BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490783
Length=1668
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39960.1 | Symbols: | Molecular chaperone Hsp40/DnaJ family... 2771 0.0
AT2G22360.1 | Symbols: | DNAJ heat shock family protein | chr2... 1066 0.0
AT4G39970.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 63.9 5e-09
> AT4G39960.1 | Symbols: | Molecular chaperone Hsp40/DnaJ family
protein | chr4:18533755-18536618 FORWARD LENGTH=1716
Length=1716
Score = 2771 bits (1500), Expect = 0.0
Identities = 1615/1671 (97%), Gaps = 5/1671 (0%)
Strand=Plus/Plus
Query 1 TCATTTGAGTCTACTCGTTTTTTCTTATCTATCGCAAAACTCTCCCGTCGTCACCATTCG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCATTTGAGTCTACTCGTTTTTTCTTATCTATCGCAAAACTCTCCCGTCGTCACCATTCG 60
Query 61 ATTACGGGAGTGTAATGGCTCTTATACAATTCGGAAGTTCATGTGTTGCTCAATGGGGGA 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 ATTACGGGAGTGTAATGGCTCTTATACAATTTGGAAGTTCATGTGTTGCTCAATGGGGGA 120
Query 121 TTCTTCGTCCTCACTTTGCTGTTAAAGCTTTTTATCCAAGCAGATTGGAGTCTCACCAAG 180
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCTTCGTCCTCGGTTTGCTGTTAAAGCTTTTTATCCAAGCAGATTGGAGTCTCACCAAG 180
Query 181 ACAATTGCATCAGCCAGATAAATTGTTTGGGAGCTTCAAGGTCGAGTATGTTTGCACAGG 240
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 ACAATTGCATCAGCCAAATAAATTGTCTGGGAGCTTCAAGGTCGAGTATGTTTGCACAGG 240
Query 241 GCTCTTTACCCTTCTTGTCATTGACGGGAGTATCTCGTAATACACATTCTCGTAGAGGAG 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 GCTCTTTACCCTTCTTGTCATTGACGGGAGTATCTCCTAATACACATTCTCGTAGAGGAG 300
Query 301 CTCGCTTCACTGTTAGAGCCGATGCTGATTTCTATTCTGTCCTTGGAGTCTCTAAAAATG 360
||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||
Sbjct 301 CTCGCTTCACTGTTAGAGCTGATACTGATTTCTATTCTGTCCTTGGAGTCTCGAAAAATG 360
Query 361 CAACCAAAGCTGAGATTAAAAGTGCTTATCGGAAGCTCGCTAGGAGTTACCATCCGGACG 420
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||| || |
Sbjct 361 CAACCAAAGCTGAGATTAAAAGCGCTTATCGGAAGCTCGCTAGGAGTTATCATCCAGATG 420
Query 421 TGAACAAGGATGCTGGGGCAGAAGATAAATTTAAAGAAATAAGTAATGCATATGAGATCT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGAACAAGGATGCTGGGGCAGAAGATAAATTTAAAGAAATAAGTAATGCATATGAGATCT 480
Query 481 TATCAGATGATGAGAAAAGATCTCTGTACGACAGATATGGCGAGGCAGGAGTTAAAGGCG 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 481 TATCAGATGATGAGAAAAGATCTCTATACGACAGATATGGCGAGGCAGGAGTTAAAGGCG 540
