BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490769
Length=1870
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39840.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2830 0.0
AT4G39838.1 | Symbols: | Potential natural antisense gene, loc... 2259 0.0
> AT4G39840.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 20719 Blast
hits to 6096 proteins in 607 species: Archae - 22; Bacteria
- 3243; Metazoa - 4364; Fungi - 2270; Plants - 237; Viruses
- 128; Other Eukaryotes - 10455 (source: NCBI BLink). |
chr4:18484901-18486814 FORWARD LENGTH=1914
Length=1914
Score = 2830 bits (1532), Expect = 0.0
Identities = 1792/1907 (94%), Gaps = 60/1907 (3%)
Strand=Plus/Plus
Query 1 CCTACCAAATACGAACAATCACATAAATACaaaaaaaTGCAGAATCATa-aaaaaaTTAG 59
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 31 CCTACCAAATACAAACAATCACATAAATACAAAAAAATGCAGAATCATATAAAAAATTAG 90
Query 60 ACAAGTAGCAGAGAATCTGAAACATGACGGTGAGATTAAACAGTAGTAATAGTACATTGA 119
||||||||||||||||||| |||||||||||| | |||||||||||| | ||||||||||
Sbjct 91 ACAAGTAGCAGAGAATCTGCAACATGACGGTGCGGTTAAACAGTAGT-A-AGTACATTGA 148
Query 120 TATTATCAAAGGGACTGAATTAGTAAATTCTCTGGTCTCCATCTTCTCTATTATCGTTca 179
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 149 TATTATCAAAGGGACTGAATTAGTAAATTCTCTGGTCTCCATCTTCTCTCTTATCGTTCA 208
Query 180 cacacacacaaacactcatatataaacacatacatatgcacacTGTCACTAATGC-T-tc 237
||||||||||||||||||||||| || || |||||||||||||||||||||||| | ||
Sbjct 209 CACACACACAAACACTCATATAT-AA-AC--ACATATGCACACTGTCACTAATGCTTCTC 264
Query 238 tctctctctctttctctTTTCCTATATATTGACAAGCTTGCGATCTCTCTTCGCAAGATC 297
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 265 TCTCTCTCTCTTTCTCTTTTCCTATATATTGACAAGCTTGCGATCTCTGTTCGCTAGATC 324
Query 298 TGTCTGAAACAGTGAGGGGATTCCTAGGTTTCAGAGCAAAGTAATGTCTCCACTCAAGGA 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 325 TGTCTGAAACAGTGAGGGGATTCCTAGGTTTCAGAGCAAAGTAATGTCTCCACTCAAGTA 384
Query 358 CTTGTGTTTTAGAAAGGTACTCTTGTTGTTGCTCTATTCCAGtctcttccttttctcttc 417
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 385 CTTGTGTTTTAGAAAGGTACTCTTGTTGTTGCTCTATTCCAGTCTCTTCCTATTCTCTTC 444
Query 418 ttcttctttctttGCCTCCTCAGTTGATGATCATGAGCTACAACGAATAGATCCTCATTT 477
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TTCTTCTTTCTTTGCCTCATCAGTTGATGATCATGAGCTACAACGAATAGATCCTCATTT 504
Query 478 TCGAGTGAGAAGATTGTTGGTGAAAGATCTGGATTCAACTGGTGATGATGATGAATCCAA 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 505 CCGAGTGAGAAGATTGTTGGTGAAAGATCTGGATTCAACTGGTGATGATGATGAAACCAA 564
Query 538 TCTTCCTCCTCCTCCTAAGAAGAAGAAGCTTATTACTGGCTCTGTTtcatcatcatcatc 597
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 565 TCTTCCTCCTCCTCCTAAGAAGAAGAAGCTTCTTACTGATTCTGTTTCATCATCATCATC 624
Query 598 atcatcTGGTACTAAGAAGAATCAAACCAAGCTCATTAAACCAATCTCTTCTTCGTCTTC 657
|||||||||||||||||||||||||||||||||| ||||||| |||||||| | |||||
Sbjct 625 ATCATCTGGTACTAAGAAGAATCAAACCAAGCTCCTTAAACCCATCTCTTC-T--TCTTC 681
Query 658 TTCCACCAAGAACCAAACTAAACTCGCCAAG---ACCTCCATGGGTACATCTCACAAACT 714
||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||
Sbjct 682 TTCCACCAAGAACCAAACTAAACTCGCCAAGACCACCACCATGGGTACGTCTCACAAACT 741
