGAGGGGATTCCTAGGTTTCAGAGCAAAGTAATGTCTCCACTCAAGTA 384 Query 358 CTTGTGTTTTAGAAAGGTACTCTTGTTGTTGCTCTATTCCAGtctcttccttttctcttc 417 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 385 CTTGTGTTTTAGAAAGGTACTCTTGTTGTTGCTCTATTCCAGTCTCTTCCTATTCTCTTC 444 Query 418 ttcttctttctttGCCTCCTCAGTTGATGATCATGAGCTACAACGAATAGATCCTCATTT 477 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 445 TTCTTCTTTCTTTGCCTCATCAGTTGATGATCATGAGCTACAACGAATAGATCCTCATTT 504 Query 478 TCGAGTGAGAAGATTGTTGGTGAAAGATCTGGATTCAACTGGTGATGATGATGAATCCAA 537 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 505 CCGAGTGAGAAGATTGTTGGTGAAAGATCTGGATTCAACTGGTGATGATGATGAAACCAA 564 Query 538 TCTTCCTCCTCCTCCTAAGAAGAAGAAGCTTATTACTGGCTCTGTTtcatcatcatcatc 597 ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 565 TCTTCCTCCTCCTCCTAAGAAGAAGAAGCTTCTTACTGATTCTGTTTCATCATCATCATC 624 Query 598 atcatcTGGTACTAAGAAGAATCAAACCAAGCTCATTAAACCAATCTCTTCTTCGTCTTC 657 |||||||||||||||||||||||||||||||||| ||||||| |||||||| | ||||| Sbjct 625 ATCATCTGGTACTAAGAAGAATCAAACCAAGCTCCTTAAACCCATCTCTTC-T--TCTTC 681 Query 658 TTCCACCAAGAACCAAACTAAACTCGCCAAG---ACCTCCATGGGTACATCTCACAAACT 714 ||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||| Sbjct 682 TTCCACCAAGAACCAAACTAAACTCGCCAAGACCACCACCATGGGTACGTCTCACAAACT 741 Query 715 TGACTCCACCAAATCTTCTTCTAACACAACCAAGACCAGCTCCGAGCTCAAGAAGCTCAA 774 | ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 742 TAACTCCACAAAATCTTCTTCTAACACAACCAAGACCAGCTCTGAGCTCAAGAAGCTCAA 801 Query 775 TTCCGGAACAAAACCCACAAATTCTACTTCTTCAATCAAGAAATCAGCAGATCTATCCAA 834 ||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 802 TTCCGGAACAAAATCCACAAATTCTACTTCTTCGATCAAGAAATCAGCAGATCTGTCCAA 861 Query 835 ATCAAGCTCACCCAAAAACAAAACCACC--ACAA-----AA--TCCAAACTTTCTTCACC 885 |||||||||| ||||||||||||||||| | || || ||||||||||||||| Sbjct 862 ATCAAGCTCATCCAAAAACAAAACCACCATAAAACCCCCAAGTTCCAAACTTTCTTCA-- 919 Query 886 TCCTCCTTCAGAGAAGAAATCACCACCATCCTCAAAACCAGTGACCAAATCGAAACAA-C 944 ||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||| | Sbjct 920 -CCTCCATCAGAGAAGAAATCACAACCCTCCTCAAAACCAGTGACCAAATCGAAACAATC 978 Query 945 CGGAGAAAGAAATCAAACCATTCTGGCTCGACGACGAGGAAGACGAAGATTTCGTAAGCG 1004 | |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 979 C-GAGAAAGAAATCAAACCATTCTGGCTAGACGACGAAGAAGACGAAGATTTCGTAAGCG 1037 Query 1005 AATTCAGAGATCTACCAACAAAATTCCAAAGATCCCTAATCCCAGACCTAGAACGAATCT 1064 ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 1038 AATTCAGAGATCTACCAACAAGATTCCAAAGATCCCTAATCCCAGACCTAGAGCGAATCT 1097 Query 1065 CAACCACATCCAAAAACTACATCAACAAAGCCAACAAAGAGATCACCAAAAACTTCAAAC 1124 |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1098 