BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490777
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39910.1 | Symbols: ATUBP3, UBP3 | ubiquitin-specific protea... 2475 0.0
AT2G22310.2 | Symbols: UBP4 | ubiquitin-specific protease 4 | c... 1038 0.0
> AT4G39910.1 | Symbols: ATUBP3, UBP3 | ubiquitin-specific protease
3 | chr4:18511575-18514338 REVERSE LENGTH=1598
Length=1598
Score = 2475 bits (1340), Expect = 0.0
Identities = 1482/1547 (96%), Gaps = 24/1547 (2%)
Strand=Plus/Plus
Query 1 CTCTTCTCTTCGGCTCCTTGGAAATCTGAATTATCCGATCGAATCGAACC-ATCGCAGAG 59
||||||||| ||||| ||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 62 CTCTTCTCTGAGGCTCGTTGGAAATCTGAATTCTCCGATCGAATCGAACCAATCGCAGAG 121
Query 60 GCTAAAGAAGAGG---TTTGAGTCA-AATCGGACGAGTCAGGATCAGAAAAAACGGTGAT 115
||| ||||||||| |||||| | |||| |||||||||||||||||||||||||||
Sbjct 122 GCT-AAGAAGAGGACCTTTGAG--AGAATC-TCCGAGTCAGGATCAGAAAAAACGGTGAT 177
Query 116 ACGGAAGCTAGTTCTAGGGCTAATGGGCGCCGCGGGCTCCAAACTCGAGAAAGCTCTCGG 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 ACGGAAGCTAGTTCTAGGGCTAATGGGCGCCGCGGGCTCCAAACTCGAGAAAGCTCTCGG 237
Query 176 CGACCAGTTCCCCGAAGGAGAACGCTACTTTGGATTCGAGAATTTCGGCAACACTTGCTA 235
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CGACCAGTTCCCCGAAGGTGAACGCTACTTTGGATTCGAGAATTTCGGCAACACTTGCTA 297
Query 236 CTGTAACAGCGTTTTGCAGGCTCTTTATTTCTGTGTTCCTTTCCGTGAACAATTGCTTGA 295
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 298 CTGTAACAGCGTTTTGCAGGCTCTTTATTTCTGTGTTCCTTTCCGTGAACAACTGCTCGA 357
Query 296 ATACTATACCAGTAATAAAAGCGTCGCCGATGCTGAAGAGAATCTTATGACCTGCCTGGC 355
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 358 ATACTATACCAGTAATAAAAGCGTGGCCGATGCTGAAGAGAATCTTATGACCTGCCTGGC 417
Query 356 AGACTTGTTTTCGCAGATAAGTTCCCAGAAGAAGAAAACTGGTGTTATTGCGCCTAAGCG 415
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 418 AGACTTGTTTTCGCAGATAAGTTCCCAGAAGAAGAAAACAGGTGTTATTGCGCCTAAGCG 477
Query 416 ATTTGTACAGAGGTTGAAGAAACAAAATGAGCTGTTTCGGAGCTATATGCACCAGGATGC 475
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 478 ATTTGTACAGAGGTTGAAGAAACAAAATGAGCTGTTTCGGAGTTATATGCACCAGGATGC 537
Query 476 ACATGAATTCCTGAATTATTTGCTGAATGAAGTTGTTGACATACTGGAGAAAGAGGCAAA 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ACATGAATTCCTGAATTATTTGCTGAATGAAGTTGTTGACATACTGGAGAAAGAGGCAAA 597
Query 536 AGCTACAAAAACTGAACATGAAACCTCGTCATCATCATCTCCCGAAAAGATTGCAAATGG 595
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 598 AGCTACAAAAACTGAACATGAAACCTCGTCATCATCATCTCCCGAGAAGATAGCAAATGG 657
Query 596 ACTGAAAGTTCCTCAGGCAAATGGTGTTGTGCACAAAGAGCCTATTGTTACTTGGGTGCA 655
