BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490781
Length=2229
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39952.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1923 0.0
> AT4G39952.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr4:18527680-18530007 FORWARD LENGTH=2328
Length=2328
Score = 1923 bits (1041), Expect = 0.0
Identities = 1166/1226 (95%), Gaps = 9/1226 (1%)
Strand=Plus/Plus
Query 19 CGTCGTCTCTTGAAACCCAAATC-TGTTGTTACTCTACGAACAATCGCATCTTCTTCTTC 77
|||||||||||||||||| |||| ||||||||||||||| ||| | | |||||||||||
Sbjct 7 CGTCGTCTCTTGAAACCC-AATCTTGTTGTTACTCTACG--CAAACTC-TCTTCTTCTTC 62
Query 78 CTCAAGCTACGTCGATCGTCATATTAGTGTGATTCTCTGCGATCAGAGCTTGAGCTTAGA 137
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 CGCAAGCTACGTCGATCGTCATATTAGTGTGATTCTCTGCGATCAGAGCTTGAGCTTAGA 122
Query 138 GTCTCTGCGTAAACACAACGCTCTTATCATCACCGGAGGAAACTCGGAAAATATCTTCGT 197
||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 123 GTCTCTGCGCAAACACAACGCTCTTATCATCACCGGAGGACTCTCGGAAAACATCTTCGT 182
Query 198 CGCATCGAAGCTAATTTCATCTTACGCTTCTTACGGGAAACCAAATTTGTCTTCCAGAGT 257
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 183 CGCATCGAAGCTAATTTCATCTTACGCTTCTTACGGGAAACCCAATTTGTCTTCCAGAGT 242
Query 258 CTTCGATTTGGTTACTCGAAGAGATGTCTTTCTTTGGAATTCTATTATCAAAGCACATTT 317
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 243 CTTCCATTTGGTTACTCGAAGAGATATCTTTCTTTGGAATTCTATTATCAAAGCACATTT 302
Query 318 CTCCAATGGCGATTATGCTCGATCCTTGTGTTTCTTCTTCTCAATGCTCTTGTCTGGCCA 377
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 CTCCAATGGGGATTATGCTCGATCCTTGTGTTTCTTCTTCTCAATGCTCTTGTCTGGCCA 362
Query 378 ATCCCCTGATCATTTCACTGCTCCAATGGTTGTTTCTGCTTGTGCGGAGCTTTTGTGGTT 437
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 363 ATCCCCTGATCATTTCACTGCTCCCATGGTTGTTTCTGCTTGTGCGGAGCTTTTGTGGTT 422
Query 438 TGATGTTGGGAGTTTCGTTCATGGGTTTGTGTTGAAACATGGAGGTTTTGA-ACGAAACA 496
| ||||||||| ||||||||| ||| |||| |||||||||||||||||||| | ||||||
Sbjct 423 TCATGTTGGGACTTTCGTTCACGGGCTTGTTTTGAAACATGGAGGTTTTGATA-GAAACA 481
Query 497 CTGCAGTGGGAGCTTCCTTTGTTTATTTCTACTCAAAGTGTGGGTTTTTACAAGATGCGT 556
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 482 CTGCTGTGGGAGCTTCCTTTGTGTATTTCTACTCAAAGTGTGGGTTTTTACAAGATGCGT 541
Query 557 GTCTTGTGTTCGACGAAATGCCTGAGAGAGATGTTGTTGCTTGGACTGCCATTATATCTG 616
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 542 GTCTTGTGTTCGACGAAATGCCTGACAGAGATGTTGTTGCTTGGACTGCCATTATATCTG 601
Query 617 GGCATGTGCAGAACCGAGAGAGCAAGACAGGTTTGGGTTATCTTTGCAAGATGCATACTG 676
|||||||||||||| | |||||| || ||||||||||||||||||||||||||||| ||
Sbjct 602 GGCATGTGCAGAACGGCGAGAGCGAGGGAGGTTTGGGTTATCTTTGCAAGATGCATAGTG 661
Query 677 TTGGTTCTGATGTTGATAAGCCGAATCCCAGAACATTGGAATGCGGATTCCAAGCTTGTT 736