CAACAACATCCAAAAACTACATCAACAAAGCCAACAAACAGATCACCAAAAACTTCAAAC 1157 Query 1125 CCTATTTCGGCAACAAATACGCACCAACCATCGCTTCCGTAGTCTCTTTCGTCTTCATCC 1184 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1158 CCTATTTCGGCAACAAATACGCACCAACCATAGCTTCCGTAGTCTCTTTCGTCTTCATCC 1217 Query 1185 TCGTCCCTCTACTCTTAGTCTCCCTCATTTTCAACAGATTCAAAGCTTACTTCTCACTCC 1244 |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 1218 TCGTCCCTCTACTCTTAGTCTCACTCATTTTCAACAGATTCAAAGCTTATTTCTCACTCC 1277 Query 1245 AGAAGATCCTAATCTTCATCCAAATCTACCTCTCGATCTACTTCTCAATCCTATGCCTCT 1304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1278 AGAAGATCCTAATCTTCATCCAAATCTACCTCTCGATCTACTTCTCAATCCTATGCCTCT 1337 Query 1305 CATCGCTCGTCACTGGAATCGAACCACTCAAGTTCCTCTACGCAACATCGAGCTCAACAT 1364 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1338 CATCGCTCGTCACCGGAATCGAACCACTCAAGTTTCTCTACGCAACATCGAGCTCAACAT 1397 Query 1365 ACGTTTGCTTGCAGATCCTGCAAACCCTAGGCTACGTCTTCTACCTCTTGCTTCTTCTCA 1424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1398 ACGTTTGCTTGCAGATCCTGCAAACCCTAGGCTACGTCTTCTACCTCTTGCTTCTTCTCA 1457 Query 1425 TGTACCTCGTTCTCGTCTTCTCTACGGATTGTGGTTTGGGCCTGAAAGTATTGGGCTTGG 1484 |||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||| Sbjct 1458 TGTACCTCGTTCTCGTCTTCTCCACGGATTGTGGTTTGGGCCTTAAGGTATTGGGCTTGG 1517 Query 1485 CGCAGACCTTCGTGGGCTTTGCTGTTGGTTTGCATTATTACGTGGCGGTGTTTCATAGGG 1544 |||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct 1518 CGCAGACCTTTGTGGGCTTTGCTGTAGGTCTGCATTATTACGTGGCGGTGTTTCATAGGG 1577 Query 1545 TGGTGCTTCGTCAGCCTCCGAAGACGAACTGGAAGATACACGGTGTTTATGCCACGTGTT 1604 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1578 TGGTGCTTCGTCAGCCTCCGAAGACGAACTGGAAGATACACGGTGTGTATGCCACGTGTT 1637 Query 1605 TTCTTTTGATTTGTCTGTTATCTAATGCTGAGAGGAGGAAGAAGGAGTATTTGGAAGAAG 1664 | ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 1638 TCCTTTTGATTTGTCTGTTATCTAATGCTGAGAGGAGGAAGAAAGAGTACTTGGAAGAAG 1697 Query 1665 GCGGTGACGAAGGGAAGAAAAATTGAAattttctttattttatttttctctatctttgta 1724 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1698 GCGGTGACGAAGGGAAGAAAAATTGAAATTTTCTTTATTTTATTCTTCTCTATCTTTGTA 1757 Query 1725 tttttatattttaaatttt-a-------G-C----T----G---AGAAATGCAATAGAA- 1763 ||||||||||||||||||| | | | | | ||||||||||||||| Sbjct 1758 TTTTTATATTTTAAATTTTGAAAAATTCGGCAAAATTTTAGCTGAGAAATGCAATAGAAA 1817 Query 1764 GAACAATTTACTGGTGGATGGTTGGAAACttttttttttttATATACTTCAATTGTATTT 1823 |||||||| ||||||||||||||||||||||||||| | | ||||||||||||||| Sbjct 1818 GAACAATT-ACTGGTGGATGGTTGGAAACTTTTTTTAA---A-A-ACTTCAATTGTATTT 1871 Query 1824 ATAATAAATAAATCGATAAATGTGGAATAAAAGTTCATAATCTCATT 1870 ||||||||| ||||||||||||||||||| |||||||||||||| Sbjct 1872 ATAATAAAT----CGATAAATGTGGAATAAAATTTCATAATCTCATT 