BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490794
Length=2217
Score E
Sequences producing significant alignments: (Bits) Value
AT4G40050.1 | Symbols: | Protein of unknown function (DUF3550/... 3059 0.0
> AT4G40050.1 | Symbols: | Protein of unknown function (DUF3550/UPF0682)
| chr4:18560860-18563838 REVERSE LENGTH=2257
Length=2257
Score = 3059 bits (1656), Expect = 0.0
Identities = 2079/2271 (92%), Gaps = 78/2271 (3%)
Strand=Plus/Plus
Query 1 TTCCCATTGATTAG--TCT-T-tctctc---t-ctctctctctAGAGCCGATGATAAACG 52
|||||||||||||| ||| | |||||| | || | |||| |||||||||||||||||
Sbjct 9 TTCCCATTGATTAGTTTCTCTCTCTCTCTTTTCCTTTGTCTCCAGAGCCGATGATAAACG 68
Query 53 ACGGCGGTTTTCACCGGAACTGAGGGAAATT-AGCT-GT-CACATGGCGGGTGAAGATGT 109
||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||
Sbjct 69 ACGGCGGTTTTCACCGGAACTGAGGGAAATTAAGCTGGTAAACATGGCGGGTGAAGATGT 128
Query 110 TTCAAGCAATTTCCGAGCTTTGGTGGAGAACGCTGACCGGAAATTCGCCAGAGTTCGCGA 169
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 129 TTCAAGCAATTTCCGAGCTTTGGTGGAGAACGCAGACCGGAAATTCGCAAGAGTTCGCGA 188
Query 170 TCTTCCTGCGTTTGGACGAGCACAGAGTCACTACTTCCAAAAGGTTTTCAAAGCTTATAT 229
|||||| ||||||||| ||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 189 TCTTCCGGCGTTTGGAAGAGCACAGAGTCATTACTTCCAAAAGGTGTTCAAAGCTTATAT 248
Query 230 GAAACTATGGAATTATCAGCAATCTTATAGGTCGAAGCTGGTCGAGTCCGGTTTAAACCG 289
|||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 249 GAAACTATGGAACTATCAGCAATCTCATAGGTCAAAGCTGGTCGAGTCCGGTTTAAACCG 308
Query 290 ATGGGAAATCGGCGAGATCGCGAGCCGGATTGGTCAGCTTTACTTTAGTCAGTACATGAG 349
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 309 ATGGGAAATCGGCGAGATCGCGAGCCGGATTGGTCAGCTTTACTTTAGTCAATACATGAG 368
Query 350 GACTAGTGAAGCTAGGTTTCTTCTTGAGGCTTATGTCTTCTATGAAGCGATTTTGAGGAG 409
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||
Sbjct 369 GACTAGTGAAGCTAGGTTTCTTCTTGAGGCTTTTGTTTTCTATGAAGCGATTTTGAAAAG 428
Query 410 GAGGTACTTTGATGAAGCTCAAGGGAAAGATCTTGGTGCTCGATTTAAGGAGTTACGGTT 469
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 429 GAGCTACTTTGATGAAGCTCAGGGGAAAGATCTTGGTGCTCGATTTAAGGAGTTACGCTT 488
Query 470 TTATGCGAGGTTTTTGCTTGTTTCCTTGATTGTTGATCGGAAAGAAATGGTTTTGCATTT 529
||||| |||||| |||||||||| |||||||||||||||||| ||||| ||||||| ||
Sbjct 489 CTATGCCAGGTTTCTGCTTGTTTCGTTGATTGTTGATCGGAAACAAATGCTTTTGCACTT 548
Query 530 AGCTGAGAAGCTTAGGGTTTTGGTTGATGACAGCAAATCTAATTTCAGGGAGACAAACTT 589
|||||| ||||||||| ||||||||||| |||||| ||| ||||| ||||||||||||||
Sbjct 549 AGCTGACAAGCTTAGGCTTTTGGTTGATCACAGCATATCCAATTTTAGGGAGACAAACTT 608
Query 590 TAAGGAGTGGAGGCTAGTTGTGCAAGAAATCACTCGGTTTATTA-AATCTGATACAAATT 648
|||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||
Sbjct 609 TAAGGAGTGGAGGCTAGTTGTGCAAGAAATCACTCGCTTTAT-AGAATCTGATACAAATT 667
Query 649 TAACTTATGTTAGGCCTCTACGTTATTGTGCAATGCTTGATTCATATCCAGCTTCTCAAA 708