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 CTGGTTCTGATGTTGATAAGCCGAATCCCAGAACATTGGAATGCGGATTCCAAGCTTGTT 721
Query 737 CAAATTTGGGAGCTTTGAAAGAAGGAAGATGTCTTCATGGATTTGCGGTGAAAAATGGTT 796
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 CTAATCTGGGAGCTTTGAAAGAAGGAAGATGTCTTCATGGATTTGCGGTGAAAAATGGTT 781
Query 797 TAGCTTCTTCCAACGTT-GTCCAGTCTTCGATCTTTTCATTGTATTCGAAATCTGGGAAT 855
||||||||||||| ||| ||||||||||| || |||||||| ||||||||||||||||||
Sbjct 782 TAGCTTCTTCCAA-GTTTGTCCAGTCTTCCATGTTTTCATTCTATTCGAAATCTGGGAAT 840
Query 856 CCAGCTGAGGCTTATCTTTCTTTCCGTGAACTTGGGGATCAAGATATGTTTTCATGGACT 915
||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 841 CCATCCGAGGCTTATCTTTCTTTCCGTGAACTTGGGGATGAAGATATGTTTTCATGGACT 900
Query 916 TCGATTATAGCGTCACTGGTGAGATCAGGTAACGTGGAGGAAAGTTTTGATATGTTCTGG 975
||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||
Sbjct 901 TCGATTATAGCGTCACTGGCGAGATCAGGTGACATGGAGGAAAGTTTTGATATGTTCTGG 960
Query 976 GAAATGCAGAACAAGGGAATGCAGCCAGATGGAATTGTCATTAGTTGTTTGATTAGTGAA 1035
||||||||||||||||||||||| |||||||| |||||||||| |||||||||| ||||
Sbjct 961 GAAATGCAGAACAAGGGAATGCACCCAGATGGGGTTGTCATTAGCTGTTTGATTAATGAA 1020
Query 1036 CTAGGTAAGAAGATGCTTGTCCCTGAAGGTAAAGCCTTTCACGGGTTCGTCATAAGACAT 1095
|||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1021 CTAGGTAAGATGATGCTTGTCCCTCAGGGTAAAGCCTTTCACGGGTTCGTCATAAGACAT 1080
Query 1096 TGTTTCTCCTTAGACAGTACAGTTTGCAATTCGTTGTTATCGATGTACTGCAAATTCGAG 1155
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1081 TGTTTCTCTTTAGACAGTACAGTTTGCAATTCCTTGTTATCGATGTACTGCAAATTCGAG 1140
Query 1156 TTTCTGTCTGTGGCTGAGATGCTTTTCTGTAGGATAAGCGAAGAAGGAAACACAGAAGCT 1215
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1141 CTTCTGTCTGTGGCTGAGAAGCTTTTCTGTAGGATAAGCGAAGAAGGAAACAAAGAAGCT 1200
Query 1216 TGGAATACAATGCTTAAAGGCTATGG 1241
||||||||||||||||||||||||||
Sbjct 1201 TGGAATACAATGCTTAAAGGCTATGG 1226
Score = 1591 bits (861), Expect = 0.0
Identities = 947/990 (96%), Gaps = 0/990 (0%)
Strand=Plus/Plus
Query 1240 GGAGCGGTGCTACTGGGGAAGTCGTTGCATTGCTATGTTGTCAAAACTAGCTTGGATCTT 1299
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1339 GGAGCGGTGCTACTAGGGAAGTCGTTGCATTGCTATGTTGTCAAAACTAGCCTGGATCTT 1398
Query 1300 ACCATCTCAGTGGTCAATTCCCTCATTGATTTGTATGGAAAGATGGGAGACTTGACTGTT 1359
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1399 ACCATCTCAGTGGTCAATTCCCTCATTGATTTGTATGGAAAAATGGGAGACTTGACTGTA 1458
Query 1360 GCTTGGAGGATGTTCTGTGAAGCAGATACGAACATTGTCACGTGGAACGCAATGATTGCG 1419
|||||||||||||| |||||||||||||| ||| || |||| ||||||||||||||||||
Sbjct 1459 GCTTGGAGGATGTTTTGTGAAGCAGATACTAACGTTATCACTTGGAACGCAATGATTGCG 1518
Query 1420 TCTTATGTTTATTGTGAGCAACCCGACAAAGCCATTGCGTTGTTCGATAGAATGGTTTCT 1479
||||||||| | ||||||||| |||| ||||||||||| |||||||||||||||||||||