Query 715 TGACTCCACCAAATCTTCTTCTAACACAACCAAGACCAGCTCCGAGCTCAAGAAGCTCAA 774
| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 742 TAACTCCACAAAATCTTCTTCTAACACAACCAAGACCAGCTCTGAGCTCAAGAAGCTCAA 801
Query 775 TTCCGGAACAAAACCCACAAATTCTACTTCTTCAATCAAGAAATCAGCAGATCTATCCAA 834
||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 802 TTCCGGAACAAAATCCACAAATTCTACTTCTTCGATCAAGAAATCAGCAGATCTGTCCAA 861
Query 835 ATCAAGCTCACCCAAAAACAAAACCACC--ACAA-----AA--TCCAAACTTTCTTCACC 885
|||||||||| ||||||||||||||||| | || || |||||||||||||||
Sbjct 862 ATCAAGCTCATCCAAAAACAAAACCACCATAAAACCCCCAAGTTCCAAACTTTCTTCA-- 919
Query 886 TCCTCCTTCAGAGAAGAAATCACCACCATCCTCAAAACCAGTGACCAAATCGAAACAA-C 944
||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||| |
Sbjct 920 -CCTCCATCAGAGAAGAAATCACAACCCTCCTCAAAACCAGTGACCAAATCGAAACAATC 978
Query 945 CGGAGAAAGAAATCAAACCATTCTGGCTCGACGACGAGGAAGACGAAGATTTCGTAAGCG 1004
| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 979 C-GAGAAAGAAATCAAACCATTCTGGCTAGACGACGAAGAAGACGAAGATTTCGTAAGCG 1037
Query 1005 AATTCAGAGATCTACCAACAAAATTCCAAAGATCCCTAATCCCAGACCTAGAACGAATCT 1064
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1038 AATTCAGAGATCTACCAACAAGATTCCAAAGATCCCTAATCCCAGACCTAGAGCGAATCT 1097
Query 1065 CAACCACATCCAAAAACTACATCAACAAAGCCAACAAAGAGATCACCAAAAACTTCAAAC 1124
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1098 CAACAACATCCAAAAACTACATCAACAAAGCCAACAAACAGATCACCAAAAACTTCAAAC 1157
Query 1125 CCTATTTCGGCAACAAATACGCACCAACCATCGCTTCCGTAGTCTCTTTCGTCTTCATCC 1184
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1158 CCTATTTCGGCAACAAATACGCACCAACCATAGCTTCCGTAGTCTCTTTCGTCTTCATCC 1217
Query 1185 TCGTCCCTCTACTCTTAGTCTCCCTCATTTTCAACAGATTCAAAGCTTACTTCTCACTCC 1244
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1218 TCGTCCCTCTACTCTTAGTCTCACTCATTTTCAACAGATTCAAAGCTTATTTCTCACTCC 1277
Query 1245 AGAAGATCCTAATCTTCATCCAAATCTACCTCTCGATCTACTTCTCAATCCTATGCCTCT 1304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 AGAAGATCCTAATCTTCATCCAAATCTACCTCTCGATCTACTTCTCAATCCTATGCCTCT 1337
Query 1305 CATCGCTCGTCACTGGAATCGAACCACTCAAGTTCCTCTACGCAACATCGAGCTCAACAT 1364
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1338 CATCGCTCGTCACCGGAATCGAACCACTCAAGTTTCTCTACGCAACATCGAGCTCAACAT 1397
Query 1365 ACGTTTGCTTGCAGATCCTGCAAACCCTAGGCTACGTCTTCTACCTCTTGCTTCTTCTCA 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 ACGTTTGCTTGCAGATCCTGCAAACCCTAGGCTACGTCTTCTACCTCTTGCTTCTTCTCA 1457
Query 1425 TGTACCTCGTTCTCGTCTTCTCTACGGATTGTGGTTTGGGCCTGAAAGTATTGGGCTTGG 1484
|||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 1458 TGTACCTCGTTCTCGTCTTCTCCACGGATTGTGGTTTGGGCCTTAAGGTATTGGGCTTGG 1517
Query 1485 CGCAGACCTTCGTGGGCTTTGCTGTTGGTTTGCATTATTACGTGGCGGTGTTTCATAGGG 1544
|||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1518 CGCAGACCTTTGTGGGCTTTGCTGTAGGTCTGCATTATTACGTGGCGGTGTTTCATAGGG 1577
Query 1545 TGGTGCTTCGTCAGCCTCCGAAGACGAACTGGAAGATACACGGTGTTTATGCCACGTGTT 1604
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1578 TGGTGCTTCGTCAGCCTCCGAAGACGAACTGGAAGATACACGGTGTGTATGCCACGTGTT 1637
Query 1605 TTCTTTTGATTTGTCTGTTATCTAATGCTGAGAGGAGGAAGAAGGAGTATTTGGAAGAAG 1664
| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1638 TCCTTTTGATTTGTCTGTTATCTAATGCTGAGAGGAGGAAGAAAGAGTACTTGGAAGAAG 1697
Query 1665 GCGGTGACGAAGGGAAGAAAAATTGAAattttctttattttatttttctctatctttgta 1724
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1698 GCGGTGACGAAGGGAAGAAAAATTGAAATTTTCTTTATTTTATTCTTCTCTATCTTTGTA 1757
Query 1725 tttttatattttaaatttt-a-------G-C----T----G---AGAAATGCAATAGAA- 1763
||||||||||||||||||| | | | | | |||||||||||||||
Sbjct 1758 TTTTTATATTTTAAATTTTGAAAAATTCGGCAAAATTTTAGCTGAGAAATGCAATAGAAA 1817
Query 1764 GAACAATTTACTGGTGGATGGTTGGAAACttttttttttttATATACTTCAATTGTATTT 1823
|||||||| ||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct 1818 GAACAATT-ACTGGTGGATGGTTGGAAACTTTTTTTAA---A-A-ACTTCAATTGTATTT 1871
Query 1824 ATAATAAATAAATCGATAAATGTGGAATAAAAGTTCATAATCTCATT 1870
||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1872 ATAATAAAT----CGATAAATGTGGAATAAAATTTCATAATCTCATT 1914
> AT4G39838.1 | Symbols: | Potential natural antisense gene, locus
overlaps with AT4G39840 | chr4:18484875-18486365 REVERSE
LENGTH=1491
Length=1491
Score = 2259 bits (1223), Expect = 0.0
Identities = 1378/1448 (95%), Gaps = 29/1448 (2%)
Strand=Plus/Minus
Query 1 CCTACCAAATACGAACAATCACATAAATACaaaaaaaTGCAGAATCATa-aaaaaaTTAG 59
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1435 CCTACCAAATACAAACAATCACATAAATACAAAAAAATGCAGAATCATATAAAAAATTAG 1376
Query 60 ACAAGTAGCAGAGAATCTGAAACATGACGGTGAGATTAAACAGTAGTAATAGTACATTGA 119
||||||||||||||||||| |||||||||||| | |||||||||||| | ||||||||||
Sbjct 1375 ACAAGTAGCAGAGAATCTGCAACATGACGGTGCGGTTAAACAGTAGT-A-AGTACATTGA 1318
Query 120 TATTATCAAAGGGACTGAATTAGTAAATTCTCTGGTCTCCATCTTCTCTATTATCGTTca 179
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1317 TATTATCAAAGGGACTGAATTAGTAAATTCTCTGGTCTCCATCTTCTCTCTTATCGTTCA 1258
Query 180 cacacacacaaacactcatatataaacacatacatatgcacacTGTCACTAATGC-T-tc 237
||||||||||||||||||||||| || || |||||||||||||||||||||||| | ||
Sbjct 1257 CACACACACAAACACTCATATAT-AA-AC--ACATATGCACACTGTCACTAATGCTTCTC 1202
Query 238 tctctctctctttctctTTTCCTATATATTGACAAGCTTGCGATCTCTCTTCGCAAGATC 297
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1201 TCTCTCTCTCTTTCTCTTTTCCTATATATTGACAAGCTTGCGATCTCTGTTCGCTAGATC 1142
Query 298 TGTCTGAAACAGTGAGGGGATTCCTAGGTTTCAGAGCAAAGTAATGTCTCCACTCAAGGA 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1141 TGTCTGAAACAGTGAGGGGATTCCTAGGTTTCAGAGCAAAGTAATGTCTCCACTCAAGTA 1082
Query 358 CTTGTGTTTTAGAAAGGTACTCTTGTTGTTGCTCTATTCCAGtctcttccttttctcttc 417
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1081 CTTGTGTTTTAGAAAGGTACTCTTGTTGTTGCTCTATTCCAGTCTCTTCCTATTCTCTTC 1022
Query 418 ttcttctttctttGCCTCCTCAGTTGATGATCATGAGCTACAACGAATAGATCCTCATTT 477
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TTCTTCTTTCTTTGCCTCATCAGTTGATGATCATGAGCTACAACGAATAGATCCTCATTT 962
Query 478 TCGAGTGAGAAGATTGTTGGTGAAAGATCTGGATTCAACTGGTGATGATGATGAATCCAA 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 961 CCGAGTGAGAAGATTGTTGGTGAAAGATCTGGATTCAACTGGTGATGATGATGAAACCAA 902
Query 538 TCTTCCTCCTCCTCCTAAGAAGAAGAAGCTTATTACTGGCTCTGTTtcatcatcatcatc 597