Query 541 CTGGAATGGGAGGCATGGGGGATTATAGTAATCCATTTGATCTATTTGAGTCATTATTCG 600
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 541 CTGGAATGGGAGGCATGGGGGATTATAGTAATCCGTTTGATCTATTTGAGTCATTATTCG 600
Query 601 AAGGAATGGGTGGGATGGGAGGAATGGGAGGTGGAATGGGTAGTAGAGGTTCAAGGAGCA 660
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 601 AAGGAATGGGTGGGATGGGAGGAATGGGCGGTGGAATGGGTAGTAGAGGTTCAAGGAGCA 660
Query 661 GAGCTATCGATGGTGAAGATGAGTATTACTCACTAATCTTGAATTTCAAAGAAGCGGTTT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GAGCTATCGATGGTGAAGATGAGTATTACTCACTAATCTTGAATTTCAAAGAAGCGGTTT 720
Query 721 TCGGTATTGAGAAAGAAATTGAGATATCTCGGTTAGAGAGCTGTGGGACTTGCAATGGTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCGGTATTGAGAAAGAAATTGAGATATCTCGGTTAGAGAGCTGTGGGACTTGCAATGGTT 780
Query 781 CTGGAGC-AAAGGCGGGAACCAAACCAACCAAATGCAAAACGTGTGGCGGGCAAGGACAG 839
||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 781 CTGGAGCTAAAG-CGGGAACCAAACCAACCAAATGCAAAACATGTGGCGGGCAAGGACAG 839
Query 840 GTGGTGGCATCGACGAGGACACCACTCGGTGTATTCCAACAAGTCATGACTTGCTCTCCA 899
||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 840 GTGGTAGCATCAACGAGGACACCACTCGGTGTATTCCAACAAGTGATGACTTGCTCTCCG 899
Query 900 TGCAACGGAACTGGAGAGATATCAAAACCATGTGGTGCATGTTCAGGAGATGGACGTGTG 959
|| ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 900 TGTAACGGAACTGGGGAGATATCAAAACCGTGTGGTGCATGCTCAGGAGATGGACGTGTG 959
Query 960 AGAAGGACAAAGCGGATTAGTCTTAAAGTTCCTGCGGGTGTGGATTCTGGAAGTAGGTTA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AGAAGGACAAAGCGGATTAGTCTTAAAGTTCCTGCGGGTGTGGATTCTGGAAGTAGGTTA 1019
Query 1020 AGAGTAAGGGGAGAAGGAAATGCAGGAAAGAGAGGTGGATCACCGGGAGATCTCTTTGCG 1079
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AGAGTGAGGGGAGAAGGGAATGCAGGAAAGAGAGGTGGATCACCGGGAGATCTCTTTGCG 1079
Query 1080 GTTATTGAGGTTATTCCGGATCCGATTTTGAAGCGTGATGATACAAATATACTTTATACG 1139
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1080 GTTATTGAGGTTATTCCAGATCCGGTTTTGAAGCGTGATGATACAAATATACTTTATACG 1139
Query 1140 TGTAAGATATCGTATGTAGATGCCATATTAGGGACGACTCTGAAGGTTCCAACAGTGGAT 1199
||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||
Sbjct 1140 TGTAAGATATCGTATGTAGATGCCATATTGGGGACGACTTTGAAGGTACCAACAGTGGAT 1199
Query 1200 GGAGAGGTGGATTTGAAAGTACCAGCAGGGACACAACCGAGCACGACATTGGTAATGGCG 1259
||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||
Sbjct 1200 GGAGAGGTGGATTTGAAAGTACCGGCAGGGACACAACCAAGCACGACATTGGTGATGGCT 1259