Sbjct 1519 TCTTATGTTCACTGTGAGCAATCCGAAAAAGCCATTGCATTGTTCGATAGAATGGTTTCT 1578
Query 1480 CAGAATTTCAAACCCAGCTCAATAACGTTGGTGACTCTGCTTATGGCTTGCGCCAATACT 1539
||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||
Sbjct 1579 GAGAATTTCAAACCCAGCTCAATAACTTTGGTGACTCTGCTTATGGCTTGTGTCAATACT 1638
Query 1540 GGCTCTCTGGAGAGAGGACAGATGATTCATCGGTACATCATTGAAACAGAGCACGAGATG 1599
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1639 GGCTCTCTGGAGAGAGGACAGATGATTCATCGGTACATCACTGAAACAGAGCACGAGATG 1698
Query 1600 AATCTTTCTCTTTCAACTGCTCTGATTGACATGTACGCAAAATGTGGCCACCTTGAAAAG 1659
||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1699 AATCTTTCTCTTTCAGCTGCTCTCATTGACATGTACGCGAAATGTGGCCACCTTGAAAAG 1758
Query 1660 TCACGAGAACTGTTTGATGCTGCAAGTCAGAAGGATGCCGTTTGTTGGAATGTGATGATC 1719
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1759 TCACGAGAACTGTTTGATGCTGGAAATCAGAAGGATGCCGTTTGTTGGAATGTGATGATA 1818
Query 1720 TCAGGTTATGGAATGCACGGACATGTTGAATCGGCCATTGCACTTTTTGATCAAATGGAA 1779
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1819 TCAGGTTATGGAATGCACGGAGATGTTGAATCGGCCATAGCACTTTTTGATCAAATGGAA 1878
Query 1780 GAGTCTGATGTTAAACCAACCGGACCTACATTTCTTGCCCTTCTATCAGCCTGCACGCAC 1839
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 1879 GAGTCTGATGTTAAACCAACCGGACCTACATTTCTTGCGCTTCTATCGGCTTGCACGCAC 1938
Query 1840 GCTGGTTTAGTTGAACACGGGAAAAACCTTTTTCTCAAGATGCATCAGTACGATGTGAAA 1899
||||||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 1939 GCTGGTTTAGTAGAACAAGGGAAAAAACTATTTCTCAAGATGCATCAGTACGATGTGAAA 1998
Query 1900 CCCAACTTAAAGCATTACTCTTGTCTTGTGGATCTTCTTTCCCGGTCTGGTAATTTGCAG 1959
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1999 CCCAACTTAAAGCATTACTCTTGTCTTGTGGATCTTCTTTCCAGGTCTGGTAATTTGGAG 2058
Query 1960 GAAGCTGAAACCACAGTCATGTCGATGCCATTCTCACCAGACGGGGTCATATGGGGAACA 2019
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2059 GAAGCTGAAAGCACAGTCATGTCTATGCCATTCTCACCAGACGGGGTCATATGGGGAACA 2118
Query 2020 TTGTTGAGCTCATGCATGACCCATGGGGAGTTTGAGATGGGAATTCGAATGGCAGACCGT 2079
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2119 TTGTTGAGCTCATGCATGACCCATGGGGAGTTTGAGATGGGAATTCGAATGGCAGAACGT 2178
Query 2080 GCGGTTGCTAGTGATCCGCAGAACGATGGGTATTATATAATGCTTGCGAACATGTACAGT 2139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2179 GCGGTTGCTAGTGATCCGCAGAACGATGGGTATTATATAATGCTTGCGAACATGTACAGT 2238
Query 2140 GCTGCAGGCAAGTGGGAACAAGCGGAAAGGGCACGAGAGATGATGAGGGAAAGCGGAGTT 2199
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2239 GCTGCAGGTAAGTGGGAAGAAGCGGAAAGGGCACGAGAGATGATGAGGGAAAGCGGAGTT 2298
Query 2200 GGGAAGAGAGCTGGACATAGTGTAGTCTAA 2229
|| ||||||||||| |||||||||||||||
Sbjct 2299 GGTAAGAGAGCTGGTCATAGTGTAGTCTAA 2328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110591800635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5