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 658 ACTGAAAGTTCCTCAGGCAAATGGTGTTGTGCACAAGGAGCCTATTGTTACATGGGTGCA 717
Query 656 CAATATTTTTCAGGGCATACTTACCAACGAGACAAGGTGTCTGCGATGTGAAACAGTGAC 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CAATATTTTTCAGGGCATACTTACCAACGAGACAAGGTGTCTGCGATGTGAAACAGTGAC 777
Query 716 AGCAAGAGACGAAACATTCCTAGACCTAAGCCTTGATATTGAACAGAACAGTTCGATAAC 775
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 778 AGCAAGAGACGAAACATTCCTAGACCTAAGCCTTGATATCGAACAGAACAGTTCGATAAC 837
Query 776 TAGCTGTTTGAAAAACTTCAGCTCCACAGAGACGCTTCACGCTGAAGACAAATTCTTTTG 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TAGCTGTTTGAAAAACTTCAGCTCCACAGAGACGCTTCACGCTGAAGACAAATTCTTTTG 897
Query 836 TGACAAATGCTGCAGCTTACAAGAAGCACAGAAA-CGAATGAAGATCAAGAAGCCACCAC 894
|||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||
Sbjct 898 TGACAAATGCTGCAGCTTACAAGAAGCACA-AAAGCGGATGAAGATCAAGAAGCCACCAC 956
Query 895 ACATCTTAGTCATCCATCTAAAGCGATTCAAATACATCGAACAGCTAGGCCGCTACAAGA 954
||||| |||| || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 957 ACATCCTAGTGATTCATCTAAAACGATTCAAATACATCGAACAGCTAGGCCGCTACAAGA 1016
Query 955 AGCTCTCATATCGAGTTGTCTTCCCTTTGGAGCTAAAACTGAGCAACACAGTGGAACCAT 1014
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 AGCTCTCCTATAGAGTTGTCTTCCCTTTGGAGCTAAAACTGAGCAACACAGTGGAACCAT 1076
Query 1015 ACGCAGACGTGGAGTACTCTCTGTTTGCAGTGGTGGTTCATGTCGGAAGTGGACCTAACC 1074
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1077 ACGCAGACGTGGAGTACTCTCTGTTTGCAGTGGTGGTTCATGTGGGAAGTGGACCCAACC 1136
Query 1075 ATGGTCACTACGTCAGCCTTGTGAAAAGCCATAACCATTGGCTCTTCTTTGATGATGAGA 1134
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 ATGGTCATTACGTAAGCCTTGTGAAAAGCCATAACCATTGGCTCTTCTTTGATGATGAGA 1196
Query 1135 ATGTTGAGATGATTGAAGAATCAGCTGTTCAAACATTCTTTGGATCGTCTCAGGAGTATT 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 ATGTTGAGATGATTGAAGAATCAGCTGTTCAAACATTCTTTGGATCGTCTCAGGAGTATT 1256
Query 1195 CAAGCAATACTGATCATGGTTACATCCTGTTCTATGAGAGCCTTGGACCGACCAAGTAAA 1254
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1257 CGAGCAATACTGACCATGGTTACATCCTGTTCTATGAGAGCCTTGGACCGACCAAGTGAA 1316
Query 1255 AGCTGAGAAAGCAGAAAAAATGACTTTCTTCGtttttttt-tCTTTAACTATTATTAGTA 1313
||||||||||||||||| || ||||||||||||||||||| |||| ||||||||||||||
Sbjct 1317 AGCTGAGAAAGCAGAAAGAAGGACTTTCTTCGTTTTTTTTCTCTT-AACTATTATTAGTA 1375
Query 1314 ATGGTATATGTTTGTCTTTAAAAGT-AAACTCAATTGACAGTAACtttttttttttttt- 1371
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1376 ATGGTATATGTTTGTCTT-AAAAGTCAAACTCAATTGACAGTAACTTTTTTTTTTTTTTG 1434
