BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490793
Length=1297
Score E
Sequences producing significant alignments: (Bits) Value
AT4G40060.1 | Symbols: ATHB16, ATHB-16, HB16 | homeobox protein... 1609 0.0
> AT4G40060.1 | Symbols: ATHB16, ATHB-16, HB16 | homeobox protein
16 | chr4:18571359-18573084 REVERSE LENGTH=1518
Length=1518
Score = 1609 bits (871), Expect = 0.0
Identities = 1170/1300 (90%), Gaps = 78/1300 (6%)
Strand=Plus/Plus
Query 70 TCTCTCCCTCTTTTGGACTTTCTCAATCCATATCTCTCTCTTTG-TTTTTCTAA--T--- 123
|||||| ||||||||||||||||||||||||||| |||||| || ||||||||| |
Sbjct 104 TCTCTCTCTCTTTTGGACTTTCTCAATCCATATCCCTCTCTCTGTTTTTTCTAATTTGAG 163
Query 124 --T-TAAAGTCTCCTC-TTTCTGTTTATG-AGAT-TTCAAGCGAAGAAGCTCAATTATGT 177
| |||||||||||| ||| |||| ||| | | |||||| ||||||||||||||||||
Sbjct 164 CCTCTAAAGTCTCCTCGTTT-TGTTCATGTTGTTGTTCAAGTGAAGAAGCTCAATTATGT 222
Query 178 TTACAACATTGTTCTAATTTCAAAACTTCATAAGAATTTCTCTGATAATAAAG--AAA-- 233
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 223 TTACAACATTGTTGTAATTTCAAAACTTCATAAGAATTTCTCTGATAATAAAGAAAAAGC 282
Query 234 ---A--AG------------GTGTCATCATGAAGAGACTAAGCAGCTCAGATTCAATGTG 276
| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 283 TGGAGTAGAACTATTTTAAAGTGTCATCATGAAGAGACTAAGCAGCTCAGATTCAATGTG 342
Query 277 TGGTCTAATCTCCACTTCTACAGATGAACAGAGTCCAAGAGGGTACGGAAGTAATTACCA 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 TGGTCTAATCTCCACTTCTACAGATGAACAGAGTCCAAGAGGGTACGGAAGTAATTACCA 402
Query 337 ATCTATGCTTGAAGGTTACGATGAAGATACTACACTAATGGAGGAATATTCCGGCAACCA 396
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 403 ATCTATGCTTGAAGGTTACGATGAAGATGCTACACTAATCGAGGAATATTCCGGCAACCA 462
Query 397 CCACCACATGGGTCTATCGGAGAAGAAGAGAAGATTAAAAGTTGACCAAGTCAAAGCTCT 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 CCACCACATGGGTCTATCGGAGAAGAAGAGAAGATTAAAAGTTGACCAAGTCAAAGCTCT 522
Query 457 TGAGAAGAATTTCGAACTTGAGAACAAACTCGAGCCTGAGAGGAAAACGAAACTAGCACA 516
|||||||||||||||||||||||| |||||||| |||||||||||||| ||| |||||||
Sbjct 523 TGAGAAGAATTTCGAACTTGAGAATAAACTCGAACCTGAGAGGAAAACTAAATTAGCACA 582
Query 517 AGAGCTTGGACTTCAACCTCGTCAAGTAGCGGTTTGGTTTCAGAACCGTCGTGCACGGTG 576
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 583 AGAGCTTGGACTTCAACCTCGTCAAGTAGCTGTTTGGTTTCAGAACCGTCGTGCACGGTG 642
Query 577 GAAAACAAAACAGCTTGAGAAAGATTACGGCGTTCTTAAGAGCCAATACGATTCTCTCCG 636
|||||||||||||||||| ||||||||||| ||||||||| | |||||||||||||||||
Sbjct 643 GAAAACAAAACAGCTTGAAAAAGATTACGGTGTTCTTAAGGGTCAATACGATTCTCTCCG 702
Query 637 CCACAATTTCGATTCTCTCCGCCGTGACAACGATTGTCTTCTCCAAGAGATTAGTAAAAT 696
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 703 CCACAATTTCGATTCTCTCCGCCGTGACAATGATTCCCTTCTCCAAGAGATTAGTAAAAT 762