Query 1260 AGAAAAGGAGTTCCGGTTTTGAATAAGAGTAAGATGAGAGGTGACCAATTAGTGAGAGTG 1319
| ||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 1260 AAAAAAGGAGTTCCGGTTTTGAATAAGAGCAAGATGAGAGGTGATCAGTTAGTGAGAGTG 1319
Query 1320 CAAGTTGAGATTCCTAAGAGATTGAGTAAAGAAGAGAAGAAGCTTGTTGAGGAGCTTGCT 1379
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1320 CAAGTTGAGATTCCTAAGAGATTGAGTAAAGAAGAGAAGATGCTTGTTGAGGAGCTGGCT 1379
Query 1380 GATATGAGCAAGAACAAGGTAGCTAATAGCAGGAGATAAACCAACACACAATATTAGTGA 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GATATGAGCAAGAACAAGGTAGCTAATAGCAGGAGATAAACCAACACACAATATTAGTGA 1439
Query 1440 AATTTGGTGTTATATAGATTCATCATTCTCTGCTTGTCTTCTTTCTAATGGGTCTTCTAA 1499
||| || ||||||||||||||||||||||||||||||| |||||||||||| || |||||
Sbjct 1440 AATGTGATGTTATATAGATTCATCATTCTCTGCTTGTCGTCTTTCTAATGGTTCGTCTAA 1499
Query 1500 TGATGGAGAAGATAAGCAAGAGG-AAGAAGAAAGACTTATTAGGTGAGAGGAAAATTTGA 1558
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1500 CGATGGAGAAGATAAGCAAGAGGCAA-AAGAAAGACTTATTAGGTGAGAGGAAAATTTGA 1558
Query 1559 AGAACTCTatttttgggttttcctcttcaatttttgtgttttacttttaaaacaattttt 1618
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1559 AGAACTCTGGTTTTGGGTTTTCCTCTTCAATTTTTGTGTTTTACTTTTAAAACAAATTTT 1618
Query 1619 atggatttaTC-GGATTCAGGGTAGGTCTTGATTGTATTGTACTGCTATTT 1668
||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1619 ATGGATTTATCAGGATTCAGGGTAGGTCTTGATTGTATTGTACTGCTATTT 1669
> AT2G22360.1 | Symbols: | DNAJ heat shock family protein | chr2:9497595-9500615
FORWARD LENGTH=1615
Length=1615
Score = 1066 bits (577), Expect = 0.0
Identities = 1159/1429 (81%), Gaps = 83/1429 (6%)
Strand=Plus/Plus
Query 20 TTTTCTTATCTATCGCAAAACTCTCCCGTCGT-CACCATTCGATTACGGGAGTGTAATG- 77
||||||||||| || | | |||| ||||||| ||||||| ||||||||||||||| ||
Sbjct 65 TTTTCTTATCTCTCTCGGAGCTCTTCCGTCGTCCACCATT-GATTACGGGAGTGTATTGA 123
Query 78 GC------T--CT-T-ATACAA-TTCGGAAGTTCATGTGTTGCTCAATGGGGGATTCTTC 126
|| | || | |||||| || |||||| ||||||||||||||| ||| | |||
Sbjct 124 GCTAAATATGGCTATAATACAACTT-GGAAGTACATGTGTTGCTCAAT---GGAGTATTC 179
Query 127 GTCCTCACTTTGCTGTTAAAGCTTTTTATCCAAGCAGATTGGAGT---CTCACCAAGACA 183
||||||| ||||| || | ||||| |||||| |||||| | || | ||| ||| | |
Sbjct 180 GTCCTCAATTTGCAGTCAGAGCTTATTATCCCAGCAGAATCGAATCAACTCGCCATCAAA 239
Query 184 ATTGCA-TCAGCC-AGATAAATTGTTTGGGAGCTTCAAGGTCGAGTATGTT-TGCACA-G 239
||| || | |||| || ||||||||||||||||||||| |||||||||||| | |||| |
