BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490774
Length=608
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39880.1 | Symbols: | Ribosomal protein L23/L15e family pro... 889 0.0
> AT4G39880.1 | Symbols: | Ribosomal protein L23/L15e family protein
| chr4:18504537-18505338 FORWARD LENGTH=802
Length=802
Score = 889 bits (481), Expect = 0.0
Identities = 580/624 (93%), Gaps = 21/624 (3%)
Strand=Plus/Plus
Query 1 TTCATTTCTGACCTAAAA----A-CTCCGATTTCAAAATGGGGAGTAGATTGGGAGGACG 55
|||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||
Sbjct 28 TTCATTTCTGACCTAAAAGCTCAGCTCCGATTTGAAAATGGGGAGTAGATTGGGAGGACG 87
Query 56 AGTGGTTCATTTCGCGAATCTTCCGATTAAGCTTCTGATGCCTGCAAAGCTCACGAACAT 115
||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 88 AGTGGTTCATTTCGCGAATCTTCCGATTAAGCTTCTGATGCCTGCGAAGCTGACCAACAT 147
Query 116 TCACGAATTCGCGTTGAAAACGATCCCTTCCGCGTCGAAGATCGAGATCAAACGAGTCCT 175
|||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 148 TCACGAATTCGCGTTGAAAACGATTCCTTCCGCGTCCAAGATCGAGATCAAGCGAGTCCT 207
Query 176 CGAGTCACTCTACGGATTCGATGTGGAGAAGGTGAATACACTAAACATGGATGGGAAGAA 235
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 208 GGAGTCGCTCTACGGATTCGATGTGGAGAAGGTGAATACTTTAAACATGGATGGGAAGAA 267
Query 236 GAAGAAGCGTGGAGGTTTGTTGATAGCGAAAGCTGATTACAAGAAGGCTTACGTCACGCT 295
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 GAAGAAGCGTGGTGGTTTGTTGATAGCGAAAGCTGATTACAAGAAGGCTTACGTCACGCT 327
Query 296 ACGTAGCCCTTTGTCGATTTCTAGGGATTTGTTTCCGGTGAAGTTTATCGAGGAAGATAG 355
|||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 328 ACGTAGTCCATTGTCGATTTCTAGGGATTTGTTTCCGGTGAAGTATATCGAGGAAGATAG 387
Query 356 GAAGAGTAAAGTGAAAGGATCTAGCTTTGTTGAGGAAGAAGATGATAAGAAGAGTCATTG 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 GAAGAGTAAAGTGAAAGGATCTAGCTTTGTTGAGGAAGAAGATGATAAGAAGAGTCATTG 447
Query 416 GCTTGATCGCAAGGAGAAGAGGGAGATCGGCGGTTATGGAAAAGGTAAAGGTCGTCGTGG 475
||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||| ||
Sbjct 448 GCTTGATCGTAAGGAGAAGAGGGAGATTGGTGGTTATGGTAAAGGTAAAGGTCGTCGAGG 507
Query 476 AGGTGAAAGGGATA-CTTCTCCGACGAG-GGCTGGTGCGGCGGCGGCGGCGGGGACGGCC 533
|||||||||| || || |||||||||| || |||||| |||||||||| || ||||||
Sbjct 508 TGGTGAAAGGGCTAACT-CTCCGACGAGAGG-TGGTGCTGCGGCGGCGG-GG--ACGGCC 562
Query 534 AAGTTTCCATGGAGCAACATGAGATTTGTTGGTAAGTAGGGTTTATGAG--GAT------ 585
||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 563 AAGTTTCCATGGAGCAACATGAGATTTGTTGGTAAGTAGGGTTTATGAGCAGATTATGAT 622
Query 586 CTGGG-TTTGTGTTTCTTTAGCTA 608
||||| ||||||||||||||||||
Sbjct 623 CTGGGGTTTGTGTTTCTTTAGCTA 646
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29286507701
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5