|||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 668 TAACTTATCTCAGGCCTCTACGTTACTGTGCAATGCTTGATTCATATCCAGCTTCTCAAA 727
Query 709 CATATCTAGCGCGGTTCCACGCTAAGAAGTTGTTTAAGTTTCGTGATGCTCTTTTGGCTA 768
| ||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 728 CTTATCTTGCGCGCTTCCACGCTAAGAAATTGTTTAAGTTTCGTGATGCTCTCTTGGCAA 787
Query 769 GTTATCACCGTAATGAGGTGAAATATGCTGAAGTCACCTTGGATACGTATAGAATGATGC 828
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 788 GTTATCACCGTAATGAGGTGAAATATGCTGAAGTGACGTTGGATACGTATAGAATGATGC 847
Query 829 AGTGTTTAGAATGGGAACCCAGTGGATCTTTTTACCAAAAACGGCCTGTTGTTGAAGCGA 888
||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
Sbjct 848 AGTGTTTAGAATGGGAACCCAGTGGATCTTTTTACCAAAAAAAGCCTGTTG---AAGCCA 904
Query 889 AGGAGAATGGTTTTGTGATTGATCATACTTTAACTTCTGGGCTTATAGATATGAAGTTGG 948
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 905 AGGAGAATGGGTTTGTGGTTGATCATACTTTAACTTCTGGGCTTATAGATATGAACTTGG 964
Query 949 CTGCCGATATGGCTGATCCATCATTACCTCCTAATCCTAGAAAAGCAATTCTTTATCGTC 1008
|||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 965 CTGCTGATATGGCTGATCCATCATTACCTCCTAATCCTAGGAAAGCTATTCTTTATCGTC 1024
Query 1009 CCACGGTATCTCACTTGCTAGCGGTCTTGGCAATGATTTGTGATGAGCTCTCTCCTGAGA 1068
|||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1025 CCACAGTATCACACTTACTAGCGGTCTTGGCAATGATTTGTGATGAGCTCTCTCCAGAGA 1084
Query 1069 CTGTGATGCTGTTATATTTGTCAGCTTCAGGTGGTCCTGCTCGTGATAATGTTGCGCAAC 1128
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1085 CTGTGATGCTGTTATATTTGTCAGCTTCAGGTGGTCCTGCTCGTGAAAATGTTGCGCAAC 1144
Query 1129 CAGAGAACTTTGTCGGTTCAAGCAGAACATCAAAAAGCAAGCTGCTTGCACGAGCCTCCC 1188
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1145 CAGAGAACTCTGTCGGTTCAAGCAGAACATCAAAAAGCAAGCTGCTTGCCCGAGCTTCCC 1204
Query 1189 AAGAACAGAAAAGTTACAAGTCAGAACCACATAGCAATGGAAAAATG-TCGTCTGG-TGA 1246
|||||||||||||||||||||||||||| ||||||||||||||| | | ||| || |||
Sbjct 1205 AAGAACAGAAAAGTTACAAGTCAGAACCTCATAGCAATGGAAAACTAAT-GTC-GGCTGA 1262
Query 1247 TTATTATGAGGATCATCTCTGGTTAGGTCCTAGAGGAGG---CTCTGGTTCAAACAATCT 1303
|| ||||| |||| ||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1263 GTACTATGAAAATCACCTCTGGTTAGGTCCTAGAGGAGGAAGCTCTGGTTCAAACAACCT 1322
Query 1304 TTACCCTGGTGATCTAATCCCTTTTACACGGAAACCACTTTTCTTGATCATTGATAGCGA 1363
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 TTACCCTGGTGACCTAATCCCTTTTACACGGAAACCACTTTTCTTGATCATTGATAGCGA 1382
Query 1364 CACTAGCCGTGCATTCAAGGCAGTAACTGTTTTGGGTGGCGCAGAGAGAGGCGAGCCTGT 1423
|||||||||||||||||||| | | || ||| |||||||||||||||||||||||
Sbjct 1383 CACTAGCCGTGCATTCAAGG---T---T-TT--GGGCGGCGCAGAGAGAGGCGAGCCTGT 1433
Query 1424 TGCTATGCTTCTTTCTCCTCTGAAGCCATCATTCGAGAACCCATCTACTGATGATGATAC 1483
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1434 TGCTATGCTTCTTTCTCCTCTGAAGCCATCATTCGAGAACCCATCTACTGATGAT-A--C 1490
