BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490803
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38090.1 | Symbols: | Ribosomal protein S5 domain 2-like su... 1170 0.0
> AT4G38090.1 | Symbols: | Ribosomal protein S5 domain 2-like
superfamily protein | chr4:17883700-17884726 REVERSE LENGTH=786
Length=786
Score = 1170 bits (633), Expect = 0.0
Identities = 743/792 (94%), Gaps = 23/792 (3%)
Strand=Plus/Plus
Query 2 GCAAAAAGACAACAATCAGATGCGGGTGGGCGTACCGGTAGCAGCAG--G-AACCACCGT 58
|||||||| ||||||||||||| |||||||||||||||||||||||| | |||||||||
Sbjct 6 GCAAAAAGGCAACAATCAGATGTGGGTGGGCGTACCGGTAGCAGCAGCAGTAACCACCGT 65
Query 59 CGCCGTCGTTCTCCGCCGCAGAATCCCGGTGATAGTGGCTGCATCCGGCAAGAGCTCGAT 118
|| | || |||||||||| |||||| ||||||||||||| |||||||| |||||
Sbjct 66 CG--G-CG------GCCGCAGAATACCGGTGTTAGTGGCTGCATCAGGCAAGAGGTCGAT 116
Query 119 GGCTTCGAATTCGGGTTCAGATTCATCATTCACGACAATCAAAGAAATCGTATCCGTGGA 178
|||||||||||| || | | |||||||||||| | ||||||| ||||||||||||
Sbjct 117 GGCTTCGAATTC-GG----G--T--TCATTCACGACACTAAAAGAAACCGTATCCGTGGA 167
Query 179 GAAAGAGATAAAGAAGAGCAAGTTCATCGCAATCGCTGGTCCAATCTCCACCGAGCAATC 238
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 168 GAAAGAGATAAAGAAGAGCAAGTTCATCGCAATCGCTGGACCAATCTCCTCCGAGCAATC 227
Query 239 CGCTCAAATGTTCCTCTCTCAGGTCCGTGATCCTCGCGCTTCTCACAATTGCTGGGCTTA 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 AGCTCAAATGTTCCTCTCTCAGGTCCGTGATCCTCGCGCTTCTCACAATTGCTGGGCTTA 287
Query 299 TAAGATCGGTGATCAACACCATCGATGTAGCGATGATGGTGAGCCATCAGGCACAGCAGG 358
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 288 TAAGATCGGTGATCATCACCATCGATGTAGCGATGATGGTGAGCCATCTGGCACAGCAGG 347
Query 359 GAAGCCGATTCAGTCTGCAATTCTGTCTTCTGGATTAGACAGAGTTATGGTTGTTGTCAT 418
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 348 GAAGCCGATTCAGTCTGCTATTCTCTCTTCTGGATTAGACAGAGTTATGGTTGTTGTCAT 407
Query 419 TAGGTATTTTGGGGGAATCAAACTTGGAACTGGAGGTCTTGTTAGAGCATATGGTGGTGT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 TAGGTATTTTGGGGGAATCAAACTTGGAACTGGAGGTCTTGTTAGAGCATATGGTGGTGT 467
Query 479 TACATCTGATTGCTTGAAAACTGCTCCTACTTGTCTTGTCAAGTCCAAAGTTCAAATGGG 538
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 468 TACATCTGATTGCTTGAAAACTGCTCCTTCTTGTCTGGTCAAGTCCAAAGTTCAAATGGG 527
Query 539 AGTCGAGGTGACATTTGATCTTTTAGGTGTTCTTTACAATCAGCTGCAGTCGTGTCACGC 598
||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 528 AGTTGAGGTCACATTTGATCTTTTAGGTGTTCTTTACAATCAGCTGCAATCGTGTCACGC 587
Query 599 TGAAGACATCAAGGAAGACTATGATACTGGTAAAGATGGTACTGCAATGGTTTCTTTCAA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 TGAAGACATCAAGGAAGACTATGATACTGGTAAAGATGGTACTGCAATGGTTTCTTTCAA 647
Query 659 GGTTGAATTTGACCTGGTTGATAAATTAGAGGATGCTATCAAATCAAACTGTAGACGAGA 718
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 GGTTGAGTTTGACCTTGTTGATAAATTAGAGGATGCTATCAAATCAAACTGTAGACGAGA 707
Query 719 CCTTGTCTTTTACAAAACTTAGGGTTAA-GCATTGTCATGTAATC-GTTACAGAATAAAG 776
||||||||||||||||||||||||| || ||||| |||||||||| ||||||||||||||
Sbjct 708 CCTTGTCTTTTACAAAACTTAGGGTAAAAGCATTCTCATGTAATCAGTTACAGAATAAAG 767
Query 777 CTTAtttttttt 788
||| ||||||||
Sbjct 768 CTTCTTTTTTTT 779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38378888308
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5