1914 > AT4G39838.1 | Symbols: | Potential natural antisense gene, locus overlaps with AT4G39840 | chr4:18484875-18486365 REVERSE LENGTH=1491 Length=1491 Score = 2259 bits (1223), Expect = 0.0 Identities = 1378/1448 (95%), Gaps = 29/1448 (2%) Strand=Plus/Minus Query 1 CCTACCAAATACGAACAATCACATAAATACaaaaaaaTGCAGAATCATa-aaaaaaTTAG 59 |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1435 CCTACCAAATACAAACAATCACATAAATACAAAAAAATGCAGAATCATATAAAAAATTAG 1376 Query 60 ACAAGTAGCAGAGAATCTGAAACATGACGGTGAGATTAAACAGTAGTAATAGTACATTGA 119 ||||||||||||||||||| |||||||||||| | |||||||||||| | |||||||||| Sbjct 1375 ACAAGTAGCAGAGAATCTGCAACATGACGGTGCGGTTAAACAGTAGT-A-AGTACATTGA 1318 Query 120 TATTATCAAAGGGACTGAATTAGTAAATTCTCTGGTCTCCATCTTCTCTATTATCGTTca 179 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1317 TATTATCAAAGGGACTGAATTAGTAAATTCTCTGGTCTCCATCTTCTCTCTTATCGTTCA 1258 Query 180 cacacacacaaacactcatatataaacacatacatatgcacacTGTCACTAATGC-T-tc 237 ||||||||||||||||||||||| || || |||||||||||||||||||||||| | || Sbjct 1257 CACACACACAAACACTCATATAT-AA-AC--ACATATGCACACTGTCACTAATGCTTCTC 1202 Query 238 tctctctctctttctctTTTCCTATATATTGACAAGCTTGCGATCTCTCTTCGCAAGATC 297 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 1201 TCTCTCTCTCTTTCTCTTTTCCTATATATTGACAAGCTTGCGATCTCTGTTCGCTAGATC 1142 Query 298 TGTCTGAAACAGTGAGGGGATTCCTAGGTTTCAGAGCAAAGTAATGTCTCCACTCAAGGA 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1141 TGTCTGAAACAGTGAGGGGATTCCTAGGTTTCAGAGCAAAGTAATGTCTCCACTCAAGTA 1082 Query 358 CTTGTGTTTTAGAAAGGTACTCTTGTTGTTGCTCTATTCCAGtctcttccttttctcttc 417 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1081 CTTGTGTTTTAGAAAGGTACTCTTGTTGTTGCTCTATTCCAGTCTCTTCCTATTCTCTTC 1022 Query 418 ttcttctttctttGCCTCCTCAGTTGATGATCATGAGCTACAACGAATAGATCCTCATTT 477 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 TTCTTCTTTCTTTGCCTCATCAGTTGATGATCATGAGCTACAACGAATAGATCCTCATTT 962 Query 478 TCGAGTGAGAAGATTGTTGGTGAAAGATCTGGATTCAACTGGTGATGATGATGAATCCAA 537 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 961 CCGAGTGAGAAGATTGTTGGTGAAAGATCTGGATTCAACTGGTGATGATGATGAAACCAA 902 Query 538 TCTTCCTCCTCCTCCTAAGAAGAAGAAGCTTATTACTGGCTCTGTTtcatcatcatcatc 597 ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 901 TCTTCCTCCTCCTCCTAAGAAGAAGAAGCTTCTTACTGATTCTGTTTCATCATCATCATC 842 Query 598 atcatcTGGTACTAAGAAGAATCAAACCAAGCTCATTAAACCAATCTCTTCTTCGTCTTC 657 |||||||||||||||||||||||||||||||||| ||||||| ||||||||||| | | | Sbjct 841 ATCATCTGGTACTAAGAAGAATCAAACCAAGCTCCTTAAACCCATCTCTTCTTC-T-T-C 785 Query 658 TTCCACCAAGAACCAAACTAAACTCGCCAAGACCTCCA---TGGGTACATCTCACAAACT 714 |||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| Sbjct 784 