Query 697 CAAAGCTAAGATAAACGGAGAAGAAGATAACAACAACAACAAAGTTGCGACGGAGAGCGT 756
|||||||||| ||||||| ||||||||||||||||||||||||| | |||||| | ||
Sbjct 763 CAAAGCTAAGGTAAACGGTGAAGAAGATAACAACAACAACAAAGCTATTACGGAGGGTGT 822
Query 757 TAAGGAAGAAGAATTTCACAAGACGAATTCAATTCCGTCGTCTCCTCTGCAGTTTCTAGA 816
||||||||| ||| ||||||||||| |||| ||||| |||||||||||||||||||||||
Sbjct 823 TAAGGAAGAGGAAGTTCACAAGACGGATTCGATTCCTTCGTCTCCTCTGCAGTTTCTAGA 882
Query 817 ACATTCCTCTGGTTTTAACTACCGGCGAAGCTTCACTGACCTCCGTGACCTTCTACCGAA 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 ACATTCCTCTGGTTTTAACTACCGGCGAAGCTTCACTGACCTCCGTGACCTTCTACCGAA 942
Query 877 TTCCACCGTTGTCGAGGCTGGATCTTCCGATAGTTGCGATTCAAGCGCTGTTCTTAACGA 936
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 943 TTCCACCGTTGTCGAGGCTGGATCTTCCGATAGTTGCGATTCAAGCGCCGTTCTTAACGA 1002
Query 937 CGAAACGAGCTCTGACAACGGAAGATTGACGCCGCCCGTGACGGTAACCGGCGGGAGTTT 996
|||||| || ||||| |||||||||||||||||||| |||||||| || |||||||||||
Sbjct 1003 CGAAACAAGTTCTGATAACGGAAGATTGACGCCGCCTGTGACGGTTACTGGCGGGAGTTT 1062
Query 997 CTTACAGTTTGTGAAAACGGAGCAAACAGAGGATCACGACGATTTTCTAAGCGGTGAAGA 1056
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1063 CTTACAGTTTGTGAAAACAGAGCAAACAGAGGATCACGAGGATTTTCTAAGCGGTGAAGA 1122
Query 1057 AGCTTGTGGTTTCTTCTCCGATGAACAACCTCCGTCACTTCATTGGTACTCTGCTTCGGA 1116
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 1123 AGCTTGTGGTTTCTTCTCCGATGAACAGCCGCCGTCACTTCATTGGTACTCTGCTTCAGA 1182
Query 1117 TCATTGGACTTGAGA---GT----------G---CTCTGTTTTACTCT-A-TGTGGAAAA 1158
||||||||||||||| || | |||||||| | ||| | || ||||||
Sbjct 1183 TCATTGGACTTGAGAATTGTTTATCAAATTGGTGCTCTGTTT-AGTCTCAATG-GGAAAA 1240
Query 1159 ACAGA-ACAGAGGGCAAAAGTGGAAT--T--ATCAATAA--AT-AAGGAT--------T- 1201
|||| | |||||||||| ||||||| | || ||||| || |||||| |
Sbjct 1241 -CAGAGA-AGAGGGCAAAGGTGGAATAATTGATAAATAAGGATTAAGGATGAAGGGGATT 1298
Query 1202 ATTAAATTAACTCAGCGGGAGAAGTTAATTT-GGGTTTAAGATTGTAATGGCTCTT-AGT 1259
|||||||||| || ||||||||||||||||| |||||||||||||||||||||||| | |
Sbjct 1299 ATTAAATTAAATCCGCGGGAGAAGTTAATTTTGGGTTTAAGATTGTAATGGCTCTTCA-T 1357
Query 1260 GTAATTAACGAT--CGAGAGGGGCTTTCACAGAAATAGGA 1297
|||||||||||| ||||||||||||||||||||||||||
Sbjct 1358 GTAATTAACGATGTCGAGAGGGGCTTTCACAGAAATAGGA 1397
Score = 111 bits (60), Expect = 1e-23
Identities = 74/80 (93%), Gaps = 4/80 (5%)
Strand=Plus/Plus
Query 1 AAAGAGAAAGTGTGAAACCAACTTGCTCATATTGAAAACAAAGAACCATTGCTCTCTAGA 60
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1 AAAGAGAAAGTGTGAAACCAACTTGTTCATATTGAAAA----GAACCATTGCTCTCTAGA 56
Query 61 TTAAAAGCTTCTCTCCCTCT 80
||||||||||||||| ||||
Sbjct 57 TTAAAAGCTTCTCTCTCTCT 76
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63804892695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5