Sbjct 240 ATTCCAGT-AGCCAAG-TAAATTGTTTGGGAGCTTCAAAGTCGAGTATGTTCT-CACATG 296
Query 240 GGCTCTTTACCCTTCTTGT-CATTGACGGGAGTATCTC-GTAATA--CA-CATTCTCGTA 294
|| || || |||||||||| || |||||||| | || | | |||| || | | |||| |
Sbjct 297 GG-TCATTGCCCTTCTTGTCCA-TGACGGGAATGTC-CAGAAATATGCATCCTCCTCGCA 353
Query 295 GAGGAGCTCGCTTCACTGTTAGAGCCGATGCTGATTTCTATTCTGTCCTTGGAGTCTCTA 354
||||| ||||||||||||||||||| ||||| |||| |||||| || || ||||| || |
Sbjct 354 GAGGATCTCGCTTCACTGTTAGAGCTGATGCAGATTACTATTCGGTACTCGGAGTTTCGA 413
Query 355 AAAATGCAACCAAAGCTGAGATTAAAAGTGCTTATCGGAAGCTCGCTAGGAGTTACCATC 414
|||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||
Sbjct 414 AAAATGCAACCAAAGCTGAGATTAAAAGCGCTTATCGGAAGCTGGCTAGGAATTACCATC 473
Query 415 CGGACGTGAACAAGGATGCTGGGGCAGAAGATAAATTTAAAGAAATAAGTAATGCATATG 474
|||| |||||||||||| |||| |||||||| ||||| |||||||||||||| |||||||
Sbjct 474 CGGATGTGAACAAGGATCCTGGCGCAGAAGAGAAATTCAAAGAAATAAGTAACGCATATG 533
Query 475 AGATCTTATCAGATGATGAGAA-AAGATCTCTGTACGACAGATATGGCGAGGCAGGAGTT 533
|| | |||||||||||||| || || |||||| ||||| || ||||| ||||| ||| ||
Sbjct 534 AGGTTTTATCAGATGATGAAAAGAA-ATCTCTTTACGATAGGTATGGTGAGGCCGGACTT 592
Query 534 AAAGGCGCTG--GAATGGGAGGCA-TGGGGGATTATAGTAATCCATTTGATCTATTTGAG 590
|||||||||| | || | | || ||||| ||| ||||||||| || |||||||| ||
Sbjct 593 AAAGGCGCTGCTGGATTTG-G-CAATGGGG-ATTTTAGTAATCCGTTCGATCTATTCGAC 649
Query 591 TCATTATTCGAAGGAATGGGTGGGATGGGAGGAATGGGAGGTGGAATGGGTAGTAGAGGT 650
|||||||||||||| | | || ||| ||||| ||| | ||| || | |
Sbjct 650 TCATTATTCGAAGGC-T---TCGG-TGG------TGGGA--TGG---G--TAG-AG-G-T 688
Query 651 TCAAGGAGCAGAGCTATCGATGGTGAAGATGAGTATTACTCACTAATCTTGAATTTCAAA 710
||||| ||||||||| | |||||| |||| ||||||||| | |||||||| || ||||||
Sbjct 689 TCAAGAAGCAGAGCTGTGGATGGTCAAGACGAGTATTACACGCTAATCTTAAACTTCAAA 748
Query 711 GAAGCGGTTTTCGGTATTGAGAAAGAAATTGAGATATCTCGGTTAGAGAGCTGTGGGAC- 769
|||||||||||||| || ||||||||||| |||||||| ||| | ||||||||||||||
Sbjct 749 GAAGCGGTTTTCGGAATGGAGAAAGAAATAGAGATATCCCGGCTCGAGAGCTGTGGGACA 808
Query 770 T-TGCAATGGTTCTGGAGCAAAGGCGGGAACCAAACCAACCAAATGCAAAACGTGTGGCG 828
| || || ||||| || ||||| | ||||||||||| |||||||||| ||||||||||
Sbjct 809 TGTG-AA-GGTTCAGGTGCAAAACCTGGAACCAAACCGACCAAATGCACCACGTGTGGCG 866
Query 829 GGCAAGGACAGGTGGTGGCATC-GACGAGGACACCACTCGGTGTATTCCAACAAGTCATG 887
| ||||| || ||||| || | | | || || || || || || |||||||||||||||
Sbjct 867 GACAAGGCCAAGTGGTTTCAGCAG-CTAGAACTCCTCTGGGCGTGTTCCAACAAGTCATG 925