Query 1372 -ttctc-t-ctgtctctctctctctctcCCAGAGATATTTGGTGAGTTTTAAA-TTGGAA 1427
|| | | || ||||| | ||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1435 GTTTTTGTTCTTTCTCTGTGTCTCTCTCCCAAAGATATTTGGTGAGTTTTAAAATTGGAA 1494
Query 1428 GTTTTAACTGGAATTTGTATACTTTGAAAAAGGCCATGTACAGTTTATGGCAAATAACTT 1487
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 GTTTTAACTGGAATTTGTATACTTTGAAAAAGGCCATGTACAGTTTATGGCAAATAACT- 1553
Query 1488 CCCTTGTCTTTGTATCCTTTAGCAA-GGAAGAAGATAACAATATGTT 1533
|| ||||||||||||| |||||||| |||||||| | ||||||||||
Sbjct 1554 CC-TTGTCTTTGTATC-TTTAGCAAAGGAAGAAGGTTACAATATGTT 1598
> AT2G22310.2 | Symbols: UBP4 | ubiquitin-specific protease 4 |
chr2:9476637-9478881 REVERSE LENGTH=1292
Length=1292
Score = 1038 bits (562), Expect = 0.0
Identities = 857/996 (86%), Gaps = 33/996 (3%)
Strand=Plus/Plus
Query 255 GCTCTTTATTTCTGTG-TTCCTTTCCGTGAACAATTGCTTGAATACTATACCAGTAATAA 313
||||||||||| |||| | ||||| |||||||||||||||||| | ||| | | |||| |
Sbjct 216 GCTCTTTATTTTTGTGCTCCCTTT-CGTGAACAATTGCTTGAACATTATGCAAATAAT-A 273
Query 314 AAGCGTCGCCGATGCTGAAGAGAATCT-TATGACCTGCCTGGCAGACTTGTTTTCGCAGA 372
|||| | |||||||| |||||||| | |||||||| |||| ||||| ||||||||||
Sbjct 274 AAGC-T----GATGCTGAGGAGAATCTCT-TGACCTGCTTGGCTGACTTATTTTCGCAGA 327
Query 373 TAAGTTCCCAGAAGAAGAAAACTGGTGTTATTGCGCCTAAGCGATTTGTACAGAGGTTGA 432
|||||||||||||||||||||| || ||||| || || ||||| ||||| || |||||||
Sbjct 328 TAAGTTCCCAGAAGAAGAAAACAGGAGTTATCGCTCCGAAGCGCTTTGTGCAAAGGTTGA 387
Query 433 AGAAACAAAATGAGCTGTTT-CGGAGCTATATGCACCAGGATGCACATGAATTCCTGAAT 491
||||||| |||||||| ||| ||||| |||||||| |||||||||||||| |||||||||
Sbjct 388 AGAAACAGAATGAGCT-TTTCCGGAGTTATATGCATCAGGATGCACATGAGTTCCTGAAT 446
Query 492 TATTTGCTGAATGAAGTTGTTGACATAC-TGGAGAAAGAGGCAAAAGCTACAAAAACTGA 550
|||||||| |||||| ||||||| || | | ||||||||| || |||| |||||| | |
Sbjct 447 TATTTGCTAAATGAACTTGTTGAGAT-CTTAGAGAAAGAGACACAAGCCACAAAAGCAG- 504
Query 551 AC-ATGAAACCTCGTCATCATCATCTCCCGAAAAGATTGCAAATGGACTGAAAGTTCCTC 609
|| |||||| | | ||||||||||| |||||||||||||||| |||||||| ||| |
Sbjct 505 ACAATGAAA---C-T--TCATCATCTCCTGAAAAGATTGCAAATGTACTGAAAGCTCCCC 558
Query 610 AGGCAAATGGTGTTGTGCACAAAGAGCCTATTGTTACTTGGGTGCACAATATTTTTCAGG 669
||||||||||| | | || |||||||| |||||||||||||||||||| ||||||||||
Sbjct 559 TGGCAAATGGTG-T-T-CATAAAGAGCCAATTGTTACTTGGGTGCACAAGATTTTTCAGG 615
Query 670 GCATACTTACCAACGAGACAAGGTGTCTGCGATGTGAAACAGTGACAGCAAGAGACGAAA 729
| |||||||||||||||||||||||||| || ||||| ||||| ||||||||||| ||||
Sbjct 616 GTATACTTACCAACGAGACAAGGTGTCTACGGTGTGAGACAGTAACAGCAAGAGATGAAA 675