TTCCACCAAGAACCAAACTAAACTCGCCAAGACCACCACCATGGGTACGTCTCACAAACT 725 Query 715 TGACTCCACCAAATCTTCTTCTAACACAACCAAGACCAGCTCCGAGCTCAAGAAGCTCAA 774 | ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 724 TAACTCCACAAAATCTTCTTCTAACACAACCAAGACCAGCTCTGAGCTCAAGAAGCTCAA 665 Query 775 TTCCGGAACAAAACCCACAAATTCTACTTCTTCAATCAAGAAATCAGCAGATCTATCCAA 834 ||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 664 TTCCGGAACAAAATCCACAAATTCTACTTCTTCGATCAAGAAATCAGCAGATCTGTCCAA 605 Query 835 ATCAAGCTCACCCAAAAACAAAACCACCACAAAA--------T-CCAAACTTTCTTCACC 885 |||||||||| |||||||||||||||||| |||| | |||||||||||||||| Sbjct 604 ATCAAGCTCATCCAAAAACAAAACCACCATAAAACCCCCAAGTTCCAAACTTTCTTCACC 545 Query 886 TCCTCCTTCAGAGAAGAAATCACCACCATCCTCAAAACCAGTGACCAAATCGAAACAA-C 944 ||| | ||||||||||||||| ||| |||||||||||||||||||||||||||||| | Sbjct 544 TCCA--T-CAGAGAAGAAATCACAACCCTCCTCAAAACCAGTGACCAAATCGAAACAATC 488 Query 945 CGGAGAAAGAAATCAAACCATTCTGGCTCGACGACGAGGAAGACGAAGATTTCGTAAGCG 1004 || ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 487 CG-AGAAAGAAATCAAACCATTCTGGCTAGACGACGAAGAAGACGAAGATTTCGTAAGCG 429 Query 1005 AATTCAGAGATCTACCAACAAAATTCCAAAGATCCCTAATCCCAGACCTAGAACGAATCT 1064 ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 428 AATTCAGAGATCTACCAACAAGATTCCAAAGATCCCTAATCCCAGACCTAGAGCGAATCT 369 Query 1065 CAACCACATCCAAAAACTACATCAACAAAGCCAACAAAGAGATCACCAAAAACTTCAAAC 1124 |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 368 CAACAACATCCAAAAACTACATCAACAAAGCCAACAAACAGATCACCAAAAACTTCAAAC 309 Query 1125 CCTATTTCGGCAACAAATACGCACCAACCATCGCTTCCGTAGTCTCTTTCGTCTTCATCC 1184 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 308 CCTATTTCGGCAACAAATACGCACCAACCATAGCTTCCGTAGTCTCTTTCGTCTTCATCC 249 Query 1185 TCGTCCCTCTACTCTTAGTCTCCCTCATTTTCAACAGATTCAAAGCTTACTTCTCACTCC 1244 |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 248 TCGTCCCTCTACTCTTAGTCTCACTCATTTTCAACAGATTCAAAGCTTATTTCTCACTCC 189 Query 1245 AGAAGATCCTAATCTTCATCCAAATCTACCTCTCGATCTACTTCTCAATCCTATGCCTCT 1304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 188 AGAAGATCCTAATCTTCATCCAAATCTACCTCTCGATCTACTTCTCAATCCTATGCCTCT 129 Query 1305 CATCGCTCGTCACTGGAATCGAACCACTCAAGTTCCTCTACGCAACATCGAGCTCAACAT 1364 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 128 CATCGCTCGTCACCGGAATCGAACCACTCAAGTTTCTCTACGCAACATCGAGCTCAACAT 69 Query 1365 ACGTTTGCTTGCAGATCCTGCAAACCCTAGGCTACGTCTTCTACCTCTTGCTTCTTCTCA 1424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 68 ACGTTTGCTTGCAGATCCTGCAAACCCTAGGCTACGTCTTCTACCTCTTGCTTCTTCTCA 9 Query 1425 TGTACCTC 1432 |||||||| Sbjct 8 TGTACCTC 1 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 92569804980 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5