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 901 TCTTCCTCCTCCTCCTAAGAAGAAGAAGCTTCTTACTGATTCTGTTTCATCATCATCATC 842
Query 598 atcatcTGGTACTAAGAAGAATCAAACCAAGCTCATTAAACCAATCTCTTCTTCGTCTTC 657
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||| | | |
Sbjct 841 ATCATCTGGTACTAAGAAGAATCAAACCAAGCTCCTTAAACCCATCTCTTCTTC-T-T-C 785
Query 658 TTCCACCAAGAACCAAACTAAACTCGCCAAGACCTCCA---TGGGTACATCTCACAAACT 714
|||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||
Sbjct 784 TTCCACCAAGAACCAAACTAAACTCGCCAAGACCACCACCATGGGTACGTCTCACAAACT 725
Query 715 TGACTCCACCAAATCTTCTTCTAACACAACCAAGACCAGCTCCGAGCTCAAGAAGCTCAA 774
| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 724 TAACTCCACAAAATCTTCTTCTAACACAACCAAGACCAGCTCTGAGCTCAAGAAGCTCAA 665
Query 775 TTCCGGAACAAAACCCACAAATTCTACTTCTTCAATCAAGAAATCAGCAGATCTATCCAA 834
||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 664 TTCCGGAACAAAATCCACAAATTCTACTTCTTCGATCAAGAAATCAGCAGATCTGTCCAA 605
Query 835 ATCAAGCTCACCCAAAAACAAAACCACCACAAAA--------T-CCAAACTTTCTTCACC 885
|||||||||| |||||||||||||||||| |||| | ||||||||||||||||
Sbjct 604 ATCAAGCTCATCCAAAAACAAAACCACCATAAAACCCCCAAGTTCCAAACTTTCTTCACC 545
Query 886 TCCTCCTTCAGAGAAGAAATCACCACCATCCTCAAAACCAGTGACCAAATCGAAACAA-C 944
||| | ||||||||||||||| ||| |||||||||||||||||||||||||||||| |
Sbjct 544 TCCA--T-CAGAGAAGAAATCACAACCCTCCTCAAAACCAGTGACCAAATCGAAACAATC 488
Query 945 CGGAGAAAGAAATCAAACCATTCTGGCTCGACGACGAGGAAGACGAAGATTTCGTAAGCG 1004
|| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 487 CG-AGAAAGAAATCAAACCATTCTGGCTAGACGACGAAGAAGACGAAGATTTCGTAAGCG 429
Query 1005 AATTCAGAGATCTACCAACAAAATTCCAAAGATCCCTAATCCCAGACCTAGAACGAATCT 1064
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 428 AATTCAGAGATCTACCAACAAGATTCCAAAGATCCCTAATCCCAGACCTAGAGCGAATCT 369
Query 1065 CAACCACATCCAAAAACTACATCAACAAAGCCAACAAAGAGATCACCAAAAACTTCAAAC 1124
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 368 CAACAACATCCAAAAACTACATCAACAAAGCCAACAAACAGATCACCAAAAACTTCAAAC 309
Query 1125 CCTATTTCGGCAACAAATACGCACCAACCATCGCTTCCGTAGTCTCTTTCGTCTTCATCC 1184
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 308 CCTATTTCGGCAACAAATACGCACCAACCATAGCTTCCGTAGTCTCTTTCGTCTTCATCC 249
Query 1185 TCGTCCCTCTACTCTTAGTCTCCCTCATTTTCAACAGATTCAAAGCTTACTTCTCACTCC 1244
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 248 TCGTCCCTCTACTCTTAGTCTCACTCATTTTCAACAGATTCAAAGCTTATTTCTCACTCC 189
Query 1245 AGAAGATCCTAATCTTCATCCAAATCTACCTCTCGATCTACTTCTCAATCCTATGCCTCT 1304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 AGAAGATCCTAATCTTCATCCAAATCTACCTCTCGATCTACTTCTCAATCCTATGCCTCT 129
Query 1305 CATCGCTCGTCACTGGAATCGAACCACTCAAGTTCCTCTACGCAACATCGAGCTCAACAT 1364
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 128 CATCGCTCGTCACCGGAATCGAACCACTCAAGTTTCTCTACGCAACATCGAGCTCAACAT 69
Query 1365 ACGTTTGCTTGCAGATCCTGCAAACCCTAGGCTACGTCTTCTACCTCTTGCTTCTTCTCA 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 ACGTTTGCTTGCAGATCCTGCAAACCCTAGGCTACGTCTTCTACCTCTTGCTTCTTCTCA 9
Query 1425 TGTACCTC 1432
||||||||
Sbjct 8 TGTACCTC 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92569804980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5