Query 730 CATTCCTAGACCTAAGCCTTGATATTGAACAGAACAGTTCGATAACTAGCTGTTTGAAAA 789
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 CTTTCCTAGACCTGAGCCTTGATATTGAACAGAACAGTTCGATAACTAGCTGTTTGAAAA 735
Query 790 ACTTCAGCTCCACAGAGACGCTTCACGCTGAAGACAAATTCTTT-TGTGACAAATGCTGC 848
||||||||||||||||||| || || || |||||||| || ||| |||||||||||||||
Sbjct 736 ACTTCAGCTCCACAGAGACTCTACATGCAGAAGACAAGTT-TTTCTGTGACAAATGCTGC 794
Query 849 AGCTTACAAGAAGCACAGAA-ACGAATGAAGATCAAGAAGCCACCACACATCTTAGTCAT 907
|| ||||||||||| ||||| | |||||||||| ||||| || |||||||||||||| ||
Sbjct 795 AGTTTACAAGAAGCGCAGAAGA-GAATGAAGATTAAGAAACCGCCACACATCTTAGTTAT 853
Query 908 CCATCT-AAAGCGATTCAAATACATCGAACAGCTAGGCCGCTACAAGAAGCTCTCATATC 966
||||| ||| || ||||||||||| |||||| | ||||||||||||||||| || || |
Sbjct 854 ACATCTGAAA-CGGTTCAAATACATGGAACAGTTGGGCCGCTACAAGAAGCTATCGTA-C 911
Query 967 -GAGTTGTCTTCCCTTTGGAGCTAAAACTGAGCAACACAGTGGAACCATACGCAGACGTG 1025
|||| ||||||||| |||| || ||||| |||||||||||||| ||| | ||| |
Sbjct 912 AGAGTCGTCTTCCCTCTGGAACTGAAACTCAGCAACACAGTGGATGAATATGTGGACATT 971
Query 1026 GAGTACTCTCTGTTTGCAGTGGTGGTTCATGTCGGAAGTGGACCTAACCATGGTCACTAC 1085
||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 972 GAGTACTCTCTCTTTGCAGTCGTGGTTCATGTCGGAAGTGGACCTAACCACGGTCATTAT 1031
Query 1086 GTCAGCCTTGTGAAAAGCCATAACCATTGGCTCTTCTTTGATGATGAGAATGTTGAGATG 1145
|| ||||| |||||| ||||||||| |||||||||||||||||||||| ||| || ||
Sbjct 1032 GTTAGCCTCGTGAAATCCCATAACCACTGGCTCTTCTTTGATGATGAGAGTGTCGAAATA 1091
Query 1146 ATTGAAGAATCAGCTGTTCAAACATTCTTTGGATCGTCTCAGGAGTATTCAAGCAATACT 1205
||||||||||| ||||||||||||||||| || || || || ||||| ||||| ||||||
Sbjct 1092 ATTGAAGAATCTGCTGTTCAAACATTCTTCGGTTCATCGCAAGAGTACTCAAGTAATACT 1151
Query 1206 GATCATGGTTACATCCTGTTCTATGAGAGCCTTGGA 1241
|||||||| |||||| |||| || |||||||| |||
Sbjct 1152 GATCATGGCTACATCTTGTTATACGAGAGCCTCGGA 1187
Score = 180 bits (97), Expect = 4e-44
Identities = 117/127 (92%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 129 CTAGGGCTAATGGGCGCCGCGGGCTCCAAACTCGAGAAAGCTCTCGGCGACCAGTTCCCC 188
|||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 48 CTAGGGCTGATGGGCGCGGCGGGGTCCAAACTCGAGAAAGCTCTCGGCGACCAGTTCCCG 107
Query 189 GAAGGAGAACGCTACTTTGGATTCGAGAATTTCGGCAACACTTGCTACTGTAACAGCGTT 248
||||||||||| ||||| || ||||| ||||||||||||||||| ||||||||||| |||
Sbjct 108 GAAGGAGAACGATACTTCGGTTTCGAAAATTTCGGCAACACTTGTTACTGTAACAGTGTT 167
Query 249 TTGCAGG 255
|||||||
Sbjct 168 TTGCAGG 174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75652221315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5