BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490773
Length=1634
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39870.1 | Symbols: | TLD-domain containing nucleolar prote... 2148 0.0
> AT4G39870.1 | Symbols: | TLD-domain containing nucleolar protein
| chr4:18501895-18504466 FORWARD LENGTH=1715
Length=1715
Score = 2148 bits (1163), Expect = 0.0
Identities = 1491/1636 (91%), Gaps = 76/1636 (5%)
Strand=Plus/Plus
Query 50 AAGG-aaaaaaaaGGTAA-AG-GAAAGGGATAAAGAGAGAGATGGTCTTCTTGTTTAGAA 106
|||| ||| ||||| || || || || || | || ||||||||||||||||||||||||
Sbjct 103 AAGGTAAAGGAAAGG-AATAGTGAGAGAGAGAGAGGGAGAGATGGTCTTCTTGTTTAGAA 161
Query 107 CTTGTTGTTTCCAATTTTTCTAAGAATGGCGTTTTAGGTAAATGATCACAGCTTAATTAC 166
| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 162 CATGTTGTTTCCAATTATTCTAAGAATGGCGTTTTAGGTAAATGATCACAGCTT-ATTAC 220
Query 167 AGATGGAAGAGAAGCTGACTCAATTTGTGGTTTAGATTTTTCAAAGAGGATCGTGTGGAA 226
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 221 AGATGGAAGAGAAGCTGACTCAATTTGTGGTTTAGATTTGTCAAAGAGGATCGTGTGGAA 280
Query 227 TCTGAAAGTTTTTAA-TTTCACTAAAAATAGGA-TAGAGTTAAAAAGGAGGAAG-AGGAA 283
|||||||||||| || ||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 281 TCTGAAAGTTTTCAATTTTCACTAAAAATAGGATTAGAGTTAAAAAGGAGGAAGAAGAAA 340
Query 284 TGGGGAAACACAAATCTTTCAGAAGCAAAGCAGTGCACTTTGTCACCGATCTCACCGCTG 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 TGGGGAAACACAAATCTTTCAGAAGCAAAGCAGTGCACTTTGTCACCGATCTCACCGCTG 400
Query 344 GTCTTCTTAATCCCATCTCTGATAAACCCTCCTCCG---------CTCGTCCTCTTCCGG 394
|||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 401 GTCTTCTTAATCCCATCTCTGATAAACCCTCCTCCGCTCATCCTCCTCCTCCTCTTCCGG 460
Query 395 ATGAGGAAGATGAGTCTAAGAGAAATCAGCTAGAGTCTGTC-ACTGCAGAGCAGCCTAAG 453
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 461 ATGAGGAAGATGAGTCTAAGAGAAATCAGCTAGAGTCT-ACAACTGCAGAGCAGCCTAAG 519
Query 454 GATTTGGTAGACGAACCAGACACTTCTTCTTTCTCTGCATTCCTTGGTTCACTGTTATCT 513
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 GATTTGGTTGACGAACCAGACACTTCTTCTTTCTCTGCATTCCTTGGTTCACTGTTATCT 579
Query 514 TCAGATCCCAAGGACAAAAAGAACGATCAGGAT-CAGGAGGACgaagaaga--a-gaaga 569
||||||||||| ||||||| ||| ||||||||| || |||||||||||||| | |||||
Sbjct 580 TCAGATCCCAAAGACAAAAGGAAGGATCAGGATCCA-GAGGACGAAGAAGACGAGGAAGA 638
Query 570 agac------gaagaTTCTGAGGCAGAAACAAGCGATACATCATCATCCTCCTCGGCCAA 623
|||| |||||||||||||||||||||||||||||||||||||| | || |||||
Sbjct 639 AGACGAAGAAGAAGATTCTGAGGCAGAAACAAGCGATACATCATCATCAT-CT--GCCAA 695
Query 624 TCCTACTAGAACAATGAAGGAGGCTACTA---GTGGTGCTGCAAAGAAGAGTTTTTTGTC 680
|||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 696 TCCTACTAGAACTATGAAGGAGACTACTAGTGGTGGTGCTGCAAAGAAGAGTTTTTTGTC 755
Query 681 TAAGTACAAACAGCATTTGAGGAACTTTTACCAGGCTGTTAAGTTTCCCGGGGTCAAGGA 740
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 756 CAAGTACAAACAGCATTTTAGGAATTTTTACCAGGCTGTTAAGTTTCCCGGGGTCAAGGA 815
Query 741 GCGGAAGGGAAATTCTGATGTGACACCAGATGCTGAAGAGACTG---AGTATGATGGCTT 797
||| ||||||||||||||||||| |||||||| ||| ||||||| | |||||||||||
Sbjct 816 GCGAAAGGGAAATTCTGATGTGATACCAGATGATGAGGAGACTGAATATTATGATGGCTT 875