Query 888 ACTTGCTC-TCCATGCAACGGAACTGGAGAGATATCAAAACCATGTGGTGCATGTTCAGG 946
|||||||| ||| || || || ||||||||||| || | || |||||| | || || ||
Sbjct 926 ACTTGCTCGTCC-TGTAATGGCACTGGAGAGATCTCGACGCCGTGTGGTACTTGCTCTGG 984
Query 947 AGATGGACGTGTGAG-AAGGACAAAGCGGATTAGTCTTAAAGTTCCTGC-GGGTGTGGAT 1004
||| ||||| ||||| ||| ||||| ||||| ||||| ||||| || || ||| || |||
Sbjct 985 AGACGGACGCGTGAGGAAG-ACAAAACGGATAAGTCTCAAAGTACCAGCCGGG-GTTGAT 1042
Query 1005 TCTGGAAGTAGGTTAAGAGTAAGGGGAGAAGGAAATGCAGGAAAGAGAGGTGGATCACCG 1064
|| || || |||| ||||| || |||||||| ||||| || |||||||| ||||||||
Sbjct 1043 TCAGGTAGCCGGTTGAGAGTGAGAGGAGAAGGCAATGCCGGGAAGAGAGGCGGATCACCA 1102
Query 1065 GGAGATCTCTTTGCGGTTATTGAGGTTATTCCGGATCCGATTTTGAAGCGTGATGATACA 1124
|| ||||| |||| ||||| || ||||| || || ||||||||||| || || ||||||
Sbjct 1103 GGCGATCTGTTTGTTGTTATAGAAGTTATCCCAGACCCGATTTTGAAACGAGACGATACA 1162
Query 1125 AATATACTTTATACGTGTAAGATATCGTATGTAGATGCCATATTAGGGACGACTCTGAAG 1184
||||| || || || || |||||||||||| | ||||| || ||||||||||| |||||
Sbjct 1163 AATATTCTCTACACTTGCAAGATATCGTATATCGATGCGATTTTAGGGACGACACTGAAA 1222
Query 1185 GTTCCAACAGTGGATGG-AGAGGTGGATTTGAAAGTACCAGCAGGGACACAACCGAGCAC 1243
|| |||||||||||||| | || | ||||||||||| ||||| ||||||||||| |||||
Sbjct 1223 GTACCAACAGTGGATGGGACAG-TAGATTTGAAAGTTCCAGCTGGGACACAACCTAGCAC 1281
Query 1244 GACA-TTGGTAATGGCGAGAAAAGGAGTTCCGGTTTTGAATAAGAGTAAGATGAGAGGTG 1302
||| ||| | ||||||| ||||||||||||||| ||||| |||||||| |||||||| |
Sbjct 1282 GACGCTTG-TGATGGCGAAAAAAGGAGTTCCGGTATTGAACAAGAGTAATATGAGAGGAG 1340
Query 1303 ACCAATTAGTGAGAGTGCAAGTTGAGATTCCTAAGAGATTGAGTAAAGAAGAGAAGAAGC 1362
| || || |||||||| ||||| ||||| |||||||||||||| ||||| ||||| || |
Sbjct 1341 ATCAGTTGGTGAGAGTACAAGTGGAGATACCTAAGAGATTGAGCAAAGAGGAGAAAAAAC 1400
Query 1363 TTGTTGAGGAGCTTGCTGATATGAGCAAGAACAAGG-TAGCTAATAGCA 1410
|| |||| ||||||||||||||||||||||||||| | ||||||||||
Sbjct 1401 TTATTGAAGAGCTTGCTGATATGAGCAAGAACAAGACT-GCTAATAGCA 1448
> AT4G39970.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr4:18536538-18538506 REVERSE
LENGTH=1168
Length=1168
Score = 63.9 bits (34), Expect = 5e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Minus
Query 1635 CAGGGTAGGTCTTGATTGTATTGTACTGCTATTT 1668
||||||||||||||||||||||||||||||||||
Sbjct 1168 CAGGGTAGGTCTTGATTGTATTGTACTGCTATTT 1135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82429294890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5