Query 1484 AGAAGCACTAAACGGAAGTCAGTTTACTTTTTTCTTAACAGCTCCTTTACAAGCATTCTG 1543
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 GGAAGCACTAAATGGAAGTCAGTTTACTTTTTTCTTAACAGCTCCTTTACAAGCATTCTG 1550
Query 1544 TCAAATGCTTGGCCTCTCAAACTC-AAACCCCGACCCTGAAGTT-TATGATGAAGCAGAG 1601
||||||||| |||||||||||| | ||||| ||||||||| || | |||||||||||||
Sbjct 1551 TCAAATGCTGGGCCTCTCAAACACCAAACCT-GACCCTGAA-TTATGTGATGAAGCAGAG 1608
Query 1602 AGCATACTTTCTGCTTCCTTTTCTGAGTGGGAAACGATTCTCTTGACTTCCAAAGTCTTG 1661
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1609 AGCATACTTTCTGCTTCCTTTTCCGAGTGGGAAACGATTCTCTTGACTTCCAAAGTCTTG 1668
Query 1662 AATCTTGTCTGGGCACAGGTCTTGCCAGATCCATTCTTGAGACGGCTGATTCTCAGATTC 1721
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1669 AATCTTGTCTGGGCACAGGTCTTACCTGATCCATTCTTGAGACGGCTGATTCTCAGATTC 1728
Query 1722 ATATTCTGCCGGTCTGTACTCACTTCCTTCATCCGCACAGAGGATCATGACCTGTATCTA 1781
||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||| ||
Sbjct 1729 ATATTCTGCCGGTCTGTACTCACTTCCTTCAGCCGCACAGAGGATGATGACCCGTATTTA 1788
Query 1782 CCTCAATGCCACCCGAATCTCCCAGA-CTCGATCTCACCGGTATCTAAACCAGTGCAGTC 1840
|||||||||||||||||||||||||| || | |||| ||||||||||||| ||||||||
Sbjct 1789 CCTCAATGCCACCCGAATCTCCCAGAGCT-GCTCTCTTCGGTATCTAAACCGGTGCAGTC 1847
Query 1841 CTCAGTACAACGACTAGCTGACCACTTGGGTGTTGCCAAATCTTTCCACTTCACCAA-AT 1899
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1848 CTCAGTACAACGACTAGCTGAGCACTTGGGTGTTGCCAAATCTTTCCACTTCACCAACA- 1906
Query 1900 CATAAAACTAGAAAAA-CC--C----------A-AG--G-TTGGTGGGTGAGATAGTAGG 1942
||||||| |||||||| || | | || | ||||||||||||| ||||||
Sbjct 1907 CATAAAATTAGAAAAATCCATCCCTGTGGTTGAGAGTAGGTTGGTGGGTGAGAGAGTAGG 1966
Query 1943 TTGTTTGTTCGTTTTT-TATAGAGAAGTCTGTAttttttttAGGGTATAAAGAAA-GAGA 2000
|||||||||||||||| | || |||||| ||||||| ||| |||||||||||||| ||||
Sbjct 1967 TTGTTTGTTCGTTTTTGT-TATAGAAGTTTGTATTTGTTT-AGGGTATAAAGAAAAGAGA 2024
Query 2001 AAATTGTAATTTTTATTTTGATTTGATGATTCTTTAGTTTTGTCCT-TT-GTAAAAGATT 2058
||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||
Sbjct 2025 GAATTGTAATTTTTATTTTGATTTGATGATTCTTTAGTTTTGTCATATTTGTAAAAGATT 2084
Query 2059 AGAACCAGGTAATAATCATTAGTCTCTTCTCTAGGATGGTTTGCTTTGTGTACAAGGAGA 2118
||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 2085 AGAACAAGGTAATAATCATTAGTCTCTTCTTTAGGATGGTTTGCTTTGTGTACGAGGAGA 2144
Query 2119 GATTAACAATATATGTGCATTCCTTTAAAGAAAGTGTGACATT-T----TTGTTCTTTCG 2173
| |||||||||| |||||||| | ||||||||| | || | | | ||||||| |||
Sbjct 2145 GGTTAACAATATCTGTGCATTGCATTAAAGAAACTAAGAAAGTGTGACATTGTTCTATCG 2204
Query 2174 CTTTTTCATA----T-T-T-TAAGTTTGAGCTAAGAACGAAATAAAGATTG 2217
|||||||||| | | | ||||||||||| ||||||||| |||||||||
Sbjct 2205 CTTTTTCATAAACATCTATGTAAGTTTGAGCCAAGAACGAATTAAAGATTG 2255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109989394095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5