Query 798 GGAGATGAAGCCGATGCAGAATAATAATGTCAAAGAAGAAGCAACA--A-TAGTGCAAGG 854
||||||||||||||||||||||||||||||||||| |||| ||| | |||||||||
Sbjct 876 AGAGATGAAGCCGATGCAGAATAATAATGTCAAAGAGGAAGTGACAGTAGTAGTGCAAGC 935
Query 855 AATTATACCTGAAATTTCAGAGCCCTCTTTGCTTTTGTCGGACCAGTCAAGATG-TTCCT 913
||||||||||||||||||||| |||||||||||||| ||||| ||||| ||| | | |||
Sbjct 936 AATTATACCTGAAATTTCAGAACCCTCTTTGCTTTTATCGGAGCAGTCTAGACGCTCCCT 995
Query 914 TATATACTTCACTTCCTGCTCTTGTTCAAGGGAGGAAATGGATATTGCTTTATAGTACAT 973
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 996 T-TATACTTCACTTCCTGCGCTTGTTCAAGGGAGGAAATGGATATTGCTTTATAGTACAT 1054
Query 974 GGAGGCATGGTATATCACTATCTACGCTGTACAGGAAAAGCCTTCTCTGGCCTGGTCTCA 1033
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |
Sbjct 1055 GGAGGCATGGTATATCACTATCCACGCTATACAGGAAAAGCCTTCTCTGGCCAGGTCTTA 1114
Query 1034 GCTTACTGGTTGTTGGAGACAGAAAAGGTTCAGTTTTTGGTGGTCTTGTTGAGGCACCTT 1093
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1115 GCCTACTGGTTGTTGGAGACAGAAAAGGTTCGGTTTTTGGTGGTCTTGTTGAGGCACCTT 1174
Query 1094 TGATACCAACTGATAAAAAGTATCAGGGAACCAATAGTACATTTGTTTTCACAAATAAGT 1153
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 1175 TGATACCAACTGATAAAAAGTATCAGGGAACCAACAGTACCTTTGTTTTCACAAATAAAT 1234
Query 1154 CAGGACAACCCACAATATACCGTCCCACAGGCGCAAATCGATTCTACACTTTATGCTCCA 1213
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1235 CAGGACAACCCACAATATACCGTCCCACAGGCGCAAATCGGTTCTACACTTTATGCTCCA 1294
Query 1214 AGGAATTCCTAGCTCTAGGCGGTGGTGGACGGTTTGCTCTCTATCTAGACAGTGAGCTGC 1273
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 AGGAATTCCTAGCTCTGGGCGGTGGTGGACGGTTTGCTCTCTATCTAGACAGTGAGCTGC 1354
Query 1274 TAAGTGGATCAAGTGCTTACTCAGAGACATATGGGAACTCTTGTCTCGCAAACTCTCAGG 1333
|||| ||||| || |||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1355 TAAGCGGATCGAGCGCTTACTCAGAGACGTATGGGAACTCTTGTCTCGCAGACTCTCAGG 1414
Query 1334 ACTTTGATGTTAAGGAAGTGGAGCTATGGGGATTTGTGTATGGCTCAAAGTATGATGAGA 1393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1415 ACTTTGATGTTAAGGAAGTGGAGCTATGGGGATTTGTGTATGGCTCAAAGTATGATGAGA 1474
Query 1394 TTCTAGCTCACAGCAAAACAATGGAGCCTGGTCTTTGCAGATGGTCATGATCATTATAAA 1453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475 TTCTAGCTCACAGCAAAACAATGGAGCCTGGTCTTTGCAGATGGTCATGATCATTATAAA 1534
Query 1454 GAAAAACGAAATGAATTCAAGTGAGAGATTCG-CTTCTT-TTGTTGTTGTTATTGT---- 1507
||||| | |||||||||||| ||||| |||| ||| || ||||||||||| ||||
Sbjct 1535 GAAAACCCAAATGAATTCAACTGAGA--TTCGTCTTTTTGTTGTTGTTGTTGTTGTTGTT 1592
Query 1508 --A-AA-TCTGTAGTAAAAGAAATGTTGTTGTCTTTACCTTTGTAACT-GGCTAAAATCA 1562
| || ||||||||||||||||| |||||||||| |||||| |||||||||||
Sbjct 1593 GTATAAATCTGTAGTAAAAGAAATCTTGTTGTCTT-------GTAACTTGGCTAAAATCA 1645
Query 1563 CTTCTCTGTTACTCTCGCTG----GTAATGATGATTTTTGGGACTGAAATAACAAAAATA 1618
| | | |||||||||| || |||||||||||||| | | || |||||||| ||
Sbjct 1646 CATATATGTTACTCTCTCTCACTTGTAATGATGATTTT-G--A---AA-TAACAAAA-TA 1697
Query 1619 AAACGACCTATTAGGC 1634
|||| |||||||||||
Sbjct 1698 AAACCACCTATTAGGC 1713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80722476360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5