BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg490800

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G26290.1 | Symbols:  | unknown protein; Has 126 Blast hits t...   854    0.0  


> AT1G26290.1 | Symbols:  | unknown protein; Has 126 Blast hits 
to 112 proteins in 36 species: Archae - 0; Bacteria - 6; Metazoa 
- 14; Fungi - 3; Plants - 14; Viruses - 0; Other Eukaryotes 
- 89 (source: NCBI BLink). | chr1:9097984-9098667 FORWARD 
LENGTH=608
Length=608

 Score =  854 bits (462),  Expect = 0.0
 Identities = 516/542 (95%), Gaps = 3/542 (1%)
 Strand=Plus/Plus

Query  1    ATGGACCACAAAGACTATAGCCGACAAAATGAGGAGAGGAGACTCTTATTGTCTAAAGAA  60
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| 
Sbjct  68   ATGGACCACAAAGACTATAGCCGACAAAATGCGGAGAGGAGACTCTTATTGTCTAAAGAC  127

Query  61   GAAGAGAGGATCCGCGATGAGCTTGAAATGGAAATCGAAAGAAATTTGGAAGGGGAATTC  120
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  128  GAAGAGAGGATCCGCGATGAGCTAGAAATGGAAATCGAAAGAAATTTGGAAGGGGAATTC  187

Query  121  AAGGACGGGATCTACAATCTCGCACTCAAGCTGCGTCGACTTTATGAACAAAGACGGGAA  180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  188  AAGGACGGGATCTACAATCTCGCACTCAAGCTGCGTCGACTTTATGAACAAAGACGAGAA  247

Query  181  AGAGAAGAGTTGTTCGATGTTTCAATGAGAAAGAGCAAGAGAGTACTGGAGGTGAACATA  240
            ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  248  AGAGAGGAGTTGTTCGATGTTTCAATGAGAAAGAGCAAGAGAGTATTGGAGGTGAACATA  307

Query  241  AGTATAAAGATGGAAGGAGATACCAAGATTGAGATCACAGAGAGGAAGAAGGAGGTAGAC  300
            | ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct  308  AATATAAAGATGGAAGGAGATACCAAGATTGAGATCACAGAGAAGAAGAAGGAAGTAGAC  367

Query  301  AACGAAAAGACGAAAAAGGCAGAGAATTCGGACAAGAGAAAGAAGTTTATACCAGCTGGT  360
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||
Sbjct  368  AACGAAAAGACGAAAAAGGCAGAGAATTCGGACAAGAGAAAGAAGTTTGTAGCAGTTGGT  427

Query  361  GAAGATAAAACAGGAAAGGAAAAGATGAAGAATCAAACCAGAGCTCATGAACTCAGATGG  420
            ||||||||||||||||| |||||||||||||||||||| || |||||||| |||||||||
Sbjct  428  GAAGATAAAACAGGAAAAGAAAAGATGAAGAATCAAACGAGGGCTCATGAGCTCAGATGG  487

Query  421  AAATGGTAAAGAGATTGATTAGCCTGTATCTGTGCCTATTTGCTGGTATCTACCTATGTT  480
            |||||||||||||| ||||| ||||| |||||||||||| |||||||||||| |||||||
Sbjct  488  AAATGGTAAAGAGAATGATTGGCCTGGATCTGTGCCTATATGCTGGTATCTATCTATGTT  547

Query  481  TGAACCttttt-ttCCTGCAAATCCTATTTAAACAC-AATGAAATAAGAGTTATGCTTGC  538
            || || ||||| ||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct  548  TGCAC-TTTTTCTTCCTGCAAATCCTACTTAAACACGAATGAAATAAGAGTTATGCTTGC  606

Query  539  TT  540
            ||
Sbjct  607  TT  608



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25870585705


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5