BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490786
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39990.1 | Symbols: ATRABA4B, ATRAB11G, ATGB3, RABA4B | RAB ... 1426 0.0
AT4G40000.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 117 2e-25
> AT4G39990.1 | Symbols: ATRABA4B, ATRAB11G, ATGB3, RABA4B | RAB
GTPase homolog A4B | chr4:18542551-18543978 FORWARD LENGTH=1045
Length=1045
Score = 1426 bits (772), Expect = 0.0
Identities = 859/899 (96%), Gaps = 14/899 (2%)
Strand=Plus/Plus
Query 98 AGAGAAGTGTTTCAATAGTTCGCCGTCAAGATGGCCGGAGGAGGCGGATACGGCGGCGCA 157
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct 142 AGAGAAGTGTTTCAATAGTTTGGCGTGAAGATGGCCGGAGGAGGCGGATACGGCGGCGCA 201
Query 158 TCGGGGAAAGTTGATTACGTCTTCAAAGTTGTTCTGATCGGAGATTCGGCTGTTGGGAAA 217
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 202 TCGGGGAAAGTTGATTACGTCTTCAAAGTTGTTCTAATCGGAGATTCGGCTGTTGGGAAA 261
Query 218 TCACAACTACTTGCTCGATTCGCTAGAGACGAATTCAGTATGGATTCTAAAGCCACCATC 277
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 262 TCGCAACTACTTGCTCGATTCGCTAGAGACGAATTCAGCATGGATTCTAAAGCCACCATC 321
Query 278 GGCGTCGAGTTCCAAACTCGTACGCTCTCCATTGAACAAAAAAGCATTAAGGCTCAGATC 337
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 322 GGCGTCGAGTTCCAAACTCGTACCCTCTCCATTGAACAAAAAAGCATTAAGGCTCAGATC 381
Query 338 TGGGATACCGCTGGTCAGGAAAGATACAGAGCAGTTACAAGCGCATACTACAGAGGAGCA 397
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 382 TGGGATACCGCTGGTCAGGAAAGATACAGAGCCGTTACAAGCGCATACTACAGAGGAGCA 441
Query 398 GTTGGTGCAATGCTGGTTTATGATATGACTAAACGCGAAACCTTTGAGCATATCCCTCGT 457
||||| ||||||||||||||||||||||| ||||| || |||||||||||||| || |||
Sbjct 442 GTTGGCGCAATGCTGGTTTATGATATGACGAAACGTGAGACCTTTGAGCATATTCCGCGT 501
Query 458 TGGCTTGAAGAACTGAGGGCGCACGCCGATAAGAACATTGTCATCATCCTTATTGGAAAC 517
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 502 TGGCTTGAAGAACTGAGGGCGCACGCTGATAAGAACATTGTCATCATCCTTATTGGAAAC 561
Query 518 AAGTCTGATCTAGAAGATCAAAGAGCTGTTCCCACTGAAGACGCTAAAGAGTTTGCTGAG 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 AAGTCTGATCTAGAAGATCAAAGAGCTGTTCCCACTGAAGACGCTAAAGAGTTTGCTGAG 621
Query 578 AAGGAAGGACTCTTTTTCCTCGAGACCTCAGCTTTAAACGCAACCAATGTCGAAAACTCC 637
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 622 AAGGAAGGACTCTTTTTCCTCGAGACCTCTGCTTTAAACGCAACCAATGTCGAAAACTCC 681
Query 638 TTCAACACTCTAATGACAGAGATATACAATACCGTGAACAAGAAGAATCTTGCATCTGTC 697
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 682 TTCAACACTCTAATGACTCAGATATACAATACCGTGAACAAGAAGAATCTTGCATCTG-- 739
Query 698 GAGAATCAAGGCGACTCAAATAACCCCGGTTCCTTGGCTGGTAAGAAGATTGTCATCCCA 757
| | ||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 740 -A-A-----GGCGACTCAAATAACCCCGGTTCATTGGCTGGTAAGAAGATTCTCATCCCA 792
Query 758 GGTTCTGGACAGGAGATTCCCGCTAAGACCAGCACATGTTGTAGTTCTTCTTGATCTGTC 817
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 793 GGTTCTGGACAGGAGATTCCCGCTAAGACCAGCACTTGTTGTACTTCTTCTTGATCTGTC 852
Query 818 TCGTTAC--AAGCAAGATTCAttttttttCCTCCTGAAATTTGGTGATAGAGAATGCTAC 875
|| | || |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 853 TCCT-ACTCAAGCAAGATTCATTTTTTTTCCTCCTGAAATTTG-TGATAGAGAATGCTAC 910
Query 876 TTTCATTGTATATTCTTTTTCGAATCTGGCTTGTTTGCTGGTTCATTCAACATTGGTGTG 935
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 911 TTTCATTGTATATTCTTTTTCGAATCTGGCTTGTTTGCTAGTTCATTAAACATTGGTGTG 970
Query 936 CAATTGGACACCGATAGAAAGTATTGGAACAA-TAGCTTTTGATTGAAATATGAAACAA 993
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 971 CAATTGGACACCGATAGAAAGTATTGGAACAAATAGCTTTTGAATGAAATATGAAACAA 1029
Score = 154 bits (83), Expect = 2e-36
Identities = 93/97 (96%), Gaps = 4/97 (4%)
Strand=Plus/Plus
Query 1 AATAATCAGCCAACTAGCTTTTTTAATTTTCTTCTCTACAATTCCTCTGTCGCTCTCACC 60
|||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||
Sbjct 1 AATAATCAGCCAACTAGC-TTTTTAA--TT-TTCTCTACAATTCCTCTGTCGCTCTCACC 56
Query 61 AGTTAACAGCTACAGCACAAAACTGTAACCACGCTTC 97
|||||||||||||||||||||||||||||||||||||
Sbjct 57 AGTTAACAGCTACAGCACAAAACTGTAACCACGCTTC 93
> AT4G40000.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr4:18543893-18547523
REVERSE LENGTH=2528
Length=2528
Score = 117 bits (63), Expect = 2e-25
Identities = 68/70 (97%), Gaps = 1/70 (1%)
Strand=Plus/Minus
Query 925 ACATTGGTGTGCAATTGGACACCGATAGAAAGTATTGGAACAA-TAGCTTTTGATTGAAA 983
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 2528 ACATTGGTGTGCAATTGGACACCGATAGAAAGTATTGGAACAAATAGCTTTTGAATGAAA 2469
Query 984 TATGAAACAA 993
||||||||||
Sbjct 2468 TATGAAACAA 2459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48626654296
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5